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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.c

Comparing trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents):
Revision 917 by tim, Fri Mar 24 17:29:07 2006 UTC vs.
Revision 1596 by gezelter, Mon Jul 25 17:30:53 2011 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F DynamicPropsCmd
4	>	gengetopt -F DynamicPropsCmd -u
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#include <getopt.h>
25
26		#include "DynamicPropsCmd.h"
27
28	+	const char *gengetopt_args_info_purpose = "";
29	+
30	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31	+
32	+	const char *gengetopt_args_info_description = "";
33	+
34	+	const char *gengetopt_args_info_help[] = {
35	+	"  -h, --help                    Print help and exit",
36	+	"  -V, --version                 Print version and exit",
37	+	"  -i, --input=filename          input dump file",
38	+	"  -o, --output=filename         output file name",
39	+	"      --sele1=selection script  select first stuntdouble set",
40	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41	+	"      --order=INT               Lengendre Polynomial Order",
42	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
43	+	"\n Group: dynamicProps\n   an option of this group is required",
44	+	"  -r, --rcorr                   rmsd",
45	+	"  -v, --vcorr                   velocity correlation function",
46	+	"  -d, --dcorr                   dipole correlation function",
47	+	"  -l, --lcorr                   Lengendre correlation function",
48	+	"      --r_rcorr                 Radial rmsd",
49	+	"      --thetacorr               Angular rmsd",
50	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
51	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
52	+	"      --stresscorr              Stress tensor correlation function",
53	+	0
54	+	};
55	+
56	+	typedef enum {ARG_NO
57	+	, ARG_STRING
58	+	, ARG_INT
59	+	} cmdline_parser_arg_type;
60	+
61	+	static
62	+	void clear_given (struct gengetopt_args_info *args_info);
63	+	static
64	+	void clear_args (struct gengetopt_args_info *args_info);
65	+
66	+	static int
67	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
68	+	struct cmdline_parser_params *params, const char *additional_error);
69	+
70	+	static int
71	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
72	+
73	+	static char *
74	+	gengetopt_strdup (const char *s);
75	+
76	+	static
77	+	void clear_given (struct gengetopt_args_info *args_info)
78	+	{
79	+	args_info->help_given = 0 ;
80	+	args_info->version_given = 0 ;
81	+	args_info->input_given = 0 ;
82	+	args_info->output_given = 0 ;
83	+	args_info->sele1_given = 0 ;
84	+	args_info->sele2_given = 0 ;
85	+	args_info->order_given = 0 ;
86	+	args_info->memory_given = 0 ;
87	+	args_info->rcorr_given = 0 ;
88	+	args_info->vcorr_given = 0 ;
89	+	args_info->dcorr_given = 0 ;
90	+	args_info->lcorr_given = 0 ;
91	+	args_info->r_rcorr_given = 0 ;
92	+	args_info->thetacorr_given = 0 ;
93	+	args_info->drcorr_given = 0 ;
94	+	args_info->helfandEcorr_given = 0 ;
95	+	args_info->stresscorr_given = 0 ;
96	+	args_info->dynamicProps_group_counter = 0 ;
97	+	}
98	+
99	+	static
100	+	void clear_args (struct gengetopt_args_info *args_info)
101	+	{
102	+	FIX_UNUSED (args_info);
103	+	args_info->input_arg = NULL;
104	+	args_info->input_orig = NULL;
105	+	args_info->output_arg = NULL;
106	+	args_info->output_orig = NULL;
107	+	args_info->sele1_arg = NULL;
108	+	args_info->sele1_orig = NULL;
109	+	args_info->sele2_arg = NULL;
110	+	args_info->sele2_orig = NULL;
111	+	args_info->order_orig = NULL;
112	+	args_info->memory_arg = gengetopt_strdup ("2G");
113	+	args_info->memory_orig = NULL;
114	+
115	+	}
116	+
117	+	static
118	+	void init_args_info(struct gengetopt_args_info *args_info)
119	+	{
120	+
121	+
122	+	args_info->help_help = gengetopt_args_info_help[0] ;
123	+	args_info->version_help = gengetopt_args_info_help[1] ;
124	+	args_info->input_help = gengetopt_args_info_help[2] ;
125	+	args_info->output_help = gengetopt_args_info_help[3] ;
126	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
127	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
128	+	args_info->order_help = gengetopt_args_info_help[6] ;
129	+	args_info->memory_help = gengetopt_args_info_help[7] ;
130	+	args_info->rcorr_help = gengetopt_args_info_help[9] ;
131	+	args_info->vcorr_help = gengetopt_args_info_help[10] ;
132	+	args_info->dcorr_help = gengetopt_args_info_help[11] ;
133	+	args_info->lcorr_help = gengetopt_args_info_help[12] ;
134	+	args_info->r_rcorr_help = gengetopt_args_info_help[13] ;
135	+	args_info->thetacorr_help = gengetopt_args_info_help[14] ;
136	+	args_info->drcorr_help = gengetopt_args_info_help[15] ;
137	+	args_info->helfandEcorr_help = gengetopt_args_info_help[16] ;
138	+	args_info->stresscorr_help = gengetopt_args_info_help[17] ;
139	+
140	+	}
141	+
142		void
143		cmdline_parser_print_version (void)
144		{
145	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
145	>	printf ("%s %s\n",
146	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
147	>	CMDLINE_PARSER_VERSION);
148		}
149
150	+	static void print_help_common(void) {
151	+	cmdline_parser_print_version ();
152	+
153	+	if (strlen(gengetopt_args_info_purpose) > 0)
154	+	printf("\n%s\n", gengetopt_args_info_purpose);
155	+
156	+	if (strlen(gengetopt_args_info_usage) > 0)
157	+	printf("\n%s\n", gengetopt_args_info_usage);
158	+
159	+	printf("\n");
160	+
161	+	if (strlen(gengetopt_args_info_description) > 0)
162	+	printf("%s\n\n", gengetopt_args_info_description);
163	+	}
164	+
165		void
166		cmdline_parser_print_help (void)
167		{
168	<	cmdline_parser_print_version ();
169	<	printf("\n"
170	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
171	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("      --order=INT               Lengendre Polynomial Order\n");
45	<	printf("\n");
46	<	printf(" Group: dynamicProps  an option of this group is required\n");
47	<	printf("  -r, --rcorr                   rmsd\n");
48	<	printf("  -v, --vcorr                   velocity correlation function\n");
49	<	printf("  -d, --dcorr                   dipole correlation function\n");
50	<	printf("  -l, --lcorr                   Lengendre correlation function\n");
168	>	int i = 0;
169	>	print_help_common();
170	>	while (gengetopt_args_info_help[i])
171	>	printf("%s\n", gengetopt_args_info_help[i++]);
172		}
173
174	+	void
175	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
176	+	{
177	+	clear_given (args_info);
178	+	clear_args (args_info);
179	+	init_args_info (args_info);
180
181	<	static char *gengetopt_strdup (const char *s);
181	>	args_info->inputs = 0;
182	>	args_info->inputs_num = 0;
183	>	}
184
185	<	/* gengetopt_strdup() */
186	<	/* strdup.c replacement of strdup, which is not standard */
185	>	void
186	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
187	>	{
188	>	if (params)
189	>	{
190	>	params->override = 0;
191	>	params->initialize = 1;
192	>	params->check_required = 1;
193	>	params->check_ambiguity = 0;
194	>	params->print_errors = 1;
195	>	}
196	>	}
197	>
198	>	struct cmdline_parser_params *
199	>	cmdline_parser_params_create(void)
200	>	{
201	>	struct cmdline_parser_params *params =
202	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
203	>	cmdline_parser_params_init(params);
204	>	return params;
205	>	}
206	>
207	>	static void
208	>	free_string_field (char **s)
209	>	{
210	>	if (*s)
211	>	{
212	>	free (*s);
213	>	*s = 0;
214	>	}
215	>	}
216	>
217	>
218	>	static void
219	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
220	>	{
221	>	unsigned int i;
222	>	free_string_field (&(args_info->input_arg));
223	>	free_string_field (&(args_info->input_orig));
224	>	free_string_field (&(args_info->output_arg));
225	>	free_string_field (&(args_info->output_orig));
226	>	free_string_field (&(args_info->sele1_arg));
227	>	free_string_field (&(args_info->sele1_orig));
228	>	free_string_field (&(args_info->sele2_arg));
229	>	free_string_field (&(args_info->sele2_orig));
230	>	free_string_field (&(args_info->order_orig));
231	>	free_string_field (&(args_info->memory_arg));
232	>	free_string_field (&(args_info->memory_orig));
233	>
234	>
235	>	for (i = 0; i < args_info->inputs_num; ++i)
236	>	free (args_info->inputs [i]);
237	>
238	>	if (args_info->inputs_num)
239	>	free (args_info->inputs);
240	>
241	>	clear_given (args_info);
242	>	}
243	>
244	>
245	>	static void
246	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
247	>	{
248	>	FIX_UNUSED (values);
249	>	if (arg) {
250	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
251	>	} else {
252	>	fprintf(outfile, "%s\n", opt);
253	>	}
254	>	}
255	>
256	>
257	>	int
258	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
259	>	{
260	>	int i = 0;
261	>
262	>	if (!outfile)
263	>	{
264	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
265	>	return EXIT_FAILURE;
266	>	}
267	>
268	>	if (args_info->help_given)
269	>	write_into_file(outfile, "help", 0, 0 );
270	>	if (args_info->version_given)
271	>	write_into_file(outfile, "version", 0, 0 );
272	>	if (args_info->input_given)
273	>	write_into_file(outfile, "input", args_info->input_orig, 0);
274	>	if (args_info->output_given)
275	>	write_into_file(outfile, "output", args_info->output_orig, 0);
276	>	if (args_info->sele1_given)
277	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
278	>	if (args_info->sele2_given)
279	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
280	>	if (args_info->order_given)
281	>	write_into_file(outfile, "order", args_info->order_orig, 0);
282	>	if (args_info->memory_given)
283	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
284	>	if (args_info->rcorr_given)
285	>	write_into_file(outfile, "rcorr", 0, 0 );
286	>	if (args_info->vcorr_given)
287	>	write_into_file(outfile, "vcorr", 0, 0 );
288	>	if (args_info->dcorr_given)
289	>	write_into_file(outfile, "dcorr", 0, 0 );
290	>	if (args_info->lcorr_given)
291	>	write_into_file(outfile, "lcorr", 0, 0 );
292	>	if (args_info->r_rcorr_given)
293	>	write_into_file(outfile, "r_rcorr", 0, 0 );
294	>	if (args_info->thetacorr_given)
295	>	write_into_file(outfile, "thetacorr", 0, 0 );
296	>	if (args_info->drcorr_given)
297	>	write_into_file(outfile, "drcorr", 0, 0 );
298	>	if (args_info->helfandEcorr_given)
299	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
300	>	if (args_info->stresscorr_given)
301	>	write_into_file(outfile, "stresscorr", 0, 0 );
302	>
303	>
304	>	i = EXIT_SUCCESS;
305	>	return i;
306	>	}
307	>
308	>	int
309	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
310	>	{
311	>	FILE *outfile;
312	>	int i = 0;
313	>
314	>	outfile = fopen(filename, "w");
315	>
316	>	if (!outfile)
317	>	{
318	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
319	>	return EXIT_FAILURE;
320	>	}
321	>
322	>	i = cmdline_parser_dump(outfile, args_info);
323	>	fclose (outfile);
324	>
325	>	return i;
326	>	}
327	>
328	>	void
329	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
330	>	{
331	>	cmdline_parser_release (args_info);
332	>	}
333	>
334	>	/** @brief replacement of strdup, which is not standard */
335		char *
336		gengetopt_strdup (const char *s)
337		{
338	<	char *result = (char*)malloc(strlen(s) + 1);
338	>	char *result = 0;
339	>	if (!s)
340	>	return result;
341	>
342	>	result = (char*)malloc(strlen(s) + 1);
343		if (result == (char*)0)
344		return (char*)0;
345		strcpy(result, s);
346		return result;
347		}
348
349	<	int
350	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
349	>	static void
350	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
351		{
352	<	int c;        /* Character of the parsed option.  */
353	<	int missing_required_options = 0;
73	<	int dynamicProps_group_counter = 0;
352	>	if (! args_info->dynamicProps_group_counter)
353	>	return;
354
75	–
76	–	args_info->help_given = 0 ;
77	–	args_info->version_given = 0 ;
78	–	args_info->input_given = 0 ;
79	–	args_info->output_given = 0 ;
80	–	args_info->sele1_given = 0 ;
81	–	args_info->sele2_given = 0 ;
82	–	args_info->order_given = 0 ;
355		args_info->rcorr_given = 0 ;
356		args_info->vcorr_given = 0 ;
357		args_info->dcorr_given = 0 ;
358		args_info->lcorr_given = 0 ;
359	<	#define clear_args() { \
360	<	args_info->input_arg = NULL; \
361	<	args_info->output_arg = NULL; \
362	<	args_info->sele1_arg = NULL; \
363	<	args_info->sele2_arg = NULL; \
359	>	args_info->r_rcorr_given = 0 ;
360	>	args_info->thetacorr_given = 0 ;
361	>	args_info->drcorr_given = 0 ;
362	>	args_info->helfandEcorr_given = 0 ;
363	>	args_info->stresscorr_given = 0 ;
364	>
365	>	args_info->dynamicProps_group_counter = 0;
366		}
367
368	<	clear_args();
368	>	int
369	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
370	>	{
371	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
372	>	}
373
374	+	int
375	+	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
376	+	struct cmdline_parser_params *params)
377	+	{
378	+	int result;
379	+	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
380	+
381	+	if (result == EXIT_FAILURE)
382	+	{
383	+	cmdline_parser_free (args_info);
384	+	exit (EXIT_FAILURE);
385	+	}
386	+
387	+	return result;
388	+	}
389	+
390	+	int
391	+	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
392	+	{
393	+	int result;
394	+	struct cmdline_parser_params params;
395	+
396	+	params.override = override;
397	+	params.initialize = initialize;
398	+	params.check_required = check_required;
399	+	params.check_ambiguity = 0;
400	+	params.print_errors = 1;
401	+
402	+	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
403	+
404	+	if (result == EXIT_FAILURE)
405	+	{
406	+	cmdline_parser_free (args_info);
407	+	exit (EXIT_FAILURE);
408	+	}
409	+
410	+	return result;
411	+	}
412	+
413	+	int
414	+	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
415	+	{
416	+	int result = EXIT_SUCCESS;
417	+
418	+	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
419	+	result = EXIT_FAILURE;
420	+
421	+	if (result == EXIT_FAILURE)
422	+	{
423	+	cmdline_parser_free (args_info);
424	+	exit (EXIT_FAILURE);
425	+	}
426	+
427	+	return result;
428	+	}
429	+
430	+	int
431	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
432	+	{
433	+	int error = 0;
434	+	FIX_UNUSED (additional_error);
435	+
436	+	/* checks for required options */
437	+	if (! args_info->input_given)
438	+	{
439	+	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
440	+	error = 1;
441	+	}
442	+
443	+	if (args_info->dynamicProps_group_counter == 0)
444	+	{
445	+	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
446	+	error = 1;
447	+	}
448	+
449	+
450	+	/* checks for dependences among options */
451	+
452	+	return error;
453	+	}
454	+
455	+
456	+	static char *package_name = 0;
457	+
458	+	/**
459	+	* @brief updates an option
460	+	* @param field the generic pointer to the field to update
461	+	* @param orig_field the pointer to the orig field
462	+	* @param field_given the pointer to the number of occurrence of this option
463	+	* @param prev_given the pointer to the number of occurrence already seen
464	+	* @param value the argument for this option (if null no arg was specified)
465	+	* @param possible_values the possible values for this option (if specified)
466	+	* @param default_value the default value (in case the option only accepts fixed values)
467	+	* @param arg_type the type of this option
468	+	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
469	+	* @param override @see cmdline_parser_params.override
470	+	* @param no_free whether to free a possible previous value
471	+	* @param multiple_option whether this is a multiple option
472	+	* @param long_opt the corresponding long option
473	+	* @param short_opt the corresponding short option (or '-' if none)
474	+	* @param additional_error possible further error specification
475	+	*/
476	+	static
477	+	int update_arg(void *field, char **orig_field,
478	+	unsigned int *field_given, unsigned int *prev_given,
479	+	char *value, const char *possible_values[],
480	+	const char *default_value,
481	+	cmdline_parser_arg_type arg_type,
482	+	int check_ambiguity, int override,
483	+	int no_free, int multiple_option,
484	+	const char *long_opt, char short_opt,
485	+	const char *additional_error)
486	+	{
487	+	char *stop_char = 0;
488	+	const char *val = value;
489	+	int found;
490	+	char **string_field;
491	+	FIX_UNUSED (field);
492	+
493	+	stop_char = 0;
494	+	found = 0;
495	+
496	+	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
497	+	{
498	+	if (short_opt != '-')
499	+	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
500	+	package_name, long_opt, short_opt,
501	+	(additional_error ? additional_error : ""));
502	+	else
503	+	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
504	+	package_name, long_opt,
505	+	(additional_error ? additional_error : ""));
506	+	return 1; /* failure */
507	+	}
508	+
509	+	FIX_UNUSED (default_value);
510	+
511	+	if (field_given && *field_given && ! override)
512	+	return 0;
513	+	if (prev_given)
514	+	(*prev_given)++;
515	+	if (field_given)
516	+	(*field_given)++;
517	+	if (possible_values)
518	+	val = possible_values[found];
519	+
520	+	switch(arg_type) {
521	+	case ARG_INT:
522	+	if (val) *((int *)field) = strtol (val, &stop_char, 0);
523	+	break;
524	+	case ARG_STRING:
525	+	if (val) {
526	+	string_field = (char **)field;
527	+	if (!no_free && *string_field)
528	+	free (*string_field); /* free previous string */
529	+	*string_field = gengetopt_strdup (val);
530	+	}
531	+	break;
532	+	default:
533	+	break;
534	+	};
535	+
536	+	/* check numeric conversion */
537	+	switch(arg_type) {
538	+	case ARG_INT:
539	+	if (val && !(stop_char && *stop_char == '\0')) {
540	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
541	+	return 1; /* failure */
542	+	}
543	+	break;
544	+	default:
545	+	;
546	+	};
547	+
548	+	/* store the original value */
549	+	switch(arg_type) {
550	+	case ARG_NO:
551	+	break;
552	+	default:
553	+	if (value && orig_field) {
554	+	if (no_free) {
555	+	*orig_field = value;
556	+	} else {
557	+	if (*orig_field)
558	+	free (*orig_field); /* free previous string */
559	+	*orig_field = gengetopt_strdup (value);
560	+	}
561	+	}
562	+	};
563	+
564	+	return 0; /* OK */
565	+	}
566	+
567	+
568	+	int
569	+	cmdline_parser_internal (
570	+	int argc, char **argv, struct gengetopt_args_info *args_info,
571	+	struct cmdline_parser_params *params, const char *additional_error)
572	+	{
573	+	int c;        /* Character of the parsed option.  */
574	+
575	+	int error = 0;
576	+	struct gengetopt_args_info local_args_info;
577	+
578	+	int override;
579	+	int initialize;
580	+	int check_required;
581	+	int check_ambiguity;
582	+
583	+	package_name = argv[0];
584	+
585	+	override = params->override;
586	+	initialize = params->initialize;
587	+	check_required = params->check_required;
588	+	check_ambiguity = params->check_ambiguity;
589	+
590	+	if (initialize)
591	+	cmdline_parser_init (args_info);
592	+
593	+	cmdline_parser_init (&local_args_info);
594	+
595		optarg = 0;
596	<	optind = 1;
597	<	opterr = 1;
596	>	optind = 0;
597	>	opterr = params->print_errors;
598		optopt = '?';
599
600		while (1)
601		{
602		int option_index = 0;
104	–	char *stop_char;
603
604		static struct option long_options[] = {
605		{ "help",       0, NULL, 'h' },
#	Line 111 | Line 609 | cmdline_parser (int argc, char * const *argv, struct g
609		{ "sele1",      1, NULL, 0 },
610		{ "sele2",      1, NULL, 0 },
611		{ "order",      1, NULL, 0 },
612	+	{ "memory",     1, NULL, 'm' },
613		{ "rcorr",      0, NULL, 'r' },
614		{ "vcorr",      0, NULL, 'v' },
615		{ "dcorr",      0, NULL, 'd' },
616		{ "lcorr",      0, NULL, 'l' },
617	<	{ NULL, 0, NULL, 0 }
617	>	{ "r_rcorr",    0, NULL, 0 },
618	>	{ "thetacorr",  0, NULL, 0 },
619	>	{ "drcorr",     0, NULL, 0 },
620	>	{ "helfandEcorr",       0, NULL, 0 },
621	>	{ "stresscorr", 0, NULL, 0 },
622	>	{ 0,  0, 0, 0 }
623		};
624
625	<	stop_char = 0;
122	<	c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index);
625	>	c = getopt_long (argc, argv, "hVi:o:m:rvdl", long_options, &option_index);
626
627		if (c == -1) break;       /* Exit from `while (1)' loop.  */
628
629		switch (c)
630		{
631		case 'h':       /* Print help and exit.  */
129	–	clear_args ();
632		cmdline_parser_print_help ();
633	+	cmdline_parser_free (&local_args_info);
634		exit (EXIT_SUCCESS);
635
636		case 'V':       /* Print version and exit.  */
134	–	clear_args ();
637		cmdline_parser_print_version ();
638	+	cmdline_parser_free (&local_args_info);
639		exit (EXIT_SUCCESS);
640
641		case 'i':       /* input dump file.  */
642	<	if (args_info->input_given)
643	<	{
644	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
645	<	clear_args ();
646	<	exit (EXIT_FAILURE);
647	<	}
648	<	args_info->input_given = 1;
649	<	args_info->input_arg = gengetopt_strdup (optarg);
642	>
643	>
644	>	if (update_arg( (void *)&(args_info->input_arg),
645	>	&(args_info->input_orig), &(args_info->input_given),
646	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
647	>	check_ambiguity, override, 0, 0,
648	>	"input", 'i',
649	>	additional_error))
650	>	goto failure;
651	>
652		break;
148	–
653		case 'o':       /* output file name.  */
654	<	if (args_info->output_given)
655	<	{
656	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
657	<	clear_args ();
658	<	exit (EXIT_FAILURE);
659	<	}
660	<	args_info->output_given = 1;
661	<	args_info->output_arg = gengetopt_strdup (optarg);
654	>
655	>
656	>	if (update_arg( (void *)&(args_info->output_arg),
657	>	&(args_info->output_orig), &(args_info->output_given),
658	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
659	>	check_ambiguity, override, 0, 0,
660	>	"output", 'o',
661	>	additional_error))
662	>	goto failure;
663	>
664		break;
665	<
665	>	case 'm':       /* Available memory (defaults to 2G).  */
666	>
667	>
668	>	if (update_arg( (void *)&(args_info->memory_arg),
669	>	&(args_info->memory_orig), &(args_info->memory_given),
670	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
671	>	check_ambiguity, override, 0, 0,
672	>	"memory", 'm',
673	>	additional_error))
674	>	goto failure;
675	>
676	>	break;
677		case 'r':       /* rmsd.  */
678	<	if (args_info->rcorr_given)
679	<	{
680	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
681	<	clear_args ();
682	<	exit (EXIT_FAILURE);
683	<	}
684	<	args_info->rcorr_given = 1;
685	<	dynamicProps_group_counter += 1;
686	<	break;
687	<
678	>
679	>	if (args_info->dynamicProps_group_counter && override)
680	>	reset_group_dynamicProps (args_info);
681	>	args_info->dynamicProps_group_counter += 1;
682	>
683	>	if (update_arg( 0 ,
684	>	0 , &(args_info->rcorr_given),
685	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
686	>	check_ambiguity, override, 0, 0,
687	>	"rcorr", 'r',
688	>	additional_error))
689	>	goto failure;
690	>
691	>	break;
692		case 'v':       /* velocity correlation function.  */
693	<	if (args_info->vcorr_given)
694	<	{
695	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
696	<	clear_args ();
697	<	exit (EXIT_FAILURE);
698	<	}
699	<	args_info->vcorr_given = 1;
700	<	dynamicProps_group_counter += 1;
701	<	break;
702	<
693	>
694	>	if (args_info->dynamicProps_group_counter && override)
695	>	reset_group_dynamicProps (args_info);
696	>	args_info->dynamicProps_group_counter += 1;
697	>
698	>	if (update_arg( 0 ,
699	>	0 , &(args_info->vcorr_given),
700	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
701	>	check_ambiguity, override, 0, 0,
702	>	"vcorr", 'v',
703	>	additional_error))
704	>	goto failure;
705	>
706	>	break;
707		case 'd':       /* dipole correlation function.  */
708	<	if (args_info->dcorr_given)
709	<	{
710	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
711	<	clear_args ();
712	<	exit (EXIT_FAILURE);
713	<	}
714	<	args_info->dcorr_given = 1;
715	<	dynamicProps_group_counter += 1;
716	<	break;
717	<
708	>
709	>	if (args_info->dynamicProps_group_counter && override)
710	>	reset_group_dynamicProps (args_info);
711	>	args_info->dynamicProps_group_counter += 1;
712	>
713	>	if (update_arg( 0 ,
714	>	0 , &(args_info->dcorr_given),
715	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
716	>	check_ambiguity, override, 0, 0,
717	>	"dcorr", 'd',
718	>	additional_error))
719	>	goto failure;
720	>
721	>	break;
722		case 'l':       /* Lengendre correlation function.  */
723	<	if (args_info->lcorr_given)
724	<	{
725	<	fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
726	<	clear_args ();
727	<	exit (EXIT_FAILURE);
728	<	}
729	<	args_info->lcorr_given = 1;
730	<	dynamicProps_group_counter += 1;
731	<	break;
723	>
724	>	if (args_info->dynamicProps_group_counter && override)
725	>	reset_group_dynamicProps (args_info);
726	>	args_info->dynamicProps_group_counter += 1;
727	>
728	>	if (update_arg( 0 ,
729	>	0 , &(args_info->lcorr_given),
730	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
731	>	check_ambiguity, override, 0, 0,
732	>	"lcorr", 'l',
733	>	additional_error))
734	>	goto failure;
735	>
736	>	break;
737
204	–
738		case 0: /* Long option with no short option */
739		/* select first stuntdouble set.  */
740		if (strcmp (long_options[option_index].name, "sele1") == 0)
741		{
209	–	if (args_info->sele1_given)
210	–	{
211	–	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
212	–	clear_args ();
213	–	exit (EXIT_FAILURE);
214	–	}
215	–	args_info->sele1_given = 1;
216	–	args_info->sele1_arg = gengetopt_strdup (optarg);
217	–	break;
218	–	}
742
743	+
744	+	if (update_arg( (void *)&(args_info->sele1_arg),
745	+	&(args_info->sele1_orig), &(args_info->sele1_given),
746	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
747	+	check_ambiguity, override, 0, 0,
748	+	"sele1", '-',
749	+	additional_error))
750	+	goto failure;
751	+
752	+	}
753		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
754		else if (strcmp (long_options[option_index].name, "sele2") == 0)
755		{
223	–	if (args_info->sele2_given)
224	–	{
225	–	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
226	–	clear_args ();
227	–	exit (EXIT_FAILURE);
228	–	}
229	–	args_info->sele2_given = 1;
230	–	args_info->sele2_arg = gengetopt_strdup (optarg);
231	–	break;
232	–	}
756
757	+
758	+	if (update_arg( (void *)&(args_info->sele2_arg),
759	+	&(args_info->sele2_orig), &(args_info->sele2_given),
760	+	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
761	+	check_ambiguity, override, 0, 0,
762	+	"sele2", '-',
763	+	additional_error))
764	+	goto failure;
765	+
766	+	}
767		/* Lengendre Polynomial Order.  */
768		else if (strcmp (long_options[option_index].name, "order") == 0)
769		{
770	<	if (args_info->order_given)
771	<	{
772	<	fprintf (stderr, "%s: `--order' option given more than once\n", CMDLINE_PARSER_PACKAGE);
773	<	clear_args ();
774	<	exit (EXIT_FAILURE);
775	<	}
776	<	args_info->order_given = 1;
777	<	args_info->order_arg = strtol (optarg,&stop_char,0);
778	<	break;
770	>
771	>
772	>	if (update_arg( (void *)&(args_info->order_arg),
773	>	&(args_info->order_orig), &(args_info->order_given),
774	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
775	>	check_ambiguity, override, 0, 0,
776	>	"order", '-',
777	>	additional_error))
778	>	goto failure;
779	>
780		}
781	+	/* Radial rmsd.  */
782	+	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
783	+	{
784
785	<
785	>	if (args_info->dynamicProps_group_counter && override)
786	>	reset_group_dynamicProps (args_info);
787	>	args_info->dynamicProps_group_counter += 1;
788	>
789	>	if (update_arg( 0 ,
790	>	0 , &(args_info->r_rcorr_given),
791	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
792	>	check_ambiguity, override, 0, 0,
793	>	"r_rcorr", '-',
794	>	additional_error))
795	>	goto failure;
796	>
797	>	}
798	>	/* Angular rmsd.  */
799	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
800	>	{
801	>
802	>	if (args_info->dynamicProps_group_counter && override)
803	>	reset_group_dynamicProps (args_info);
804	>	args_info->dynamicProps_group_counter += 1;
805	>
806	>	if (update_arg( 0 ,
807	>	0 , &(args_info->thetacorr_given),
808	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
809	>	check_ambiguity, override, 0, 0,
810	>	"thetacorr", '-',
811	>	additional_error))
812	>	goto failure;
813	>
814	>	}
815	>	/* Directional rmsd for particles with unit vectors.  */
816	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
817	>	{
818	>
819	>	if (args_info->dynamicProps_group_counter && override)
820	>	reset_group_dynamicProps (args_info);
821	>	args_info->dynamicProps_group_counter += 1;
822	>
823	>	if (update_arg( 0 ,
824	>	0 , &(args_info->drcorr_given),
825	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
826	>	check_ambiguity, override, 0, 0,
827	>	"drcorr", '-',
828	>	additional_error))
829	>	goto failure;
830	>
831	>	}
832	>	/* Helfand moment for thermal conductvity.  */
833	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
834	>	{
835	>
836	>	if (args_info->dynamicProps_group_counter && override)
837	>	reset_group_dynamicProps (args_info);
838	>	args_info->dynamicProps_group_counter += 1;
839	>
840	>	if (update_arg( 0 ,
841	>	0 , &(args_info->helfandEcorr_given),
842	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
843	>	check_ambiguity, override, 0, 0,
844	>	"helfandEcorr", '-',
845	>	additional_error))
846	>	goto failure;
847	>
848	>	}
849	>	/* Stress tensor correlation function.  */
850	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
851	>	{
852	>
853	>	if (args_info->dynamicProps_group_counter && override)
854	>	reset_group_dynamicProps (args_info);
855	>	args_info->dynamicProps_group_counter += 1;
856	>
857	>	if (update_arg( 0 ,
858	>	0 , &(args_info->stresscorr_given),
859	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
860	>	check_ambiguity, override, 0, 0,
861	>	"stresscorr", '-',
862	>	additional_error))
863	>	goto failure;
864	>
865	>	}
866	>
867	>	break;
868		case '?':       /* Invalid option.  */
869		/* `getopt_long' already printed an error message.  */
870	<	exit (EXIT_FAILURE);
870	>	goto failure;
871
872		default:        /* bug: option not considered.  */
873	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
873	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
874		abort ();
875		} /* switch */
876		} /* while */
877
878	<	if ( dynamicProps_group_counter != 1)
878	>	if (args_info->dynamicProps_group_counter > 1)
879		{
880	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
881	<	missing_required_options = 1;
880	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
881	>	error = 1;
882		}
883
884
885	<	if (! args_info->input_given)
885	>
886	>	if (check_required)
887		{
888	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
269	<	missing_required_options = 1;
888	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
889		}
271	–	if ( missing_required_options )
272	–	exit (EXIT_FAILURE);
890
891	+	cmdline_parser_release (&local_args_info);
892	+
893	+	if ( error )
894	+	return (EXIT_FAILURE);
895	+
896	+	if (optind < argc)
897	+	{
898	+	int i = 0 ;
899	+	int found_prog_name = 0;
900	+	/* whether program name, i.e., argv[0], is in the remaining args
901	+	(this may happen with some implementations of getopt,
902	+	but surely not with the one included by gengetopt) */
903	+
904	+	i = optind;
905	+	while (i < argc)
906	+	if (argv[i++] == argv[0]) {
907	+	found_prog_name = 1;
908	+	break;
909	+	}
910	+	i = 0;
911	+
912	+	args_info->inputs_num = argc - optind - found_prog_name;
913	+	args_info->inputs =
914	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
915	+	while (optind < argc)
916	+	if (argv[optind++] != argv[0])
917	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
918	+	}
919	+
920		return 0;
921	+
922	+	failure:
923	+
924	+	cmdline_parser_release (&local_args_info);
925	+	return (EXIT_FAILURE);
926		}

Comparing trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords):
Revision 917 by tim, Fri Mar 24 17:29:07 2006 UTC vs.
Revision 1596 by gezelter, Mon Jul 25 17:30:53 2011 UTC

#	Line 0 | Line 1
1	+	Author Id Revision Date

Diff Legend

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+	Added lines
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