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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents), Revision 320 by tim, Sun Feb 13 07:14:59 2005 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (file contents), Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/bin/gengetopt -F DynamicPropsCmd
4	>	gengetopt --file-name=DynamicPropsCmd --unamed-opts
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#ifdef WIN32
25	>	#include "utils/wingetopt.h"
26	>	#else
27	>	#include <getopt.h>
28	>	#endif
29
30		#include "DynamicPropsCmd.h"
31
32	+	const char *gengetopt_args_info_purpose = "";
33	+
34	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
35	+
36	+	const char *gengetopt_args_info_description = "";
37	+
38	+	const char *gengetopt_args_info_help[] = {
39	+	"  -h, --help                    Print help and exit",
40	+	"  -V, --version                 Print version and exit",
41	+	"  -i, --input=filename          input dump file",
42	+	"  -o, --output=filename         output file name",
43	+	"      --sele1=selection script  select first stuntdouble set",
44	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
45	+	"      --order=INT               Lengendre Polynomial Order",
46	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
47	+	"\n Group: dynamicProps\n   an option of this group is required",
48	+	"  -s, --selecorr                selection correlation function",
49	+	"  -r, --rcorr                   rmsd",
50	+	"  -v, --vcorr                   velocity correlation function",
51	+	"  -d, --dcorr                   dipole correlation function",
52	+	"  -l, --lcorr                   Lengendre correlation function",
53	+	"  -M, --sdcorr                  System dipole correlation function",
54	+	"      --r_rcorr                 Radial rmsd",
55	+	"      --thetacorr               Angular rmsd",
56	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
57	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
58	+	"  -p, --momentum                Helfand momentum for viscosity",
59	+	"      --stresscorr              Stress tensor correlation function",
60	+	0
61	+	};
62	+
63	+	typedef enum {ARG_NO
64	+	, ARG_STRING
65	+	, ARG_INT
66	+	} cmdline_parser_arg_type;
67	+
68	+	static
69	+	void clear_given (struct gengetopt_args_info *args_info);
70	+	static
71	+	void clear_args (struct gengetopt_args_info *args_info);
72	+
73	+	static int
74	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
75	+	struct cmdline_parser_params *params, const char *additional_error);
76	+
77	+	static int
78	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
79	+
80	+	static char *
81	+	gengetopt_strdup (const char *s);
82	+
83	+	static
84	+	void clear_given (struct gengetopt_args_info *args_info)
85	+	{
86	+	args_info->help_given = 0 ;
87	+	args_info->version_given = 0 ;
88	+	args_info->input_given = 0 ;
89	+	args_info->output_given = 0 ;
90	+	args_info->sele1_given = 0 ;
91	+	args_info->sele2_given = 0 ;
92	+	args_info->order_given = 0 ;
93	+	args_info->memory_given = 0 ;
94	+	args_info->selecorr_given = 0 ;
95	+	args_info->rcorr_given = 0 ;
96	+	args_info->vcorr_given = 0 ;
97	+	args_info->dcorr_given = 0 ;
98	+	args_info->lcorr_given = 0 ;
99	+	args_info->sdcorr_given = 0 ;
100	+	args_info->r_rcorr_given = 0 ;
101	+	args_info->thetacorr_given = 0 ;
102	+	args_info->drcorr_given = 0 ;
103	+	args_info->helfandEcorr_given = 0 ;
104	+	args_info->momentum_given = 0 ;
105	+	args_info->stresscorr_given = 0 ;
106	+	args_info->dynamicProps_group_counter = 0 ;
107	+	}
108	+
109	+	static
110	+	void clear_args (struct gengetopt_args_info *args_info)
111	+	{
112	+	FIX_UNUSED (args_info);
113	+	args_info->input_arg = NULL;
114	+	args_info->input_orig = NULL;
115	+	args_info->output_arg = NULL;
116	+	args_info->output_orig = NULL;
117	+	args_info->sele1_arg = NULL;
118	+	args_info->sele1_orig = NULL;
119	+	args_info->sele2_arg = NULL;
120	+	args_info->sele2_orig = NULL;
121	+	args_info->order_orig = NULL;
122	+	args_info->memory_arg = gengetopt_strdup ("2G");
123	+	args_info->memory_orig = NULL;
124	+
125	+	}
126	+
127	+	static
128	+	void init_args_info(struct gengetopt_args_info *args_info)
129	+	{
130	+
131	+
132	+	args_info->help_help = gengetopt_args_info_help[0] ;
133	+	args_info->version_help = gengetopt_args_info_help[1] ;
134	+	args_info->input_help = gengetopt_args_info_help[2] ;
135	+	args_info->output_help = gengetopt_args_info_help[3] ;
136	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
137	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
138	+	args_info->order_help = gengetopt_args_info_help[6] ;
139	+	args_info->memory_help = gengetopt_args_info_help[7] ;
140	+	args_info->selecorr_help = gengetopt_args_info_help[9] ;
141	+	args_info->rcorr_help = gengetopt_args_info_help[10] ;
142	+	args_info->vcorr_help = gengetopt_args_info_help[11] ;
143	+	args_info->dcorr_help = gengetopt_args_info_help[12] ;
144	+	args_info->lcorr_help = gengetopt_args_info_help[13] ;
145	+	args_info->sdcorr_help = gengetopt_args_info_help[14] ;
146	+	args_info->r_rcorr_help = gengetopt_args_info_help[15] ;
147	+	args_info->thetacorr_help = gengetopt_args_info_help[16] ;
148	+	args_info->drcorr_help = gengetopt_args_info_help[17] ;
149	+	args_info->helfandEcorr_help = gengetopt_args_info_help[18] ;
150	+	args_info->momentum_help = gengetopt_args_info_help[19] ;
151	+	args_info->stresscorr_help = gengetopt_args_info_help[20] ;
152	+
153	+	}
154	+
155		void
156		cmdline_parser_print_version (void)
157		{
158	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
158	>	printf ("%s %s\n",
159	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
160	>	CMDLINE_PARSER_VERSION);
161		}
162
163	+	static void print_help_common(void) {
164	+	cmdline_parser_print_version ();
165	+
166	+	if (strlen(gengetopt_args_info_purpose) > 0)
167	+	printf("\n%s\n", gengetopt_args_info_purpose);
168	+
169	+	if (strlen(gengetopt_args_info_usage) > 0)
170	+	printf("\n%s\n", gengetopt_args_info_usage);
171	+
172	+	printf("\n");
173	+
174	+	if (strlen(gengetopt_args_info_description) > 0)
175	+	printf("%s\n\n", gengetopt_args_info_description);
176	+	}
177	+
178		void
179		cmdline_parser_print_help (void)
180		{
181	<	cmdline_parser_print_version ();
182	<	printf("\n"
183	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
184	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("\n");
45	<	printf(" Group: dynamicProps  an option of this group is required\n");
46	<	printf("  -r, --rcorr                   rmsd\n");
47	<	printf("  -v, --vcorr                   velocity correlation function\n");
48	<	printf("  -d, --dcorr                   dipole correlation function\n");
181	>	int i = 0;
182	>	print_help_common();
183	>	while (gengetopt_args_info_help[i])
184	>	printf("%s\n", gengetopt_args_info_help[i++]);
185		}
186
187	+	void
188	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
189	+	{
190	+	clear_given (args_info);
191	+	clear_args (args_info);
192	+	init_args_info (args_info);
193
194	<	static char *gengetopt_strdup (const char *s);
194	>	args_info->inputs = 0;
195	>	args_info->inputs_num = 0;
196	>	}
197
198	<	/* gengetopt_strdup() */
199	<	/* strdup.c replacement of strdup, which is not standard */
198	>	void
199	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
200	>	{
201	>	if (params)
202	>	{
203	>	params->override = 0;
204	>	params->initialize = 1;
205	>	params->check_required = 1;
206	>	params->check_ambiguity = 0;
207	>	params->print_errors = 1;
208	>	}
209	>	}
210	>
211	>	struct cmdline_parser_params *
212	>	cmdline_parser_params_create(void)
213	>	{
214	>	struct cmdline_parser_params *params =
215	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
216	>	cmdline_parser_params_init(params);
217	>	return params;
218	>	}
219	>
220	>	static void
221	>	free_string_field (char **s)
222	>	{
223	>	if (*s)
224	>	{
225	>	free (*s);
226	>	*s = 0;
227	>	}
228	>	}
229	>
230	>
231	>	static void
232	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
233	>	{
234	>	unsigned int i;
235	>	free_string_field (&(args_info->input_arg));
236	>	free_string_field (&(args_info->input_orig));
237	>	free_string_field (&(args_info->output_arg));
238	>	free_string_field (&(args_info->output_orig));
239	>	free_string_field (&(args_info->sele1_arg));
240	>	free_string_field (&(args_info->sele1_orig));
241	>	free_string_field (&(args_info->sele2_arg));
242	>	free_string_field (&(args_info->sele2_orig));
243	>	free_string_field (&(args_info->order_orig));
244	>	free_string_field (&(args_info->memory_arg));
245	>	free_string_field (&(args_info->memory_orig));
246	>
247	>
248	>	for (i = 0; i < args_info->inputs_num; ++i)
249	>	free (args_info->inputs [i]);
250	>
251	>	if (args_info->inputs_num)
252	>	free (args_info->inputs);
253	>
254	>	clear_given (args_info);
255	>	}
256	>
257	>
258	>	static void
259	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
260	>	{
261	>	FIX_UNUSED (values);
262	>	if (arg) {
263	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
264	>	} else {
265	>	fprintf(outfile, "%s\n", opt);
266	>	}
267	>	}
268	>
269	>
270	>	int
271	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
272	>	{
273	>	int i = 0;
274	>
275	>	if (!outfile)
276	>	{
277	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
278	>	return EXIT_FAILURE;
279	>	}
280	>
281	>	if (args_info->help_given)
282	>	write_into_file(outfile, "help", 0, 0 );
283	>	if (args_info->version_given)
284	>	write_into_file(outfile, "version", 0, 0 );
285	>	if (args_info->input_given)
286	>	write_into_file(outfile, "input", args_info->input_orig, 0);
287	>	if (args_info->output_given)
288	>	write_into_file(outfile, "output", args_info->output_orig, 0);
289	>	if (args_info->sele1_given)
290	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
291	>	if (args_info->sele2_given)
292	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
293	>	if (args_info->order_given)
294	>	write_into_file(outfile, "order", args_info->order_orig, 0);
295	>	if (args_info->memory_given)
296	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
297	>	if (args_info->selecorr_given)
298	>	write_into_file(outfile, "selecorr", 0, 0 );
299	>	if (args_info->rcorr_given)
300	>	write_into_file(outfile, "rcorr", 0, 0 );
301	>	if (args_info->vcorr_given)
302	>	write_into_file(outfile, "vcorr", 0, 0 );
303	>	if (args_info->dcorr_given)
304	>	write_into_file(outfile, "dcorr", 0, 0 );
305	>	if (args_info->lcorr_given)
306	>	write_into_file(outfile, "lcorr", 0, 0 );
307	>	if (args_info->sdcorr_given)
308	>	write_into_file(outfile, "sdcorr", 0, 0 );
309	>	if (args_info->r_rcorr_given)
310	>	write_into_file(outfile, "r_rcorr", 0, 0 );
311	>	if (args_info->thetacorr_given)
312	>	write_into_file(outfile, "thetacorr", 0, 0 );
313	>	if (args_info->drcorr_given)
314	>	write_into_file(outfile, "drcorr", 0, 0 );
315	>	if (args_info->helfandEcorr_given)
316	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
317	>	if (args_info->momentum_given)
318	>	write_into_file(outfile, "momentum", 0, 0 );
319	>	if (args_info->stresscorr_given)
320	>	write_into_file(outfile, "stresscorr", 0, 0 );
321	>
322	>
323	>	i = EXIT_SUCCESS;
324	>	return i;
325	>	}
326	>
327	>	int
328	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
329	>	{
330	>	FILE *outfile;
331	>	int i = 0;
332	>
333	>	outfile = fopen(filename, "w");
334	>
335	>	if (!outfile)
336	>	{
337	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
338	>	return EXIT_FAILURE;
339	>	}
340	>
341	>	i = cmdline_parser_dump(outfile, args_info);
342	>	fclose (outfile);
343	>
344	>	return i;
345	>	}
346	>
347	>	void
348	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
349	>	{
350	>	cmdline_parser_release (args_info);
351	>	}
352	>
353	>	/** @brief replacement of strdup, which is not standard */
354		char *
355		gengetopt_strdup (const char *s)
356		{
357	<	char *result = (char*)malloc(strlen(s) + 1);
357	>	char *result = 0;
358	>	if (!s)
359	>	return result;
360	>
361	>	result = (char*)malloc(strlen(s) + 1);
362		if (result == (char*)0)
363		return (char*)0;
364		strcpy(result, s);
365		return result;
366		}
367
368	<	int
369	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
368	>	static void
369	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
370		{
371	<	int c;        /* Character of the parsed option.  */
372	<	int missing_required_options = 0;
71	<	int dynamicProps_group_counter = 0;
371	>	if (! args_info->dynamicProps_group_counter)
372	>	return;
373
374	<
74	<	args_info->help_given = 0 ;
75	<	args_info->version_given = 0 ;
76	<	args_info->input_given = 0 ;
77	<	args_info->output_given = 0 ;
78	<	args_info->sele1_given = 0 ;
79	<	args_info->sele2_given = 0 ;
374	>	args_info->selecorr_given = 0 ;
375		args_info->rcorr_given = 0 ;
376		args_info->vcorr_given = 0 ;
377		args_info->dcorr_given = 0 ;
378	<	#define clear_args() { \
379	<	args_info->input_arg = NULL; \
380	<	args_info->output_arg = NULL; \
381	<	args_info->sele1_arg = NULL; \
382	<	args_info->sele2_arg = NULL; \
378	>	args_info->lcorr_given = 0 ;
379	>	args_info->sdcorr_given = 0 ;
380	>	args_info->r_rcorr_given = 0 ;
381	>	args_info->thetacorr_given = 0 ;
382	>	args_info->drcorr_given = 0 ;
383	>	args_info->helfandEcorr_given = 0 ;
384	>	args_info->momentum_given = 0 ;
385	>	args_info->stresscorr_given = 0 ;
386	>
387	>	args_info->dynamicProps_group_counter = 0;
388		}
389
390	<	clear_args();
390	>	int
391	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
392	>	{
393	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
394	>	}
395	>
396	>	int
397	>	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
398	>	struct cmdline_parser_params *params)
399	>	{
400	>	int result;
401	>	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
402	>
403	>	if (result == EXIT_FAILURE)
404	>	{
405	>	cmdline_parser_free (args_info);
406	>	exit (EXIT_FAILURE);
407	>	}
408	>
409	>	return result;
410	>	}
411	>
412	>	int
413	>	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
414	>	{
415	>	int result;
416	>	struct cmdline_parser_params params;
417	>
418	>	params.override = override;
419	>	params.initialize = initialize;
420	>	params.check_required = check_required;
421	>	params.check_ambiguity = 0;
422	>	params.print_errors = 1;
423	>
424	>	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
425	>
426	>	if (result == EXIT_FAILURE)
427	>	{
428	>	cmdline_parser_free (args_info);
429	>	exit (EXIT_FAILURE);
430	>	}
431	>
432	>	return result;
433	>	}
434	>
435	>	int
436	>	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
437	>	{
438	>	int result = EXIT_SUCCESS;
439	>
440	>	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
441	>	result = EXIT_FAILURE;
442	>
443	>	if (result == EXIT_FAILURE)
444	>	{
445	>	cmdline_parser_free (args_info);
446	>	exit (EXIT_FAILURE);
447	>	}
448	>
449	>	return result;
450	>	}
451	>
452	>	int
453	>	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
454	>	{
455	>	int error = 0;
456	>	FIX_UNUSED (additional_error);
457	>
458	>	/* checks for required options */
459	>	if (! args_info->input_given)
460	>	{
461	>	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
462	>	error = 1;
463	>	}
464	>
465	>	if (args_info->dynamicProps_group_counter == 0)
466	>	{
467	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
468	>	error = 1;
469	>	}
470	>
471	>
472	>	/* checks for dependences among options */
473	>
474	>	return error;
475	>	}
476	>
477	>
478	>	static char *package_name = 0;
479	>
480	>	/**
481	>	* @brief updates an option
482	>	* @param field the generic pointer to the field to update
483	>	* @param orig_field the pointer to the orig field
484	>	* @param field_given the pointer to the number of occurrence of this option
485	>	* @param prev_given the pointer to the number of occurrence already seen
486	>	* @param value the argument for this option (if null no arg was specified)
487	>	* @param possible_values the possible values for this option (if specified)
488	>	* @param default_value the default value (in case the option only accepts fixed values)
489	>	* @param arg_type the type of this option
490	>	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
491	>	* @param override @see cmdline_parser_params.override
492	>	* @param no_free whether to free a possible previous value
493	>	* @param multiple_option whether this is a multiple option
494	>	* @param long_opt the corresponding long option
495	>	* @param short_opt the corresponding short option (or '-' if none)
496	>	* @param additional_error possible further error specification
497	>	*/
498	>	static
499	>	int update_arg(void *field, char **orig_field,
500	>	unsigned int *field_given, unsigned int *prev_given,
501	>	char *value, const char *possible_values[],
502	>	const char *default_value,
503	>	cmdline_parser_arg_type arg_type,
504	>	int check_ambiguity, int override,
505	>	int no_free, int multiple_option,
506	>	const char *long_opt, char short_opt,
507	>	const char *additional_error)
508	>	{
509	>	char *stop_char = 0;
510	>	const char *val = value;
511	>	int found;
512	>	char **string_field;
513	>	FIX_UNUSED (field);
514	>
515	>	stop_char = 0;
516	>	found = 0;
517	>
518	>	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
519	>	{
520	>	if (short_opt != '-')
521	>	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
522	>	package_name, long_opt, short_opt,
523	>	(additional_error ? additional_error : ""));
524	>	else
525	>	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
526	>	package_name, long_opt,
527	>	(additional_error ? additional_error : ""));
528	>	return 1; /* failure */
529	>	}
530
531	+	FIX_UNUSED (default_value);
532	+
533	+	if (field_given && *field_given && ! override)
534	+	return 0;
535	+	if (prev_given)
536	+	(*prev_given)++;
537	+	if (field_given)
538	+	(*field_given)++;
539	+	if (possible_values)
540	+	val = possible_values[found];
541	+
542	+	switch(arg_type) {
543	+	case ARG_INT:
544	+	if (val) *((int *)field) = strtol (val, &stop_char, 0);
545	+	break;
546	+	case ARG_STRING:
547	+	if (val) {
548	+	string_field = (char **)field;
549	+	if (!no_free && *string_field)
550	+	free (*string_field); /* free previous string */
551	+	*string_field = gengetopt_strdup (val);
552	+	}
553	+	break;
554	+	default:
555	+	break;
556	+	};
557	+
558	+	/* check numeric conversion */
559	+	switch(arg_type) {
560	+	case ARG_INT:
561	+	if (val && !(stop_char && *stop_char == '\0')) {
562	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
563	+	return 1; /* failure */
564	+	}
565	+	break;
566	+	default:
567	+	;
568	+	};
569	+
570	+	/* store the original value */
571	+	switch(arg_type) {
572	+	case ARG_NO:
573	+	break;
574	+	default:
575	+	if (value && orig_field) {
576	+	if (no_free) {
577	+	*orig_field = value;
578	+	} else {
579	+	if (*orig_field)
580	+	free (*orig_field); /* free previous string */
581	+	*orig_field = gengetopt_strdup (value);
582	+	}
583	+	}
584	+	};
585	+
586	+	return 0; /* OK */
587	+	}
588	+
589	+
590	+	int
591	+	cmdline_parser_internal (
592	+	int argc, char **argv, struct gengetopt_args_info *args_info,
593	+	struct cmdline_parser_params *params, const char *additional_error)
594	+	{
595	+	int c;        /* Character of the parsed option.  */
596	+
597	+	int error = 0;
598	+	struct gengetopt_args_info local_args_info;
599	+
600	+	int override;
601	+	int initialize;
602	+	int check_required;
603	+	int check_ambiguity;
604	+
605	+	package_name = argv[0];
606	+
607	+	override = params->override;
608	+	initialize = params->initialize;
609	+	check_required = params->check_required;
610	+	check_ambiguity = params->check_ambiguity;
611	+
612	+	if (initialize)
613	+	cmdline_parser_init (args_info);
614	+
615	+	cmdline_parser_init (&local_args_info);
616	+
617		optarg = 0;
618	<	optind = 1;
619	<	opterr = 1;
618	>	optind = 0;
619	>	opterr = params->print_errors;
620		optopt = '?';
621
622		while (1)
623		{
624		int option_index = 0;
100	–	char *stop_char;
625
626		static struct option long_options[] = {
627		{ "help",       0, NULL, 'h' },
#	Line 106 | Line 630 | cmdline_parser (int argc, char * const *argv, struct g
630		{ "output",     1, NULL, 'o' },
631		{ "sele1",      1, NULL, 0 },
632		{ "sele2",      1, NULL, 0 },
633	+	{ "order",      1, NULL, 0 },
634	+	{ "memory",     1, NULL, 'm' },
635	+	{ "selecorr",   0, NULL, 's' },
636		{ "rcorr",      0, NULL, 'r' },
637		{ "vcorr",      0, NULL, 'v' },
638		{ "dcorr",      0, NULL, 'd' },
639	<	{ NULL, 0, NULL, 0 }
639	>	{ "lcorr",      0, NULL, 'l' },
640	>	{ "sdcorr",     0, NULL, 'M' },
641	>	{ "r_rcorr",    0, NULL, 0 },
642	>	{ "thetacorr",  0, NULL, 0 },
643	>	{ "drcorr",     0, NULL, 0 },
644	>	{ "helfandEcorr",       0, NULL, 0 },
645	>	{ "momentum",   0, NULL, 'p' },
646	>	{ "stresscorr", 0, NULL, 0 },
647	>	{ 0,  0, 0, 0 }
648		};
649
650	<	stop_char = 0;
116	<	c = getopt_long (argc, argv, "hVi:o:rvd", long_options, &option_index);
650	>	c = getopt_long (argc, argv, "hVi:o:m:srvdlMp", long_options, &option_index);
651
652		if (c == -1) break;       /* Exit from `while (1)' loop.  */
653
654		switch (c)
655		{
656		case 'h':       /* Print help and exit.  */
123	–	clear_args ();
657		cmdline_parser_print_help ();
658	+	cmdline_parser_free (&local_args_info);
659		exit (EXIT_SUCCESS);
660
661		case 'V':       /* Print version and exit.  */
128	–	clear_args ();
662		cmdline_parser_print_version ();
663	+	cmdline_parser_free (&local_args_info);
664		exit (EXIT_SUCCESS);
665
666		case 'i':       /* input dump file.  */
667	<	if (args_info->input_given)
668	<	{
669	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
670	<	clear_args ();
671	<	exit (EXIT_FAILURE);
672	<	}
673	<	args_info->input_given = 1;
674	<	args_info->input_arg = gengetopt_strdup (optarg);
667	>
668	>
669	>	if (update_arg( (void *)&(args_info->input_arg),
670	>	&(args_info->input_orig), &(args_info->input_given),
671	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
672	>	check_ambiguity, override, 0, 0,
673	>	"input", 'i',
674	>	additional_error))
675	>	goto failure;
676	>
677		break;
142	–
678		case 'o':       /* output file name.  */
679	<	if (args_info->output_given)
680	<	{
681	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
682	<	clear_args ();
683	<	exit (EXIT_FAILURE);
684	<	}
685	<	args_info->output_given = 1;
686	<	args_info->output_arg = gengetopt_strdup (optarg);
679	>
680	>
681	>	if (update_arg( (void *)&(args_info->output_arg),
682	>	&(args_info->output_orig), &(args_info->output_given),
683	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
684	>	check_ambiguity, override, 0, 0,
685	>	"output", 'o',
686	>	additional_error))
687	>	goto failure;
688	>
689		break;
690	<
690	>	case 'm':       /* Available memory (defaults to 2G).  */
691	>
692	>
693	>	if (update_arg( (void *)&(args_info->memory_arg),
694	>	&(args_info->memory_orig), &(args_info->memory_given),
695	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
696	>	check_ambiguity, override, 0, 0,
697	>	"memory", 'm',
698	>	additional_error))
699	>	goto failure;
700	>
701	>	break;
702	>	case 's':       /* selection correlation function.  */
703	>
704	>	if (args_info->dynamicProps_group_counter && override)
705	>	reset_group_dynamicProps (args_info);
706	>	args_info->dynamicProps_group_counter += 1;
707	>
708	>	if (update_arg( 0 ,
709	>	0 , &(args_info->selecorr_given),
710	>	&(local_args_info.selecorr_given), optarg, 0, 0, ARG_NO,
711	>	check_ambiguity, override, 0, 0,
712	>	"selecorr", 's',
713	>	additional_error))
714	>	goto failure;
715	>
716	>	break;
717		case 'r':       /* rmsd.  */
718	<	if (args_info->rcorr_given)
719	<	{
720	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
721	<	clear_args ();
722	<	exit (EXIT_FAILURE);
723	<	}
724	<	args_info->rcorr_given = 1;
725	<	dynamicProps_group_counter += 1;
726	<	break;
727	<
718	>
719	>	if (args_info->dynamicProps_group_counter && override)
720	>	reset_group_dynamicProps (args_info);
721	>	args_info->dynamicProps_group_counter += 1;
722	>
723	>	if (update_arg( 0 ,
724	>	0 , &(args_info->rcorr_given),
725	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
726	>	check_ambiguity, override, 0, 0,
727	>	"rcorr", 'r',
728	>	additional_error))
729	>	goto failure;
730	>
731	>	break;
732		case 'v':       /* velocity correlation function.  */
733	<	if (args_info->vcorr_given)
734	<	{
735	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
736	<	clear_args ();
737	<	exit (EXIT_FAILURE);
738	<	}
739	<	args_info->vcorr_given = 1;
740	<	dynamicProps_group_counter += 1;
741	<	break;
742	<
733	>
734	>	if (args_info->dynamicProps_group_counter && override)
735	>	reset_group_dynamicProps (args_info);
736	>	args_info->dynamicProps_group_counter += 1;
737	>
738	>	if (update_arg( 0 ,
739	>	0 , &(args_info->vcorr_given),
740	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
741	>	check_ambiguity, override, 0, 0,
742	>	"vcorr", 'v',
743	>	additional_error))
744	>	goto failure;
745	>
746	>	break;
747		case 'd':       /* dipole correlation function.  */
748	<	if (args_info->dcorr_given)
749	<	{
750	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
751	<	clear_args ();
752	<	exit (EXIT_FAILURE);
753	<	}
754	<	args_info->dcorr_given = 1;
755	<	dynamicProps_group_counter += 1;
756	<	break;
757	<
748	>
749	>	if (args_info->dynamicProps_group_counter && override)
750	>	reset_group_dynamicProps (args_info);
751	>	args_info->dynamicProps_group_counter += 1;
752	>
753	>	if (update_arg( 0 ,
754	>	0 , &(args_info->dcorr_given),
755	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
756	>	check_ambiguity, override, 0, 0,
757	>	"dcorr", 'd',
758	>	additional_error))
759	>	goto failure;
760	>
761	>	break;
762	>	case 'l':       /* Lengendre correlation function.  */
763	>
764	>	if (args_info->dynamicProps_group_counter && override)
765	>	reset_group_dynamicProps (args_info);
766	>	args_info->dynamicProps_group_counter += 1;
767	>
768	>	if (update_arg( 0 ,
769	>	0 , &(args_info->lcorr_given),
770	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
771	>	check_ambiguity, override, 0, 0,
772	>	"lcorr", 'l',
773	>	additional_error))
774	>	goto failure;
775	>
776	>	break;
777	>	case 'M':       /* System dipole correlation function.  */
778	>
779	>	if (args_info->dynamicProps_group_counter && override)
780	>	reset_group_dynamicProps (args_info);
781	>	args_info->dynamicProps_group_counter += 1;
782	>
783	>	if (update_arg( 0 ,
784	>	0 , &(args_info->sdcorr_given),
785	>	&(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
786	>	check_ambiguity, override, 0, 0,
787	>	"sdcorr", 'M',
788	>	additional_error))
789	>	goto failure;
790	>
791	>	break;
792	>	case 'p':       /* Helfand momentum for viscosity.  */
793	>
794	>	if (args_info->dynamicProps_group_counter && override)
795	>	reset_group_dynamicProps (args_info);
796	>	args_info->dynamicProps_group_counter += 1;
797	>
798	>	if (update_arg( 0 ,
799	>	0 , &(args_info->momentum_given),
800	>	&(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
801	>	check_ambiguity, override, 0, 0,
802	>	"momentum", 'p',
803	>	additional_error))
804	>	goto failure;
805	>
806	>	break;
807
808		case 0: /* Long option with no short option */
809		/* select first stuntdouble set.  */
810		if (strcmp (long_options[option_index].name, "sele1") == 0)
811		{
192	–	if (args_info->sele1_given)
193	–	{
194	–	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
195	–	clear_args ();
196	–	exit (EXIT_FAILURE);
197	–	}
198	–	args_info->sele1_given = 1;
199	–	args_info->sele1_arg = gengetopt_strdup (optarg);
200	–	break;
201	–	}
812
813	+
814	+	if (update_arg( (void *)&(args_info->sele1_arg),
815	+	&(args_info->sele1_orig), &(args_info->sele1_given),
816	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
817	+	check_ambiguity, override, 0, 0,
818	+	"sele1", '-',
819	+	additional_error))
820	+	goto failure;
821	+
822	+	}
823		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
824		else if (strcmp (long_options[option_index].name, "sele2") == 0)
825		{
826	<	if (args_info->sele2_given)
827	<	{
828	<	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
829	<	clear_args ();
830	<	exit (EXIT_FAILURE);
831	<	}
832	<	args_info->sele2_given = 1;
833	<	args_info->sele2_arg = gengetopt_strdup (optarg);
834	<	break;
826	>
827	>
828	>	if (update_arg( (void *)&(args_info->sele2_arg),
829	>	&(args_info->sele2_orig), &(args_info->sele2_given),
830	>	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
831	>	check_ambiguity, override, 0, 0,
832	>	"sele2", '-',
833	>	additional_error))
834	>	goto failure;
835	>
836		}
837	+	/* Lengendre Polynomial Order.  */
838	+	else if (strcmp (long_options[option_index].name, "order") == 0)
839	+	{
840
841	<
841	>
842	>	if (update_arg( (void *)&(args_info->order_arg),
843	>	&(args_info->order_orig), &(args_info->order_given),
844	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
845	>	check_ambiguity, override, 0, 0,
846	>	"order", '-',
847	>	additional_error))
848	>	goto failure;
849	>
850	>	}
851	>	/* Radial rmsd.  */
852	>	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
853	>	{
854	>
855	>	if (args_info->dynamicProps_group_counter && override)
856	>	reset_group_dynamicProps (args_info);
857	>	args_info->dynamicProps_group_counter += 1;
858	>
859	>	if (update_arg( 0 ,
860	>	0 , &(args_info->r_rcorr_given),
861	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
862	>	check_ambiguity, override, 0, 0,
863	>	"r_rcorr", '-',
864	>	additional_error))
865	>	goto failure;
866	>
867	>	}
868	>	/* Angular rmsd.  */
869	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
870	>	{
871	>
872	>	if (args_info->dynamicProps_group_counter && override)
873	>	reset_group_dynamicProps (args_info);
874	>	args_info->dynamicProps_group_counter += 1;
875	>
876	>	if (update_arg( 0 ,
877	>	0 , &(args_info->thetacorr_given),
878	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
879	>	check_ambiguity, override, 0, 0,
880	>	"thetacorr", '-',
881	>	additional_error))
882	>	goto failure;
883	>
884	>	}
885	>	/* Directional rmsd for particles with unit vectors.  */
886	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
887	>	{
888	>
889	>	if (args_info->dynamicProps_group_counter && override)
890	>	reset_group_dynamicProps (args_info);
891	>	args_info->dynamicProps_group_counter += 1;
892	>
893	>	if (update_arg( 0 ,
894	>	0 , &(args_info->drcorr_given),
895	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
896	>	check_ambiguity, override, 0, 0,
897	>	"drcorr", '-',
898	>	additional_error))
899	>	goto failure;
900	>
901	>	}
902	>	/* Helfand moment for thermal conductvity.  */
903	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
904	>	{
905	>
906	>	if (args_info->dynamicProps_group_counter && override)
907	>	reset_group_dynamicProps (args_info);
908	>	args_info->dynamicProps_group_counter += 1;
909	>
910	>	if (update_arg( 0 ,
911	>	0 , &(args_info->helfandEcorr_given),
912	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
913	>	check_ambiguity, override, 0, 0,
914	>	"helfandEcorr", '-',
915	>	additional_error))
916	>	goto failure;
917	>
918	>	}
919	>	/* Stress tensor correlation function.  */
920	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
921	>	{
922	>
923	>	if (args_info->dynamicProps_group_counter && override)
924	>	reset_group_dynamicProps (args_info);
925	>	args_info->dynamicProps_group_counter += 1;
926	>
927	>	if (update_arg( 0 ,
928	>	0 , &(args_info->stresscorr_given),
929	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
930	>	check_ambiguity, override, 0, 0,
931	>	"stresscorr", '-',
932	>	additional_error))
933	>	goto failure;
934	>
935	>	}
936	>
937	>	break;
938		case '?':       /* Invalid option.  */
939		/* `getopt_long' already printed an error message.  */
940	<	exit (EXIT_FAILURE);
940	>	goto failure;
941
942		default:        /* bug: option not considered.  */
943	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
943	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
944		abort ();
945		} /* switch */
946		} /* while */
947
948	<	if ( dynamicProps_group_counter != 1)
948	>	if (args_info->dynamicProps_group_counter > 1)
949		{
950	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
951	<	missing_required_options = 1;
950	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
951	>	error = 1;
952		}
953
954
955	<	if (! args_info->input_given)
955	>
956	>	if (check_required)
957		{
958	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
238	<	missing_required_options = 1;
958	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
959		}
240	–	if ( missing_required_options )
241	–	exit (EXIT_FAILURE);
960
961	+	cmdline_parser_release (&local_args_info);
962	+
963	+	if ( error )
964	+	return (EXIT_FAILURE);
965	+
966	+	if (optind < argc)
967	+	{
968	+	int i = 0 ;
969	+	int found_prog_name = 0;
970	+	/* whether program name, i.e., argv[0], is in the remaining args
971	+	(this may happen with some implementations of getopt,
972	+	but surely not with the one included by gengetopt) */
973	+
974	+	i = optind;
975	+	while (i < argc)
976	+	if (argv[i++] == argv[0]) {
977	+	found_prog_name = 1;
978	+	break;
979	+	}
980	+	i = 0;
981	+
982	+	args_info->inputs_num = argc - optind - found_prog_name;
983	+	args_info->inputs =
984	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
985	+	while (optind < argc)
986	+	if (argv[optind++] != argv[0])
987	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
988	+	}
989	+
990		return 0;
991	+
992	+	failure:
993	+
994	+	cmdline_parser_release (&local_args_info);
995	+	return (EXIT_FAILURE);
996		}

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords), Revision 320 by tim, Sun Feb 13 07:14:59 2005 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (property svn:keywords), Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

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