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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.c

Comparing trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents):
Revision 917 by tim, Fri Mar 24 17:29:07 2006 UTC vs.
Revision 1604 by jmichalk, Mon Aug 8 18:53:40 2011 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F DynamicPropsCmd
4	>	/usr/local/bin/gengetopt -F DynamicPropsCmd -i DynamicProps.ggo
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#include <getopt.h>
25
26		#include "DynamicPropsCmd.h"
27
28	+	const char *gengetopt_args_info_purpose = "";
29	+
30	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]...";
31	+
32	+	const char *gengetopt_args_info_description = "";
33	+
34	+	const char *gengetopt_args_info_help[] = {
35	+	"  -h, --help                    Print help and exit",
36	+	"  -V, --version                 Print version and exit",
37	+	"  -i, --input=filename          input dump file",
38	+	"  -o, --output=filename         output file name",
39	+	"      --sele1=selection script  select first stuntdouble set",
40	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41	+	"      --order=INT               Lengendre Polynomial Order",
42	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
43	+	"\n Group: dynamicProps\n   an option of this group is required",
44	+	"  -r, --rcorr                   rmsd",
45	+	"  -v, --vcorr                   velocity correlation function",
46	+	"  -d, --dcorr                   dipole correlation function",
47	+	"  -l, --lcorr                   Lengendre correlation function",
48	+	"  -s, --sdcorr                  System dipole correlation function",
49	+	"      --r_rcorr                 Radial rmsd",
50	+	"      --thetacorr               Angular rmsd",
51	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
52	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
53	+	"      --stresscorr              Stress tensor correlation function",
54	+	0
55	+	};
56	+
57	+	typedef enum {ARG_NO
58	+	, ARG_STRING
59	+	, ARG_INT
60	+	} cmdline_parser_arg_type;
61	+
62	+	static
63	+	void clear_given (struct gengetopt_args_info *args_info);
64	+	static
65	+	void clear_args (struct gengetopt_args_info *args_info);
66	+
67	+	static int
68	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
69	+	struct cmdline_parser_params *params, const char *additional_error);
70	+
71	+	static int
72	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
73	+
74	+	static char *
75	+	gengetopt_strdup (const char *s);
76	+
77	+	static
78	+	void clear_given (struct gengetopt_args_info *args_info)
79	+	{
80	+	args_info->help_given = 0 ;
81	+	args_info->version_given = 0 ;
82	+	args_info->input_given = 0 ;
83	+	args_info->output_given = 0 ;
84	+	args_info->sele1_given = 0 ;
85	+	args_info->sele2_given = 0 ;
86	+	args_info->order_given = 0 ;
87	+	args_info->memory_given = 0 ;
88	+	args_info->rcorr_given = 0 ;
89	+	args_info->vcorr_given = 0 ;
90	+	args_info->dcorr_given = 0 ;
91	+	args_info->lcorr_given = 0 ;
92	+	args_info->sdcorr_given = 0 ;
93	+	args_info->r_rcorr_given = 0 ;
94	+	args_info->thetacorr_given = 0 ;
95	+	args_info->drcorr_given = 0 ;
96	+	args_info->helfandEcorr_given = 0 ;
97	+	args_info->stresscorr_given = 0 ;
98	+	args_info->dynamicProps_group_counter = 0 ;
99	+	}
100	+
101	+	static
102	+	void clear_args (struct gengetopt_args_info *args_info)
103	+	{
104	+	FIX_UNUSED (args_info);
105	+	args_info->input_arg = NULL;
106	+	args_info->input_orig = NULL;
107	+	args_info->output_arg = NULL;
108	+	args_info->output_orig = NULL;
109	+	args_info->sele1_arg = NULL;
110	+	args_info->sele1_orig = NULL;
111	+	args_info->sele2_arg = NULL;
112	+	args_info->sele2_orig = NULL;
113	+	args_info->order_orig = NULL;
114	+	args_info->memory_arg = gengetopt_strdup ("2G");
115	+	args_info->memory_orig = NULL;
116	+
117	+	}
118	+
119	+	static
120	+	void init_args_info(struct gengetopt_args_info *args_info)
121	+	{
122	+
123	+
124	+	args_info->help_help = gengetopt_args_info_help[0] ;
125	+	args_info->version_help = gengetopt_args_info_help[1] ;
126	+	args_info->input_help = gengetopt_args_info_help[2] ;
127	+	args_info->output_help = gengetopt_args_info_help[3] ;
128	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
129	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
130	+	args_info->order_help = gengetopt_args_info_help[6] ;
131	+	args_info->memory_help = gengetopt_args_info_help[7] ;
132	+	args_info->rcorr_help = gengetopt_args_info_help[9] ;
133	+	args_info->vcorr_help = gengetopt_args_info_help[10] ;
134	+	args_info->dcorr_help = gengetopt_args_info_help[11] ;
135	+	args_info->lcorr_help = gengetopt_args_info_help[12] ;
136	+	args_info->sdcorr_help = gengetopt_args_info_help[13] ;
137	+	args_info->r_rcorr_help = gengetopt_args_info_help[14] ;
138	+	args_info->thetacorr_help = gengetopt_args_info_help[15] ;
139	+	args_info->drcorr_help = gengetopt_args_info_help[16] ;
140	+	args_info->helfandEcorr_help = gengetopt_args_info_help[17] ;
141	+	args_info->stresscorr_help = gengetopt_args_info_help[18] ;
142	+
143	+	}
144	+
145		void
146		cmdline_parser_print_version (void)
147		{
148	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
148	>	printf ("%s %s\n",
149	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
150	>	CMDLINE_PARSER_VERSION);
151		}
152
153	+	static void print_help_common(void) {
154	+	cmdline_parser_print_version ();
155	+
156	+	if (strlen(gengetopt_args_info_purpose) > 0)
157	+	printf("\n%s\n", gengetopt_args_info_purpose);
158	+
159	+	if (strlen(gengetopt_args_info_usage) > 0)
160	+	printf("\n%s\n", gengetopt_args_info_usage);
161	+
162	+	printf("\n");
163	+
164	+	if (strlen(gengetopt_args_info_description) > 0)
165	+	printf("%s\n\n", gengetopt_args_info_description);
166	+	}
167	+
168		void
169		cmdline_parser_print_help (void)
170		{
171	<	cmdline_parser_print_version ();
172	<	printf("\n"
173	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
174	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("      --order=INT               Lengendre Polynomial Order\n");
45	<	printf("\n");
46	<	printf(" Group: dynamicProps  an option of this group is required\n");
47	<	printf("  -r, --rcorr                   rmsd\n");
48	<	printf("  -v, --vcorr                   velocity correlation function\n");
49	<	printf("  -d, --dcorr                   dipole correlation function\n");
50	<	printf("  -l, --lcorr                   Lengendre correlation function\n");
171	>	int i = 0;
172	>	print_help_common();
173	>	while (gengetopt_args_info_help[i])
174	>	printf("%s\n", gengetopt_args_info_help[i++]);
175		}
176
177	+	void
178	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
179	+	{
180	+	clear_given (args_info);
181	+	clear_args (args_info);
182	+	init_args_info (args_info);
183	+	}
184
185	<	static char *gengetopt_strdup (const char *s);
185	>	void
186	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
187	>	{
188	>	if (params)
189	>	{
190	>	params->override = 0;
191	>	params->initialize = 1;
192	>	params->check_required = 1;
193	>	params->check_ambiguity = 0;
194	>	params->print_errors = 1;
195	>	}
196	>	}
197
198	<	/* gengetopt_strdup() */
199	<	/* strdup.c replacement of strdup, which is not standard */
198	>	struct cmdline_parser_params *
199	>	cmdline_parser_params_create(void)
200	>	{
201	>	struct cmdline_parser_params *params =
202	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
203	>	cmdline_parser_params_init(params);
204	>	return params;
205	>	}
206	>
207	>	static void
208	>	free_string_field (char **s)
209	>	{
210	>	if (*s)
211	>	{
212	>	free (*s);
213	>	*s = 0;
214	>	}
215	>	}
216	>
217	>
218	>	static void
219	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
220	>	{
221	>
222	>	free_string_field (&(args_info->input_arg));
223	>	free_string_field (&(args_info->input_orig));
224	>	free_string_field (&(args_info->output_arg));
225	>	free_string_field (&(args_info->output_orig));
226	>	free_string_field (&(args_info->sele1_arg));
227	>	free_string_field (&(args_info->sele1_orig));
228	>	free_string_field (&(args_info->sele2_arg));
229	>	free_string_field (&(args_info->sele2_orig));
230	>	free_string_field (&(args_info->order_orig));
231	>	free_string_field (&(args_info->memory_arg));
232	>	free_string_field (&(args_info->memory_orig));
233	>
234	>
235	>
236	>	clear_given (args_info);
237	>	}
238	>
239	>
240	>	static void
241	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
242	>	{
243	>	FIX_UNUSED (values);
244	>	if (arg) {
245	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
246	>	} else {
247	>	fprintf(outfile, "%s\n", opt);
248	>	}
249	>	}
250	>
251	>
252	>	int
253	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
254	>	{
255	>	int i = 0;
256	>
257	>	if (!outfile)
258	>	{
259	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
260	>	return EXIT_FAILURE;
261	>	}
262	>
263	>	if (args_info->help_given)
264	>	write_into_file(outfile, "help", 0, 0 );
265	>	if (args_info->version_given)
266	>	write_into_file(outfile, "version", 0, 0 );
267	>	if (args_info->input_given)
268	>	write_into_file(outfile, "input", args_info->input_orig, 0);
269	>	if (args_info->output_given)
270	>	write_into_file(outfile, "output", args_info->output_orig, 0);
271	>	if (args_info->sele1_given)
272	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
273	>	if (args_info->sele2_given)
274	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
275	>	if (args_info->order_given)
276	>	write_into_file(outfile, "order", args_info->order_orig, 0);
277	>	if (args_info->memory_given)
278	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
279	>	if (args_info->rcorr_given)
280	>	write_into_file(outfile, "rcorr", 0, 0 );
281	>	if (args_info->vcorr_given)
282	>	write_into_file(outfile, "vcorr", 0, 0 );
283	>	if (args_info->dcorr_given)
284	>	write_into_file(outfile, "dcorr", 0, 0 );
285	>	if (args_info->lcorr_given)
286	>	write_into_file(outfile, "lcorr", 0, 0 );
287	>	if (args_info->sdcorr_given)
288	>	write_into_file(outfile, "sdcorr", 0, 0 );
289	>	if (args_info->r_rcorr_given)
290	>	write_into_file(outfile, "r_rcorr", 0, 0 );
291	>	if (args_info->thetacorr_given)
292	>	write_into_file(outfile, "thetacorr", 0, 0 );
293	>	if (args_info->drcorr_given)
294	>	write_into_file(outfile, "drcorr", 0, 0 );
295	>	if (args_info->helfandEcorr_given)
296	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
297	>	if (args_info->stresscorr_given)
298	>	write_into_file(outfile, "stresscorr", 0, 0 );
299	>
300	>
301	>	i = EXIT_SUCCESS;
302	>	return i;
303	>	}
304	>
305	>	int
306	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
307	>	{
308	>	FILE *outfile;
309	>	int i = 0;
310	>
311	>	outfile = fopen(filename, "w");
312	>
313	>	if (!outfile)
314	>	{
315	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
316	>	return EXIT_FAILURE;
317	>	}
318	>
319	>	i = cmdline_parser_dump(outfile, args_info);
320	>	fclose (outfile);
321	>
322	>	return i;
323	>	}
324	>
325	>	void
326	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
327	>	{
328	>	cmdline_parser_release (args_info);
329	>	}
330	>
331	>	/** @brief replacement of strdup, which is not standard */
332		char *
333		gengetopt_strdup (const char *s)
334		{
335	<	char *result = (char*)malloc(strlen(s) + 1);
335	>	char *result = 0;
336	>	if (!s)
337	>	return result;
338	>
339	>	result = (char*)malloc(strlen(s) + 1);
340		if (result == (char*)0)
341		return (char*)0;
342		strcpy(result, s);
343		return result;
344		}
345
346	<	int
347	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
346	>	static void
347	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
348		{
349	<	int c;        /* Character of the parsed option.  */
350	<	int missing_required_options = 0;
73	<	int dynamicProps_group_counter = 0;
349	>	if (! args_info->dynamicProps_group_counter)
350	>	return;
351
75	–
76	–	args_info->help_given = 0 ;
77	–	args_info->version_given = 0 ;
78	–	args_info->input_given = 0 ;
79	–	args_info->output_given = 0 ;
80	–	args_info->sele1_given = 0 ;
81	–	args_info->sele2_given = 0 ;
82	–	args_info->order_given = 0 ;
352		args_info->rcorr_given = 0 ;
353		args_info->vcorr_given = 0 ;
354		args_info->dcorr_given = 0 ;
355		args_info->lcorr_given = 0 ;
356	<	#define clear_args() { \
357	<	args_info->input_arg = NULL; \
358	<	args_info->output_arg = NULL; \
359	<	args_info->sele1_arg = NULL; \
360	<	args_info->sele2_arg = NULL; \
356	>	args_info->sdcorr_given = 0 ;
357	>	args_info->r_rcorr_given = 0 ;
358	>	args_info->thetacorr_given = 0 ;
359	>	args_info->drcorr_given = 0 ;
360	>	args_info->helfandEcorr_given = 0 ;
361	>	args_info->stresscorr_given = 0 ;
362	>
363	>	args_info->dynamicProps_group_counter = 0;
364		}
365
366	<	clear_args();
366	>	int
367	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
368	>	{
369	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
370	>	}
371
372	+	int
373	+	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
374	+	struct cmdline_parser_params *params)
375	+	{
376	+	int result;
377	+	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
378	+
379	+	if (result == EXIT_FAILURE)
380	+	{
381	+	cmdline_parser_free (args_info);
382	+	exit (EXIT_FAILURE);
383	+	}
384	+
385	+	return result;
386	+	}
387	+
388	+	int
389	+	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
390	+	{
391	+	int result;
392	+	struct cmdline_parser_params params;
393	+
394	+	params.override = override;
395	+	params.initialize = initialize;
396	+	params.check_required = check_required;
397	+	params.check_ambiguity = 0;
398	+	params.print_errors = 1;
399	+
400	+	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
401	+
402	+	if (result == EXIT_FAILURE)
403	+	{
404	+	cmdline_parser_free (args_info);
405	+	exit (EXIT_FAILURE);
406	+	}
407	+
408	+	return result;
409	+	}
410	+
411	+	int
412	+	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
413	+	{
414	+	int result = EXIT_SUCCESS;
415	+
416	+	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
417	+	result = EXIT_FAILURE;
418	+
419	+	if (result == EXIT_FAILURE)
420	+	{
421	+	cmdline_parser_free (args_info);
422	+	exit (EXIT_FAILURE);
423	+	}
424	+
425	+	return result;
426	+	}
427	+
428	+	int
429	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
430	+	{
431	+	int error = 0;
432	+	FIX_UNUSED (additional_error);
433	+
434	+	/* checks for required options */
435	+	if (! args_info->input_given)
436	+	{
437	+	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
438	+	error = 1;
439	+	}
440	+
441	+	if (args_info->dynamicProps_group_counter == 0)
442	+	{
443	+	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
444	+	error = 1;
445	+	}
446	+
447	+
448	+	/* checks for dependences among options */
449	+
450	+	return error;
451	+	}
452	+
453	+
454	+	static char *package_name = 0;
455	+
456	+	/**
457	+	* @brief updates an option
458	+	* @param field the generic pointer to the field to update
459	+	* @param orig_field the pointer to the orig field
460	+	* @param field_given the pointer to the number of occurrence of this option
461	+	* @param prev_given the pointer to the number of occurrence already seen
462	+	* @param value the argument for this option (if null no arg was specified)
463	+	* @param possible_values the possible values for this option (if specified)
464	+	* @param default_value the default value (in case the option only accepts fixed values)
465	+	* @param arg_type the type of this option
466	+	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
467	+	* @param override @see cmdline_parser_params.override
468	+	* @param no_free whether to free a possible previous value
469	+	* @param multiple_option whether this is a multiple option
470	+	* @param long_opt the corresponding long option
471	+	* @param short_opt the corresponding short option (or '-' if none)
472	+	* @param additional_error possible further error specification
473	+	*/
474	+	static
475	+	int update_arg(void *field, char **orig_field,
476	+	unsigned int *field_given, unsigned int *prev_given,
477	+	char *value, const char *possible_values[],
478	+	const char *default_value,
479	+	cmdline_parser_arg_type arg_type,
480	+	int check_ambiguity, int override,
481	+	int no_free, int multiple_option,
482	+	const char *long_opt, char short_opt,
483	+	const char *additional_error)
484	+	{
485	+	char *stop_char = 0;
486	+	const char *val = value;
487	+	int found;
488	+	char **string_field;
489	+	FIX_UNUSED (field);
490	+
491	+	stop_char = 0;
492	+	found = 0;
493	+
494	+	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
495	+	{
496	+	if (short_opt != '-')
497	+	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
498	+	package_name, long_opt, short_opt,
499	+	(additional_error ? additional_error : ""));
500	+	else
501	+	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
502	+	package_name, long_opt,
503	+	(additional_error ? additional_error : ""));
504	+	return 1; /* failure */
505	+	}
506	+
507	+	FIX_UNUSED (default_value);
508	+
509	+	if (field_given && *field_given && ! override)
510	+	return 0;
511	+	if (prev_given)
512	+	(*prev_given)++;
513	+	if (field_given)
514	+	(*field_given)++;
515	+	if (possible_values)
516	+	val = possible_values[found];
517	+
518	+	switch(arg_type) {
519	+	case ARG_INT:
520	+	if (val) *((int *)field) = strtol (val, &stop_char, 0);
521	+	break;
522	+	case ARG_STRING:
523	+	if (val) {
524	+	string_field = (char **)field;
525	+	if (!no_free && *string_field)
526	+	free (*string_field); /* free previous string */
527	+	*string_field = gengetopt_strdup (val);
528	+	}
529	+	break;
530	+	default:
531	+	break;
532	+	};
533	+
534	+	/* check numeric conversion */
535	+	switch(arg_type) {
536	+	case ARG_INT:
537	+	if (val && !(stop_char && *stop_char == '\0')) {
538	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
539	+	return 1; /* failure */
540	+	}
541	+	break;
542	+	default:
543	+	;
544	+	};
545	+
546	+	/* store the original value */
547	+	switch(arg_type) {
548	+	case ARG_NO:
549	+	break;
550	+	default:
551	+	if (value && orig_field) {
552	+	if (no_free) {
553	+	*orig_field = value;
554	+	} else {
555	+	if (*orig_field)
556	+	free (*orig_field); /* free previous string */
557	+	*orig_field = gengetopt_strdup (value);
558	+	}
559	+	}
560	+	};
561	+
562	+	return 0; /* OK */
563	+	}
564	+
565	+
566	+	int
567	+	cmdline_parser_internal (
568	+	int argc, char **argv, struct gengetopt_args_info *args_info,
569	+	struct cmdline_parser_params *params, const char *additional_error)
570	+	{
571	+	int c;        /* Character of the parsed option.  */
572	+
573	+	int error = 0;
574	+	struct gengetopt_args_info local_args_info;
575	+
576	+	int override;
577	+	int initialize;
578	+	int check_required;
579	+	int check_ambiguity;
580	+
581	+	package_name = argv[0];
582	+
583	+	override = params->override;
584	+	initialize = params->initialize;
585	+	check_required = params->check_required;
586	+	check_ambiguity = params->check_ambiguity;
587	+
588	+	if (initialize)
589	+	cmdline_parser_init (args_info);
590	+
591	+	cmdline_parser_init (&local_args_info);
592	+
593		optarg = 0;
594	<	optind = 1;
595	<	opterr = 1;
594	>	optind = 0;
595	>	opterr = params->print_errors;
596		optopt = '?';
597
598		while (1)
599		{
600		int option_index = 0;
104	–	char *stop_char;
601
602		static struct option long_options[] = {
603		{ "help",       0, NULL, 'h' },
#	Line 111 | Line 607 | cmdline_parser (int argc, char * const *argv, struct g
607		{ "sele1",      1, NULL, 0 },
608		{ "sele2",      1, NULL, 0 },
609		{ "order",      1, NULL, 0 },
610	+	{ "memory",     1, NULL, 'm' },
611		{ "rcorr",      0, NULL, 'r' },
612		{ "vcorr",      0, NULL, 'v' },
613		{ "dcorr",      0, NULL, 'd' },
614		{ "lcorr",      0, NULL, 'l' },
615	<	{ NULL, 0, NULL, 0 }
615	>	{ "sdcorr",     0, NULL, 's' },
616	>	{ "r_rcorr",    0, NULL, 0 },
617	>	{ "thetacorr",  0, NULL, 0 },
618	>	{ "drcorr",     0, NULL, 0 },
619	>	{ "helfandEcorr",       0, NULL, 0 },
620	>	{ "stresscorr", 0, NULL, 0 },
621	>	{ 0,  0, 0, 0 }
622		};
623
624	<	stop_char = 0;
122	<	c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index);
624	>	c = getopt_long (argc, argv, "hVi:o:m:rvdls", long_options, &option_index);
625
626		if (c == -1) break;       /* Exit from `while (1)' loop.  */
627
628		switch (c)
629		{
630		case 'h':       /* Print help and exit.  */
129	–	clear_args ();
631		cmdline_parser_print_help ();
632	+	cmdline_parser_free (&local_args_info);
633		exit (EXIT_SUCCESS);
634
635		case 'V':       /* Print version and exit.  */
134	–	clear_args ();
636		cmdline_parser_print_version ();
637	+	cmdline_parser_free (&local_args_info);
638		exit (EXIT_SUCCESS);
639
640		case 'i':       /* input dump file.  */
641	<	if (args_info->input_given)
642	<	{
643	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
644	<	clear_args ();
645	<	exit (EXIT_FAILURE);
646	<	}
647	<	args_info->input_given = 1;
648	<	args_info->input_arg = gengetopt_strdup (optarg);
641	>
642	>
643	>	if (update_arg( (void *)&(args_info->input_arg),
644	>	&(args_info->input_orig), &(args_info->input_given),
645	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
646	>	check_ambiguity, override, 0, 0,
647	>	"input", 'i',
648	>	additional_error))
649	>	goto failure;
650	>
651		break;
148	–
652		case 'o':       /* output file name.  */
653	<	if (args_info->output_given)
654	<	{
655	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
656	<	clear_args ();
657	<	exit (EXIT_FAILURE);
658	<	}
659	<	args_info->output_given = 1;
660	<	args_info->output_arg = gengetopt_strdup (optarg);
653	>
654	>
655	>	if (update_arg( (void *)&(args_info->output_arg),
656	>	&(args_info->output_orig), &(args_info->output_given),
657	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
658	>	check_ambiguity, override, 0, 0,
659	>	"output", 'o',
660	>	additional_error))
661	>	goto failure;
662	>
663		break;
664	<
664	>	case 'm':       /* Available memory (defaults to 2G).  */
665	>
666	>
667	>	if (update_arg( (void *)&(args_info->memory_arg),
668	>	&(args_info->memory_orig), &(args_info->memory_given),
669	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
670	>	check_ambiguity, override, 0, 0,
671	>	"memory", 'm',
672	>	additional_error))
673	>	goto failure;
674	>
675	>	break;
676		case 'r':       /* rmsd.  */
677	<	if (args_info->rcorr_given)
678	<	{
679	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
680	<	clear_args ();
681	<	exit (EXIT_FAILURE);
682	<	}
683	<	args_info->rcorr_given = 1;
684	<	dynamicProps_group_counter += 1;
685	<	break;
686	<
677	>
678	>	if (args_info->dynamicProps_group_counter && override)
679	>	reset_group_dynamicProps (args_info);
680	>	args_info->dynamicProps_group_counter += 1;
681	>
682	>	if (update_arg( 0 ,
683	>	0 , &(args_info->rcorr_given),
684	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
685	>	check_ambiguity, override, 0, 0,
686	>	"rcorr", 'r',
687	>	additional_error))
688	>	goto failure;
689	>
690	>	break;
691		case 'v':       /* velocity correlation function.  */
692	<	if (args_info->vcorr_given)
693	<	{
694	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
695	<	clear_args ();
696	<	exit (EXIT_FAILURE);
697	<	}
698	<	args_info->vcorr_given = 1;
699	<	dynamicProps_group_counter += 1;
700	<	break;
701	<
692	>
693	>	if (args_info->dynamicProps_group_counter && override)
694	>	reset_group_dynamicProps (args_info);
695	>	args_info->dynamicProps_group_counter += 1;
696	>
697	>	if (update_arg( 0 ,
698	>	0 , &(args_info->vcorr_given),
699	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
700	>	check_ambiguity, override, 0, 0,
701	>	"vcorr", 'v',
702	>	additional_error))
703	>	goto failure;
704	>
705	>	break;
706		case 'd':       /* dipole correlation function.  */
707	<	if (args_info->dcorr_given)
708	<	{
709	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
710	<	clear_args ();
711	<	exit (EXIT_FAILURE);
712	<	}
713	<	args_info->dcorr_given = 1;
714	<	dynamicProps_group_counter += 1;
715	<	break;
716	<
707	>
708	>	if (args_info->dynamicProps_group_counter && override)
709	>	reset_group_dynamicProps (args_info);
710	>	args_info->dynamicProps_group_counter += 1;
711	>
712	>	if (update_arg( 0 ,
713	>	0 , &(args_info->dcorr_given),
714	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
715	>	check_ambiguity, override, 0, 0,
716	>	"dcorr", 'd',
717	>	additional_error))
718	>	goto failure;
719	>
720	>	break;
721		case 'l':       /* Lengendre correlation function.  */
722	<	if (args_info->lcorr_given)
723	<	{
724	<	fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
725	<	clear_args ();
726	<	exit (EXIT_FAILURE);
727	<	}
728	<	args_info->lcorr_given = 1;
729	<	dynamicProps_group_counter += 1;
730	<	break;
722	>
723	>	if (args_info->dynamicProps_group_counter && override)
724	>	reset_group_dynamicProps (args_info);
725	>	args_info->dynamicProps_group_counter += 1;
726	>
727	>	if (update_arg( 0 ,
728	>	0 , &(args_info->lcorr_given),
729	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
730	>	check_ambiguity, override, 0, 0,
731	>	"lcorr", 'l',
732	>	additional_error))
733	>	goto failure;
734	>
735	>	break;
736	>	case 's':       /* System dipole correlation function.  */
737	>
738	>	if (args_info->dynamicProps_group_counter && override)
739	>	reset_group_dynamicProps (args_info);
740	>	args_info->dynamicProps_group_counter += 1;
741	>
742	>	if (update_arg( 0 ,
743	>	0 , &(args_info->sdcorr_given),
744	>	&(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
745	>	check_ambiguity, override, 0, 0,
746	>	"sdcorr", 's',
747	>	additional_error))
748	>	goto failure;
749	>
750	>	break;
751
204	–
752		case 0: /* Long option with no short option */
753		/* select first stuntdouble set.  */
754		if (strcmp (long_options[option_index].name, "sele1") == 0)
755		{
209	–	if (args_info->sele1_given)
210	–	{
211	–	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
212	–	clear_args ();
213	–	exit (EXIT_FAILURE);
214	–	}
215	–	args_info->sele1_given = 1;
216	–	args_info->sele1_arg = gengetopt_strdup (optarg);
217	–	break;
218	–	}
756
757	+
758	+	if (update_arg( (void *)&(args_info->sele1_arg),
759	+	&(args_info->sele1_orig), &(args_info->sele1_given),
760	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
761	+	check_ambiguity, override, 0, 0,
762	+	"sele1", '-',
763	+	additional_error))
764	+	goto failure;
765	+
766	+	}
767		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
768		else if (strcmp (long_options[option_index].name, "sele2") == 0)
769		{
223	–	if (args_info->sele2_given)
224	–	{
225	–	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
226	–	clear_args ();
227	–	exit (EXIT_FAILURE);
228	–	}
229	–	args_info->sele2_given = 1;
230	–	args_info->sele2_arg = gengetopt_strdup (optarg);
231	–	break;
232	–	}
770
771	+
772	+	if (update_arg( (void *)&(args_info->sele2_arg),
773	+	&(args_info->sele2_orig), &(args_info->sele2_given),
774	+	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
775	+	check_ambiguity, override, 0, 0,
776	+	"sele2", '-',
777	+	additional_error))
778	+	goto failure;
779	+
780	+	}
781		/* Lengendre Polynomial Order.  */
782		else if (strcmp (long_options[option_index].name, "order") == 0)
783		{
784	<	if (args_info->order_given)
785	<	{
786	<	fprintf (stderr, "%s: `--order' option given more than once\n", CMDLINE_PARSER_PACKAGE);
787	<	clear_args ();
788	<	exit (EXIT_FAILURE);
789	<	}
790	<	args_info->order_given = 1;
791	<	args_info->order_arg = strtol (optarg,&stop_char,0);
792	<	break;
784	>
785	>
786	>	if (update_arg( (void *)&(args_info->order_arg),
787	>	&(args_info->order_orig), &(args_info->order_given),
788	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
789	>	check_ambiguity, override, 0, 0,
790	>	"order", '-',
791	>	additional_error))
792	>	goto failure;
793	>
794		}
795	+	/* Radial rmsd.  */
796	+	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
797	+	{
798
799	<
799	>	if (args_info->dynamicProps_group_counter && override)
800	>	reset_group_dynamicProps (args_info);
801	>	args_info->dynamicProps_group_counter += 1;
802	>
803	>	if (update_arg( 0 ,
804	>	0 , &(args_info->r_rcorr_given),
805	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
806	>	check_ambiguity, override, 0, 0,
807	>	"r_rcorr", '-',
808	>	additional_error))
809	>	goto failure;
810	>
811	>	}
812	>	/* Angular rmsd.  */
813	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
814	>	{
815	>
816	>	if (args_info->dynamicProps_group_counter && override)
817	>	reset_group_dynamicProps (args_info);
818	>	args_info->dynamicProps_group_counter += 1;
819	>
820	>	if (update_arg( 0 ,
821	>	0 , &(args_info->thetacorr_given),
822	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
823	>	check_ambiguity, override, 0, 0,
824	>	"thetacorr", '-',
825	>	additional_error))
826	>	goto failure;
827	>
828	>	}
829	>	/* Directional rmsd for particles with unit vectors.  */
830	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
831	>	{
832	>
833	>	if (args_info->dynamicProps_group_counter && override)
834	>	reset_group_dynamicProps (args_info);
835	>	args_info->dynamicProps_group_counter += 1;
836	>
837	>	if (update_arg( 0 ,
838	>	0 , &(args_info->drcorr_given),
839	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
840	>	check_ambiguity, override, 0, 0,
841	>	"drcorr", '-',
842	>	additional_error))
843	>	goto failure;
844	>
845	>	}
846	>	/* Helfand moment for thermal conductvity.  */
847	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
848	>	{
849	>
850	>	if (args_info->dynamicProps_group_counter && override)
851	>	reset_group_dynamicProps (args_info);
852	>	args_info->dynamicProps_group_counter += 1;
853	>
854	>	if (update_arg( 0 ,
855	>	0 , &(args_info->helfandEcorr_given),
856	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
857	>	check_ambiguity, override, 0, 0,
858	>	"helfandEcorr", '-',
859	>	additional_error))
860	>	goto failure;
861	>
862	>	}
863	>	/* Stress tensor correlation function.  */
864	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
865	>	{
866	>
867	>	if (args_info->dynamicProps_group_counter && override)
868	>	reset_group_dynamicProps (args_info);
869	>	args_info->dynamicProps_group_counter += 1;
870	>
871	>	if (update_arg( 0 ,
872	>	0 , &(args_info->stresscorr_given),
873	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
874	>	check_ambiguity, override, 0, 0,
875	>	"stresscorr", '-',
876	>	additional_error))
877	>	goto failure;
878	>
879	>	}
880	>
881	>	break;
882		case '?':       /* Invalid option.  */
883		/* `getopt_long' already printed an error message.  */
884	<	exit (EXIT_FAILURE);
884	>	goto failure;
885
886		default:        /* bug: option not considered.  */
887	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
887	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
888		abort ();
889		} /* switch */
890		} /* while */
891
892	<	if ( dynamicProps_group_counter != 1)
892	>	if (args_info->dynamicProps_group_counter > 1)
893		{
894	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
895	<	missing_required_options = 1;
894	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
895	>	error = 1;
896		}
897
898
899	<	if (! args_info->input_given)
899	>
900	>	if (check_required)
901		{
902	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
269	<	missing_required_options = 1;
902	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
903		}
271	–	if ( missing_required_options )
272	–	exit (EXIT_FAILURE);
904
905	+	cmdline_parser_release (&local_args_info);
906	+
907	+	if ( error )
908	+	return (EXIT_FAILURE);
909	+
910		return 0;
911	+
912	+	failure:
913	+
914	+	cmdline_parser_release (&local_args_info);
915	+	return (EXIT_FAILURE);
916		}

Comparing trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords):
Revision 917 by tim, Fri Mar 24 17:29:07 2006 UTC vs.
Revision 1604 by jmichalk, Mon Aug 8 18:53:40 2011 UTC

#	Line 0 | Line 1
1	+	Author Id Revision Date

Diff Legend

–	Removed lines
+	Added lines
<	Changed lines
>	Changed lines