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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents), Revision 507 by gezelter, Fri Apr 15 22:04:00 2005 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (file contents), Revision 1811 by gezelter, Fri Nov 16 15:12:21 2012 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/bin/gengetopt -F DynamicPropsCmd
4	>	gengetopt --file-name=DynamicPropsCmd --unamed-opts
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#include <getopt.h>
25
26		#include "DynamicPropsCmd.h"
27
28	+	const char *gengetopt_args_info_purpose = "";
29	+
30	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31	+
32	+	const char *gengetopt_args_info_description = "";
33	+
34	+	const char *gengetopt_args_info_help[] = {
35	+	"  -h, --help                    Print help and exit",
36	+	"  -V, --version                 Print version and exit",
37	+	"  -i, --input=filename          input dump file",
38	+	"  -o, --output=filename         output file name",
39	+	"      --sele1=selection script  select first stuntdouble set",
40	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41	+	"      --order=INT               Lengendre Polynomial Order",
42	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
43	+	"\n Group: dynamicProps\n   an option of this group is required",
44	+	"  -s, --selecorr                selection correlation function",
45	+	"  -r, --rcorr                   rmsd",
46	+	"  -v, --vcorr                   velocity correlation function",
47	+	"  -d, --dcorr                   dipole correlation function",
48	+	"  -l, --lcorr                   Lengendre correlation function",
49	+	"  -M, --sdcorr                  System dipole correlation function",
50	+	"      --r_rcorr                 Radial rmsd",
51	+	"      --thetacorr               Angular rmsd",
52	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
53	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
54	+	"  -p, --momentum                Helfand momentum for viscosity",
55	+	"      --stresscorr              Stress tensor correlation function",
56	+	0
57	+	};
58	+
59	+	typedef enum {ARG_NO
60	+	, ARG_STRING
61	+	, ARG_INT
62	+	} cmdline_parser_arg_type;
63	+
64	+	static
65	+	void clear_given (struct gengetopt_args_info *args_info);
66	+	static
67	+	void clear_args (struct gengetopt_args_info *args_info);
68	+
69	+	static int
70	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
71	+	struct cmdline_parser_params *params, const char *additional_error);
72	+
73	+	static int
74	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
75	+
76	+	static char *
77	+	gengetopt_strdup (const char *s);
78	+
79	+	static
80	+	void clear_given (struct gengetopt_args_info *args_info)
81	+	{
82	+	args_info->help_given = 0 ;
83	+	args_info->version_given = 0 ;
84	+	args_info->input_given = 0 ;
85	+	args_info->output_given = 0 ;
86	+	args_info->sele1_given = 0 ;
87	+	args_info->sele2_given = 0 ;
88	+	args_info->order_given = 0 ;
89	+	args_info->memory_given = 0 ;
90	+	args_info->selecorr_given = 0 ;
91	+	args_info->rcorr_given = 0 ;
92	+	args_info->vcorr_given = 0 ;
93	+	args_info->dcorr_given = 0 ;
94	+	args_info->lcorr_given = 0 ;
95	+	args_info->sdcorr_given = 0 ;
96	+	args_info->r_rcorr_given = 0 ;
97	+	args_info->thetacorr_given = 0 ;
98	+	args_info->drcorr_given = 0 ;
99	+	args_info->helfandEcorr_given = 0 ;
100	+	args_info->momentum_given = 0 ;
101	+	args_info->stresscorr_given = 0 ;
102	+	args_info->dynamicProps_group_counter = 0 ;
103	+	}
104	+
105	+	static
106	+	void clear_args (struct gengetopt_args_info *args_info)
107	+	{
108	+	FIX_UNUSED (args_info);
109	+	args_info->input_arg = NULL;
110	+	args_info->input_orig = NULL;
111	+	args_info->output_arg = NULL;
112	+	args_info->output_orig = NULL;
113	+	args_info->sele1_arg = NULL;
114	+	args_info->sele1_orig = NULL;
115	+	args_info->sele2_arg = NULL;
116	+	args_info->sele2_orig = NULL;
117	+	args_info->order_orig = NULL;
118	+	args_info->memory_arg = gengetopt_strdup ("2G");
119	+	args_info->memory_orig = NULL;
120	+
121	+	}
122	+
123	+	static
124	+	void init_args_info(struct gengetopt_args_info *args_info)
125	+	{
126	+
127	+
128	+	args_info->help_help = gengetopt_args_info_help[0] ;
129	+	args_info->version_help = gengetopt_args_info_help[1] ;
130	+	args_info->input_help = gengetopt_args_info_help[2] ;
131	+	args_info->output_help = gengetopt_args_info_help[3] ;
132	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
133	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
134	+	args_info->order_help = gengetopt_args_info_help[6] ;
135	+	args_info->memory_help = gengetopt_args_info_help[7] ;
136	+	args_info->selecorr_help = gengetopt_args_info_help[9] ;
137	+	args_info->rcorr_help = gengetopt_args_info_help[10] ;
138	+	args_info->vcorr_help = gengetopt_args_info_help[11] ;
139	+	args_info->dcorr_help = gengetopt_args_info_help[12] ;
140	+	args_info->lcorr_help = gengetopt_args_info_help[13] ;
141	+	args_info->sdcorr_help = gengetopt_args_info_help[14] ;
142	+	args_info->r_rcorr_help = gengetopt_args_info_help[15] ;
143	+	args_info->thetacorr_help = gengetopt_args_info_help[16] ;
144	+	args_info->drcorr_help = gengetopt_args_info_help[17] ;
145	+	args_info->helfandEcorr_help = gengetopt_args_info_help[18] ;
146	+	args_info->momentum_help = gengetopt_args_info_help[19] ;
147	+	args_info->stresscorr_help = gengetopt_args_info_help[20] ;
148	+
149	+	}
150	+
151		void
152		cmdline_parser_print_version (void)
153		{
154	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
154	>	printf ("%s %s\n",
155	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
156	>	CMDLINE_PARSER_VERSION);
157		}
158
159	+	static void print_help_common(void) {
160	+	cmdline_parser_print_version ();
161	+
162	+	if (strlen(gengetopt_args_info_purpose) > 0)
163	+	printf("\n%s\n", gengetopt_args_info_purpose);
164	+
165	+	if (strlen(gengetopt_args_info_usage) > 0)
166	+	printf("\n%s\n", gengetopt_args_info_usage);
167	+
168	+	printf("\n");
169	+
170	+	if (strlen(gengetopt_args_info_description) > 0)
171	+	printf("%s\n\n", gengetopt_args_info_description);
172	+	}
173	+
174		void
175		cmdline_parser_print_help (void)
176		{
177	<	cmdline_parser_print_version ();
178	<	printf("\n"
179	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
180	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("\n");
45	<	printf(" Group: dynamicProps  an option of this group is required\n");
46	<	printf("  -r, --rcorr                   rmsd\n");
47	<	printf("  -v, --vcorr                   velocity correlation function\n");
48	<	printf("  -d, --dcorr                   dipole correlation function\n");
177	>	int i = 0;
178	>	print_help_common();
179	>	while (gengetopt_args_info_help[i])
180	>	printf("%s\n", gengetopt_args_info_help[i++]);
181		}
182
183	+	void
184	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
185	+	{
186	+	clear_given (args_info);
187	+	clear_args (args_info);
188	+	init_args_info (args_info);
189
190	<	static char *gengetopt_strdup (const char *s);
190	>	args_info->inputs = 0;
191	>	args_info->inputs_num = 0;
192	>	}
193
194	<	/* gengetopt_strdup() */
195	<	/* strdup.c replacement of strdup, which is not standard */
194	>	void
195	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
196	>	{
197	>	if (params)
198	>	{
199	>	params->override = 0;
200	>	params->initialize = 1;
201	>	params->check_required = 1;
202	>	params->check_ambiguity = 0;
203	>	params->print_errors = 1;
204	>	}
205	>	}
206	>
207	>	struct cmdline_parser_params *
208	>	cmdline_parser_params_create(void)
209	>	{
210	>	struct cmdline_parser_params *params =
211	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
212	>	cmdline_parser_params_init(params);
213	>	return params;
214	>	}
215	>
216	>	static void
217	>	free_string_field (char **s)
218	>	{
219	>	if (*s)
220	>	{
221	>	free (*s);
222	>	*s = 0;
223	>	}
224	>	}
225	>
226	>
227	>	static void
228	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
229	>	{
230	>	unsigned int i;
231	>	free_string_field (&(args_info->input_arg));
232	>	free_string_field (&(args_info->input_orig));
233	>	free_string_field (&(args_info->output_arg));
234	>	free_string_field (&(args_info->output_orig));
235	>	free_string_field (&(args_info->sele1_arg));
236	>	free_string_field (&(args_info->sele1_orig));
237	>	free_string_field (&(args_info->sele2_arg));
238	>	free_string_field (&(args_info->sele2_orig));
239	>	free_string_field (&(args_info->order_orig));
240	>	free_string_field (&(args_info->memory_arg));
241	>	free_string_field (&(args_info->memory_orig));
242	>
243	>
244	>	for (i = 0; i < args_info->inputs_num; ++i)
245	>	free (args_info->inputs [i]);
246	>
247	>	if (args_info->inputs_num)
248	>	free (args_info->inputs);
249	>
250	>	clear_given (args_info);
251	>	}
252	>
253	>
254	>	static void
255	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
256	>	{
257	>	FIX_UNUSED (values);
258	>	if (arg) {
259	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
260	>	} else {
261	>	fprintf(outfile, "%s\n", opt);
262	>	}
263	>	}
264	>
265	>
266	>	int
267	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
268	>	{
269	>	int i = 0;
270	>
271	>	if (!outfile)
272	>	{
273	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
274	>	return EXIT_FAILURE;
275	>	}
276	>
277	>	if (args_info->help_given)
278	>	write_into_file(outfile, "help", 0, 0 );
279	>	if (args_info->version_given)
280	>	write_into_file(outfile, "version", 0, 0 );
281	>	if (args_info->input_given)
282	>	write_into_file(outfile, "input", args_info->input_orig, 0);
283	>	if (args_info->output_given)
284	>	write_into_file(outfile, "output", args_info->output_orig, 0);
285	>	if (args_info->sele1_given)
286	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
287	>	if (args_info->sele2_given)
288	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
289	>	if (args_info->order_given)
290	>	write_into_file(outfile, "order", args_info->order_orig, 0);
291	>	if (args_info->memory_given)
292	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
293	>	if (args_info->selecorr_given)
294	>	write_into_file(outfile, "selecorr", 0, 0 );
295	>	if (args_info->rcorr_given)
296	>	write_into_file(outfile, "rcorr", 0, 0 );
297	>	if (args_info->vcorr_given)
298	>	write_into_file(outfile, "vcorr", 0, 0 );
299	>	if (args_info->dcorr_given)
300	>	write_into_file(outfile, "dcorr", 0, 0 );
301	>	if (args_info->lcorr_given)
302	>	write_into_file(outfile, "lcorr", 0, 0 );
303	>	if (args_info->sdcorr_given)
304	>	write_into_file(outfile, "sdcorr", 0, 0 );
305	>	if (args_info->r_rcorr_given)
306	>	write_into_file(outfile, "r_rcorr", 0, 0 );
307	>	if (args_info->thetacorr_given)
308	>	write_into_file(outfile, "thetacorr", 0, 0 );
309	>	if (args_info->drcorr_given)
310	>	write_into_file(outfile, "drcorr", 0, 0 );
311	>	if (args_info->helfandEcorr_given)
312	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
313	>	if (args_info->momentum_given)
314	>	write_into_file(outfile, "momentum", 0, 0 );
315	>	if (args_info->stresscorr_given)
316	>	write_into_file(outfile, "stresscorr", 0, 0 );
317	>
318	>
319	>	i = EXIT_SUCCESS;
320	>	return i;
321	>	}
322	>
323	>	int
324	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
325	>	{
326	>	FILE *outfile;
327	>	int i = 0;
328	>
329	>	outfile = fopen(filename, "w");
330	>
331	>	if (!outfile)
332	>	{
333	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
334	>	return EXIT_FAILURE;
335	>	}
336	>
337	>	i = cmdline_parser_dump(outfile, args_info);
338	>	fclose (outfile);
339	>
340	>	return i;
341	>	}
342	>
343	>	void
344	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
345	>	{
346	>	cmdline_parser_release (args_info);
347	>	}
348	>
349	>	/** @brief replacement of strdup, which is not standard */
350		char *
351		gengetopt_strdup (const char *s)
352		{
353	<	char *result = (char*)malloc(strlen(s) + 1);
353	>	char *result = 0;
354	>	if (!s)
355	>	return result;
356	>
357	>	result = (char*)malloc(strlen(s) + 1);
358		if (result == (char*)0)
359		return (char*)0;
360		strcpy(result, s);
361		return result;
362		}
363
364	<	int
365	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
364	>	static void
365	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
366		{
367	<	int c;        /* Character of the parsed option.  */
368	<	int missing_required_options = 0;
71	<	int dynamicProps_group_counter = 0;
367	>	if (! args_info->dynamicProps_group_counter)
368	>	return;
369
370	<
74	<	args_info->help_given = 0 ;
75	<	args_info->version_given = 0 ;
76	<	args_info->input_given = 0 ;
77	<	args_info->output_given = 0 ;
78	<	args_info->sele1_given = 0 ;
79	<	args_info->sele2_given = 0 ;
370	>	args_info->selecorr_given = 0 ;
371		args_info->rcorr_given = 0 ;
372		args_info->vcorr_given = 0 ;
373		args_info->dcorr_given = 0 ;
374	<	#define clear_args() {                          \
375	<	args_info->input_arg = NULL;                \
376	<	args_info->output_arg = NULL;               \
377	<	args_info->sele1_arg = NULL;                \
378	<	args_info->sele2_arg = NULL;                \
379	<	}
374	>	args_info->lcorr_given = 0 ;
375	>	args_info->sdcorr_given = 0 ;
376	>	args_info->r_rcorr_given = 0 ;
377	>	args_info->thetacorr_given = 0 ;
378	>	args_info->drcorr_given = 0 ;
379	>	args_info->helfandEcorr_given = 0 ;
380	>	args_info->momentum_given = 0 ;
381	>	args_info->stresscorr_given = 0 ;
382
383	<	clear_args();
383	>	args_info->dynamicProps_group_counter = 0;
384	>	}
385	>
386	>	int
387	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
388	>	{
389	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
390	>	}
391	>
392	>	int
393	>	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
394	>	struct cmdline_parser_params *params)
395	>	{
396	>	int result;
397	>	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
398	>
399	>	if (result == EXIT_FAILURE)
400	>	{
401	>	cmdline_parser_free (args_info);
402	>	exit (EXIT_FAILURE);
403	>	}
404	>
405	>	return result;
406	>	}
407	>
408	>	int
409	>	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
410	>	{
411	>	int result;
412	>	struct cmdline_parser_params params;
413	>
414	>	params.override = override;
415	>	params.initialize = initialize;
416	>	params.check_required = check_required;
417	>	params.check_ambiguity = 0;
418	>	params.print_errors = 1;
419	>
420	>	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
421	>
422	>	if (result == EXIT_FAILURE)
423	>	{
424	>	cmdline_parser_free (args_info);
425	>	exit (EXIT_FAILURE);
426	>	}
427	>
428	>	return result;
429	>	}
430	>
431	>	int
432	>	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
433	>	{
434	>	int result = EXIT_SUCCESS;
435	>
436	>	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
437	>	result = EXIT_FAILURE;
438	>
439	>	if (result == EXIT_FAILURE)
440	>	{
441	>	cmdline_parser_free (args_info);
442	>	exit (EXIT_FAILURE);
443	>	}
444	>
445	>	return result;
446	>	}
447	>
448	>	int
449	>	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
450	>	{
451	>	int error = 0;
452	>	FIX_UNUSED (additional_error);
453	>
454	>	/* checks for required options */
455	>	if (! args_info->input_given)
456	>	{
457	>	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
458	>	error = 1;
459	>	}
460	>
461	>	if (args_info->dynamicProps_group_counter == 0)
462	>	{
463	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
464	>	error = 1;
465	>	}
466	>
467	>
468	>	/* checks for dependences among options */
469	>
470	>	return error;
471	>	}
472	>
473	>
474	>	static char *package_name = 0;
475	>
476	>	/**
477	>	* @brief updates an option
478	>	* @param field the generic pointer to the field to update
479	>	* @param orig_field the pointer to the orig field
480	>	* @param field_given the pointer to the number of occurrence of this option
481	>	* @param prev_given the pointer to the number of occurrence already seen
482	>	* @param value the argument for this option (if null no arg was specified)
483	>	* @param possible_values the possible values for this option (if specified)
484	>	* @param default_value the default value (in case the option only accepts fixed values)
485	>	* @param arg_type the type of this option
486	>	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
487	>	* @param override @see cmdline_parser_params.override
488	>	* @param no_free whether to free a possible previous value
489	>	* @param multiple_option whether this is a multiple option
490	>	* @param long_opt the corresponding long option
491	>	* @param short_opt the corresponding short option (or '-' if none)
492	>	* @param additional_error possible further error specification
493	>	*/
494	>	static
495	>	int update_arg(void *field, char **orig_field,
496	>	unsigned int *field_given, unsigned int *prev_given,
497	>	char *value, const char *possible_values[],
498	>	const char *default_value,
499	>	cmdline_parser_arg_type arg_type,
500	>	int check_ambiguity, int override,
501	>	int no_free, int multiple_option,
502	>	const char *long_opt, char short_opt,
503	>	const char *additional_error)
504	>	{
505	>	char *stop_char = 0;
506	>	const char *val = value;
507	>	int found;
508	>	char **string_field;
509	>	FIX_UNUSED (field);
510	>
511	>	stop_char = 0;
512	>	found = 0;
513	>
514	>	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
515	>	{
516	>	if (short_opt != '-')
517	>	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
518	>	package_name, long_opt, short_opt,
519	>	(additional_error ? additional_error : ""));
520	>	else
521	>	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
522	>	package_name, long_opt,
523	>	(additional_error ? additional_error : ""));
524	>	return 1; /* failure */
525	>	}
526	>
527	>	FIX_UNUSED (default_value);
528	>
529	>	if (field_given && *field_given && ! override)
530	>	return 0;
531	>	if (prev_given)
532	>	(*prev_given)++;
533	>	if (field_given)
534	>	(*field_given)++;
535	>	if (possible_values)
536	>	val = possible_values[found];
537
538	+	switch(arg_type) {
539	+	case ARG_INT:
540	+	if (val) *((int *)field) = strtol (val, &stop_char, 0);
541	+	break;
542	+	case ARG_STRING:
543	+	if (val) {
544	+	string_field = (char **)field;
545	+	if (!no_free && *string_field)
546	+	free (*string_field); /* free previous string */
547	+	*string_field = gengetopt_strdup (val);
548	+	}
549	+	break;
550	+	default:
551	+	break;
552	+	};
553	+
554	+	/* check numeric conversion */
555	+	switch(arg_type) {
556	+	case ARG_INT:
557	+	if (val && !(stop_char && *stop_char == '\0')) {
558	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
559	+	return 1; /* failure */
560	+	}
561	+	break;
562	+	default:
563	+	;
564	+	};
565	+
566	+	/* store the original value */
567	+	switch(arg_type) {
568	+	case ARG_NO:
569	+	break;
570	+	default:
571	+	if (value && orig_field) {
572	+	if (no_free) {
573	+	*orig_field = value;
574	+	} else {
575	+	if (*orig_field)
576	+	free (*orig_field); /* free previous string */
577	+	*orig_field = gengetopt_strdup (value);
578	+	}
579	+	}
580	+	};
581	+
582	+	return 0; /* OK */
583	+	}
584	+
585	+
586	+	int
587	+	cmdline_parser_internal (
588	+	int argc, char **argv, struct gengetopt_args_info *args_info,
589	+	struct cmdline_parser_params *params, const char *additional_error)
590	+	{
591	+	int c;        /* Character of the parsed option.  */
592	+
593	+	int error = 0;
594	+	struct gengetopt_args_info local_args_info;
595	+
596	+	int override;
597	+	int initialize;
598	+	int check_required;
599	+	int check_ambiguity;
600	+
601	+	package_name = argv[0];
602	+
603	+	override = params->override;
604	+	initialize = params->initialize;
605	+	check_required = params->check_required;
606	+	check_ambiguity = params->check_ambiguity;
607	+
608	+	if (initialize)
609	+	cmdline_parser_init (args_info);
610	+
611	+	cmdline_parser_init (&local_args_info);
612	+
613		optarg = 0;
614	<	optind = 1;
615	<	opterr = 1;
614	>	optind = 0;
615	>	opterr = params->print_errors;
616		optopt = '?';
617
618		while (1)
619		{
620		int option_index = 0;
100	–	char *stop_char;
621
622		static struct option long_options[] = {
623		{ "help",       0, NULL, 'h' },
#	Line 106 | Line 626 | cmdline_parser (int argc, char * const *argv, struct g
626		{ "output",     1, NULL, 'o' },
627		{ "sele1",      1, NULL, 0 },
628		{ "sele2",      1, NULL, 0 },
629	+	{ "order",      1, NULL, 0 },
630	+	{ "memory",     1, NULL, 'm' },
631	+	{ "selecorr",   0, NULL, 's' },
632		{ "rcorr",      0, NULL, 'r' },
633		{ "vcorr",      0, NULL, 'v' },
634		{ "dcorr",      0, NULL, 'd' },
635	<	{ NULL, 0, NULL, 0 }
635	>	{ "lcorr",      0, NULL, 'l' },
636	>	{ "sdcorr",     0, NULL, 'M' },
637	>	{ "r_rcorr",    0, NULL, 0 },
638	>	{ "thetacorr",  0, NULL, 0 },
639	>	{ "drcorr",     0, NULL, 0 },
640	>	{ "helfandEcorr",       0, NULL, 0 },
641	>	{ "momentum",   0, NULL, 'p' },
642	>	{ "stresscorr", 0, NULL, 0 },
643	>	{ 0,  0, 0, 0 }
644		};
645
646	<	stop_char = 0;
116	<	c = getopt_long (argc, argv, "hVi:o:rvd", long_options, &option_index);
646	>	c = getopt_long (argc, argv, "hVi:o:m:srvdlMp", long_options, &option_index);
647
648		if (c == -1) break;       /* Exit from `while (1)' loop.  */
649
650		switch (c)
651		{
652		case 'h':       /* Print help and exit.  */
123	–	clear_args ();
653		cmdline_parser_print_help ();
654	+	cmdline_parser_free (&local_args_info);
655		exit (EXIT_SUCCESS);
656
657		case 'V':       /* Print version and exit.  */
128	–	clear_args ();
658		cmdline_parser_print_version ();
659	+	cmdline_parser_free (&local_args_info);
660		exit (EXIT_SUCCESS);
661
662		case 'i':       /* input dump file.  */
663	<	if (args_info->input_given)
664	<	{
665	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
666	<	clear_args ();
667	<	exit (EXIT_FAILURE);
668	<	}
669	<	args_info->input_given = 1;
670	<	args_info->input_arg = gengetopt_strdup (optarg);
663	>
664	>
665	>	if (update_arg( (void *)&(args_info->input_arg),
666	>	&(args_info->input_orig), &(args_info->input_given),
667	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
668	>	check_ambiguity, override, 0, 0,
669	>	"input", 'i',
670	>	additional_error))
671	>	goto failure;
672	>
673		break;
142	–
674		case 'o':       /* output file name.  */
675	<	if (args_info->output_given)
676	<	{
677	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
678	<	clear_args ();
679	<	exit (EXIT_FAILURE);
680	<	}
681	<	args_info->output_given = 1;
682	<	args_info->output_arg = gengetopt_strdup (optarg);
675	>
676	>
677	>	if (update_arg( (void *)&(args_info->output_arg),
678	>	&(args_info->output_orig), &(args_info->output_given),
679	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
680	>	check_ambiguity, override, 0, 0,
681	>	"output", 'o',
682	>	additional_error))
683	>	goto failure;
684	>
685		break;
686	<
686	>	case 'm':       /* Available memory (defaults to 2G).  */
687	>
688	>
689	>	if (update_arg( (void *)&(args_info->memory_arg),
690	>	&(args_info->memory_orig), &(args_info->memory_given),
691	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
692	>	check_ambiguity, override, 0, 0,
693	>	"memory", 'm',
694	>	additional_error))
695	>	goto failure;
696	>
697	>	break;
698	>	case 's':       /* selection correlation function.  */
699	>
700	>	if (args_info->dynamicProps_group_counter && override)
701	>	reset_group_dynamicProps (args_info);
702	>	args_info->dynamicProps_group_counter += 1;
703	>
704	>	if (update_arg( 0 ,
705	>	0 , &(args_info->selecorr_given),
706	>	&(local_args_info.selecorr_given), optarg, 0, 0, ARG_NO,
707	>	check_ambiguity, override, 0, 0,
708	>	"selecorr", 's',
709	>	additional_error))
710	>	goto failure;
711	>
712	>	break;
713		case 'r':       /* rmsd.  */
714	<	if (args_info->rcorr_given)
715	<	{
716	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
717	<	clear_args ();
718	<	exit (EXIT_FAILURE);
719	<	}
720	<	args_info->rcorr_given = 1;
721	<	dynamicProps_group_counter += 1;
722	<	break;
723	<
714	>
715	>	if (args_info->dynamicProps_group_counter && override)
716	>	reset_group_dynamicProps (args_info);
717	>	args_info->dynamicProps_group_counter += 1;
718	>
719	>	if (update_arg( 0 ,
720	>	0 , &(args_info->rcorr_given),
721	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
722	>	check_ambiguity, override, 0, 0,
723	>	"rcorr", 'r',
724	>	additional_error))
725	>	goto failure;
726	>
727	>	break;
728		case 'v':       /* velocity correlation function.  */
729	<	if (args_info->vcorr_given)
730	<	{
731	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
732	<	clear_args ();
733	<	exit (EXIT_FAILURE);
734	<	}
735	<	args_info->vcorr_given = 1;
736	<	dynamicProps_group_counter += 1;
737	<	break;
738	<
729	>
730	>	if (args_info->dynamicProps_group_counter && override)
731	>	reset_group_dynamicProps (args_info);
732	>	args_info->dynamicProps_group_counter += 1;
733	>
734	>	if (update_arg( 0 ,
735	>	0 , &(args_info->vcorr_given),
736	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
737	>	check_ambiguity, override, 0, 0,
738	>	"vcorr", 'v',
739	>	additional_error))
740	>	goto failure;
741	>
742	>	break;
743		case 'd':       /* dipole correlation function.  */
744	<	if (args_info->dcorr_given)
745	<	{
746	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
747	<	clear_args ();
748	<	exit (EXIT_FAILURE);
749	<	}
750	<	args_info->dcorr_given = 1;
751	<	dynamicProps_group_counter += 1;
752	<	break;
753	<
744	>
745	>	if (args_info->dynamicProps_group_counter && override)
746	>	reset_group_dynamicProps (args_info);
747	>	args_info->dynamicProps_group_counter += 1;
748	>
749	>	if (update_arg( 0 ,
750	>	0 , &(args_info->dcorr_given),
751	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
752	>	check_ambiguity, override, 0, 0,
753	>	"dcorr", 'd',
754	>	additional_error))
755	>	goto failure;
756	>
757	>	break;
758	>	case 'l':       /* Lengendre correlation function.  */
759	>
760	>	if (args_info->dynamicProps_group_counter && override)
761	>	reset_group_dynamicProps (args_info);
762	>	args_info->dynamicProps_group_counter += 1;
763	>
764	>	if (update_arg( 0 ,
765	>	0 , &(args_info->lcorr_given),
766	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
767	>	check_ambiguity, override, 0, 0,
768	>	"lcorr", 'l',
769	>	additional_error))
770	>	goto failure;
771	>
772	>	break;
773	>	case 'M':       /* System dipole correlation function.  */
774	>
775	>	if (args_info->dynamicProps_group_counter && override)
776	>	reset_group_dynamicProps (args_info);
777	>	args_info->dynamicProps_group_counter += 1;
778	>
779	>	if (update_arg( 0 ,
780	>	0 , &(args_info->sdcorr_given),
781	>	&(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
782	>	check_ambiguity, override, 0, 0,
783	>	"sdcorr", 'M',
784	>	additional_error))
785	>	goto failure;
786	>
787	>	break;
788	>	case 'p':       /* Helfand momentum for viscosity.  */
789	>
790	>	if (args_info->dynamicProps_group_counter && override)
791	>	reset_group_dynamicProps (args_info);
792	>	args_info->dynamicProps_group_counter += 1;
793	>
794	>	if (update_arg( 0 ,
795	>	0 , &(args_info->momentum_given),
796	>	&(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
797	>	check_ambiguity, override, 0, 0,
798	>	"momentum", 'p',
799	>	additional_error))
800	>	goto failure;
801	>
802	>	break;
803
804		case 0: /* Long option with no short option */
805		/* select first stuntdouble set.  */
806		if (strcmp (long_options[option_index].name, "sele1") == 0)
807	<	{
192	<	if (args_info->sele1_given)
193	<	{
194	<	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
195	<	clear_args ();
196	<	exit (EXIT_FAILURE);
197	<	}
198	<	args_info->sele1_given = 1;
199	<	args_info->sele1_arg = gengetopt_strdup (optarg);
200	<	break;
201	<	}
807	>	{
808
809	+
810	+	if (update_arg( (void *)&(args_info->sele1_arg),
811	+	&(args_info->sele1_orig), &(args_info->sele1_given),
812	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
813	+	check_ambiguity, override, 0, 0,
814	+	"sele1", '-',
815	+	additional_error))
816	+	goto failure;
817	+
818	+	}
819		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
820		else if (strcmp (long_options[option_index].name, "sele2") == 0)
821	<	{
206	<	if (args_info->sele2_given)
207	<	{
208	<	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
209	<	clear_args ();
210	<	exit (EXIT_FAILURE);
211	<	}
212	<	args_info->sele2_given = 1;
213	<	args_info->sele2_arg = gengetopt_strdup (optarg);
214	<	break;
215	<	}
821	>	{
822
823	<
823	>
824	>	if (update_arg( (void *)&(args_info->sele2_arg),
825	>	&(args_info->sele2_orig), &(args_info->sele2_given),
826	>	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
827	>	check_ambiguity, override, 0, 0,
828	>	"sele2", '-',
829	>	additional_error))
830	>	goto failure;
831	>
832	>	}
833	>	/* Lengendre Polynomial Order.  */
834	>	else if (strcmp (long_options[option_index].name, "order") == 0)
835	>	{
836	>
837	>
838	>	if (update_arg( (void *)&(args_info->order_arg),
839	>	&(args_info->order_orig), &(args_info->order_given),
840	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
841	>	check_ambiguity, override, 0, 0,
842	>	"order", '-',
843	>	additional_error))
844	>	goto failure;
845	>
846	>	}
847	>	/* Radial rmsd.  */
848	>	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
849	>	{
850	>
851	>	if (args_info->dynamicProps_group_counter && override)
852	>	reset_group_dynamicProps (args_info);
853	>	args_info->dynamicProps_group_counter += 1;
854	>
855	>	if (update_arg( 0 ,
856	>	0 , &(args_info->r_rcorr_given),
857	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
858	>	check_ambiguity, override, 0, 0,
859	>	"r_rcorr", '-',
860	>	additional_error))
861	>	goto failure;
862	>
863	>	}
864	>	/* Angular rmsd.  */
865	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
866	>	{
867	>
868	>	if (args_info->dynamicProps_group_counter && override)
869	>	reset_group_dynamicProps (args_info);
870	>	args_info->dynamicProps_group_counter += 1;
871	>
872	>	if (update_arg( 0 ,
873	>	0 , &(args_info->thetacorr_given),
874	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
875	>	check_ambiguity, override, 0, 0,
876	>	"thetacorr", '-',
877	>	additional_error))
878	>	goto failure;
879	>
880	>	}
881	>	/* Directional rmsd for particles with unit vectors.  */
882	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
883	>	{
884	>
885	>	if (args_info->dynamicProps_group_counter && override)
886	>	reset_group_dynamicProps (args_info);
887	>	args_info->dynamicProps_group_counter += 1;
888	>
889	>	if (update_arg( 0 ,
890	>	0 , &(args_info->drcorr_given),
891	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
892	>	check_ambiguity, override, 0, 0,
893	>	"drcorr", '-',
894	>	additional_error))
895	>	goto failure;
896	>
897	>	}
898	>	/* Helfand moment for thermal conductvity.  */
899	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
900	>	{
901	>
902	>	if (args_info->dynamicProps_group_counter && override)
903	>	reset_group_dynamicProps (args_info);
904	>	args_info->dynamicProps_group_counter += 1;
905	>
906	>	if (update_arg( 0 ,
907	>	0 , &(args_info->helfandEcorr_given),
908	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
909	>	check_ambiguity, override, 0, 0,
910	>	"helfandEcorr", '-',
911	>	additional_error))
912	>	goto failure;
913	>
914	>	}
915	>	/* Stress tensor correlation function.  */
916	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
917	>	{
918	>
919	>	if (args_info->dynamicProps_group_counter && override)
920	>	reset_group_dynamicProps (args_info);
921	>	args_info->dynamicProps_group_counter += 1;
922	>
923	>	if (update_arg( 0 ,
924	>	0 , &(args_info->stresscorr_given),
925	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
926	>	check_ambiguity, override, 0, 0,
927	>	"stresscorr", '-',
928	>	additional_error))
929	>	goto failure;
930	>
931	>	}
932	>
933	>	break;
934		case '?':       /* Invalid option.  */
935		/* `getopt_long' already printed an error message.  */
936	<	exit (EXIT_FAILURE);
936	>	goto failure;
937
938		default:        /* bug: option not considered.  */
939	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
939	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
940		abort ();
941		} /* switch */
942		} /* while */
943
944	<	if ( dynamicProps_group_counter != 1)
944	>	if (args_info->dynamicProps_group_counter > 1)
945		{
946	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
947	<	missing_required_options = 1;
946	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
947	>	error = 1;
948		}
949
950
951	<	if (! args_info->input_given)
951	>
952	>	if (check_required)
953		{
954	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
238	<	missing_required_options = 1;
954	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
955		}
240	–	if ( missing_required_options )
241	–	exit (EXIT_FAILURE);
956
957	+	cmdline_parser_release (&local_args_info);
958	+
959	+	if ( error )
960	+	return (EXIT_FAILURE);
961	+
962	+	if (optind < argc)
963	+	{
964	+	int i = 0 ;
965	+	int found_prog_name = 0;
966	+	/* whether program name, i.e., argv[0], is in the remaining args
967	+	(this may happen with some implementations of getopt,
968	+	but surely not with the one included by gengetopt) */
969	+
970	+	i = optind;
971	+	while (i < argc)
972	+	if (argv[i++] == argv[0]) {
973	+	found_prog_name = 1;
974	+	break;
975	+	}
976	+	i = 0;
977	+
978	+	args_info->inputs_num = argc - optind - found_prog_name;
979	+	args_info->inputs =
980	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
981	+	while (optind < argc)
982	+	if (argv[optind++] != argv[0])
983	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
984	+	}
985	+
986		return 0;
987	+
988	+	failure:
989	+
990	+	cmdline_parser_release (&local_args_info);
991	+	return (EXIT_FAILURE);
992		}

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords), Revision 507 by gezelter, Fri Apr 15 22:04:00 2005 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (property svn:keywords), Revision 1811 by gezelter, Fri Nov 16 15:12:21 2012 UTC

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