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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.c
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Comparing trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents):
Revision 1566 by chuckv, Thu May 19 18:12:09 2011 UTC vs.
Revision 1615 by gezelter, Fri Aug 26 17:55:44 2011 UTC

# Line 1 | Line 1
1   /*
2    File autogenerated by gengetopt version 2.22.4
3    generated with the following command:
4 <  gengetopt
4 >  gengetopt -F DynamicPropsCmd -u
5  
6    The developers of gengetopt consider the fixed text that goes in all
7    gengetopt output files to be in the public domain:
# Line 27 | Line 27 | const char *gengetopt_args_info_purpose = "";
27  
28   const char *gengetopt_args_info_purpose = "";
29  
30 < const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]...";
30 > const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31  
32   const char *gengetopt_args_info_description = "";
33  
# Line 39 | Line 39 | const char *gengetopt_args_info_help[] = {
39    "      --sele1=selection script  select first stuntdouble set",
40    "      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41    "      --order=INT               Lengendre Polynomial Order",
42 +  "  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
43    "\n Group: dynamicProps\n   an option of this group is required",
44    "  -r, --rcorr                   rmsd",
45    "  -v, --vcorr                   velocity correlation function",
46    "  -d, --dcorr                   dipole correlation function",
47    "  -l, --lcorr                   Lengendre correlation function",
48 +  "  -s, --sdcorr                  System dipole correlation function",
49    "      --r_rcorr                 Radial rmsd",
50    "      --thetacorr               Angular rmsd",
51    "      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
52    "      --helfandEcorr            Helfand moment for thermal conductvity",
53 +  "  -p, --momentum                Helfand momentum for viscosity",
54    "      --stresscorr              Stress tensor correlation function",
55      0
56   };
# Line 82 | Line 85 | void clear_given (struct gengetopt_args_info *args_inf
85    args_info->sele1_given = 0 ;
86    args_info->sele2_given = 0 ;
87    args_info->order_given = 0 ;
88 +  args_info->memory_given = 0 ;
89    args_info->rcorr_given = 0 ;
90    args_info->vcorr_given = 0 ;
91    args_info->dcorr_given = 0 ;
92    args_info->lcorr_given = 0 ;
93 +  args_info->sdcorr_given = 0 ;
94    args_info->r_rcorr_given = 0 ;
95    args_info->thetacorr_given = 0 ;
96    args_info->drcorr_given = 0 ;
97    args_info->helfandEcorr_given = 0 ;
98 +  args_info->momentum_given = 0 ;
99    args_info->stresscorr_given = 0 ;
100    args_info->dynamicProps_group_counter = 0 ;
101   }
# Line 107 | Line 113 | void clear_args (struct gengetopt_args_info *args_info
113    args_info->sele2_arg = NULL;
114    args_info->sele2_orig = NULL;
115    args_info->order_orig = NULL;
116 +  args_info->memory_arg = gengetopt_strdup ("2G");
117 +  args_info->memory_orig = NULL;
118    
119   }
120  
# Line 122 | Line 130 | void init_args_info(struct gengetopt_args_info *args_i
130    args_info->sele1_help = gengetopt_args_info_help[4] ;
131    args_info->sele2_help = gengetopt_args_info_help[5] ;
132    args_info->order_help = gengetopt_args_info_help[6] ;
133 <  args_info->rcorr_help = gengetopt_args_info_help[8] ;
134 <  args_info->vcorr_help = gengetopt_args_info_help[9] ;
135 <  args_info->dcorr_help = gengetopt_args_info_help[10] ;
136 <  args_info->lcorr_help = gengetopt_args_info_help[11] ;
137 <  args_info->r_rcorr_help = gengetopt_args_info_help[12] ;
138 <  args_info->thetacorr_help = gengetopt_args_info_help[13] ;
139 <  args_info->drcorr_help = gengetopt_args_info_help[14] ;
140 <  args_info->helfandEcorr_help = gengetopt_args_info_help[15] ;
141 <  args_info->stresscorr_help = gengetopt_args_info_help[16] ;
133 >  args_info->memory_help = gengetopt_args_info_help[7] ;
134 >  args_info->rcorr_help = gengetopt_args_info_help[9] ;
135 >  args_info->vcorr_help = gengetopt_args_info_help[10] ;
136 >  args_info->dcorr_help = gengetopt_args_info_help[11] ;
137 >  args_info->lcorr_help = gengetopt_args_info_help[12] ;
138 >  args_info->sdcorr_help = gengetopt_args_info_help[13] ;
139 >  args_info->r_rcorr_help = gengetopt_args_info_help[14] ;
140 >  args_info->thetacorr_help = gengetopt_args_info_help[15] ;
141 >  args_info->drcorr_help = gengetopt_args_info_help[16] ;
142 >  args_info->helfandEcorr_help = gengetopt_args_info_help[17] ;
143 >  args_info->momentum_help = gengetopt_args_info_help[18] ;
144 >  args_info->stresscorr_help = gengetopt_args_info_help[19] ;
145    
146   }
147  
# Line 172 | Line 183 | cmdline_parser_init (struct gengetopt_args_info *args_
183    clear_given (args_info);
184    clear_args (args_info);
185    init_args_info (args_info);
186 +
187 +  args_info->inputs = 0;
188 +  args_info->inputs_num = 0;
189   }
190  
191   void
# Line 210 | Line 224 | cmdline_parser_release (struct gengetopt_args_info *ar
224   static void
225   cmdline_parser_release (struct gengetopt_args_info *args_info)
226   {
227 <
227 >  unsigned int i;
228    free_string_field (&(args_info->input_arg));
229    free_string_field (&(args_info->input_orig));
230    free_string_field (&(args_info->output_arg));
# Line 220 | Line 234 | cmdline_parser_release (struct gengetopt_args_info *ar
234    free_string_field (&(args_info->sele2_arg));
235    free_string_field (&(args_info->sele2_orig));
236    free_string_field (&(args_info->order_orig));
237 +  free_string_field (&(args_info->memory_arg));
238 +  free_string_field (&(args_info->memory_orig));
239    
240    
241 +  for (i = 0; i < args_info->inputs_num; ++i)
242 +    free (args_info->inputs [i]);
243  
244 +  if (args_info->inputs_num)
245 +    free (args_info->inputs);
246 +
247    clear_given (args_info);
248   }
249  
# Line 264 | Line 285 | cmdline_parser_dump(FILE *outfile, struct gengetopt_ar
285      write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
286    if (args_info->order_given)
287      write_into_file(outfile, "order", args_info->order_orig, 0);
288 +  if (args_info->memory_given)
289 +    write_into_file(outfile, "memory", args_info->memory_orig, 0);
290    if (args_info->rcorr_given)
291      write_into_file(outfile, "rcorr", 0, 0 );
292    if (args_info->vcorr_given)
# Line 272 | Line 295 | cmdline_parser_dump(FILE *outfile, struct gengetopt_ar
295      write_into_file(outfile, "dcorr", 0, 0 );
296    if (args_info->lcorr_given)
297      write_into_file(outfile, "lcorr", 0, 0 );
298 +  if (args_info->sdcorr_given)
299 +    write_into_file(outfile, "sdcorr", 0, 0 );
300    if (args_info->r_rcorr_given)
301      write_into_file(outfile, "r_rcorr", 0, 0 );
302    if (args_info->thetacorr_given)
# Line 280 | Line 305 | cmdline_parser_dump(FILE *outfile, struct gengetopt_ar
305      write_into_file(outfile, "drcorr", 0, 0 );
306    if (args_info->helfandEcorr_given)
307      write_into_file(outfile, "helfandEcorr", 0, 0 );
308 +  if (args_info->momentum_given)
309 +    write_into_file(outfile, "momentum", 0, 0 );
310    if (args_info->stresscorr_given)
311      write_into_file(outfile, "stresscorr", 0, 0 );
312    
# Line 339 | Line 366 | reset_group_dynamicProps(struct gengetopt_args_info *a
366    args_info->vcorr_given = 0 ;
367    args_info->dcorr_given = 0 ;
368    args_info->lcorr_given = 0 ;
369 +  args_info->sdcorr_given = 0 ;
370    args_info->r_rcorr_given = 0 ;
371    args_info->thetacorr_given = 0 ;
372    args_info->drcorr_given = 0 ;
373    args_info->helfandEcorr_given = 0 ;
374 +  args_info->momentum_given = 0 ;
375    args_info->stresscorr_given = 0 ;
376  
377    args_info->dynamicProps_group_counter = 0;
# Line 592 | Line 621 | cmdline_parser_internal (
621          { "sele1",      1, NULL, 0 },
622          { "sele2",      1, NULL, 0 },
623          { "order",      1, NULL, 0 },
624 +        { "memory",     1, NULL, 'm' },
625          { "rcorr",      0, NULL, 'r' },
626          { "vcorr",      0, NULL, 'v' },
627          { "dcorr",      0, NULL, 'd' },
628          { "lcorr",      0, NULL, 'l' },
629 +        { "sdcorr",     0, NULL, 's' },
630          { "r_rcorr",    0, NULL, 0 },
631          { "thetacorr",  0, NULL, 0 },
632          { "drcorr",     0, NULL, 0 },
633          { "helfandEcorr",       0, NULL, 0 },
634 +        { "momentum",   0, NULL, 'p' },
635          { "stresscorr", 0, NULL, 0 },
636          { 0,  0, 0, 0 }
637        };
638  
639 <      c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index);
639 >      c = getopt_long (argc, argv, "hVi:o:m:rvdlsp", long_options, &option_index);
640  
641        if (c == -1) break;       /* Exit from `while (1)' loop.  */
642  
# Line 640 | Line 672 | cmdline_parser_internal (
672                &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
673                check_ambiguity, override, 0, 0,
674                "output", 'o',
675 +              additional_error))
676 +            goto failure;
677 +        
678 +          break;
679 +        case 'm':       /* Available memory (defaults to 2G).  */
680 +        
681 +        
682 +          if (update_arg( (void *)&(args_info->memory_arg),
683 +               &(args_info->memory_orig), &(args_info->memory_given),
684 +              &(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
685 +              check_ambiguity, override, 0, 0,
686 +              "memory", 'm',
687                additional_error))
688              goto failure;
689          
# Line 704 | Line 748 | cmdline_parser_internal (
748              goto failure;
749          
750            break;
751 +        case 's':       /* System dipole correlation function.  */
752 +        
753 +          if (args_info->dynamicProps_group_counter && override)
754 +            reset_group_dynamicProps (args_info);
755 +          args_info->dynamicProps_group_counter += 1;
756 +        
757 +          if (update_arg( 0 ,
758 +               0 , &(args_info->sdcorr_given),
759 +              &(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
760 +              check_ambiguity, override, 0, 0,
761 +              "sdcorr", 's',
762 +              additional_error))
763 +            goto failure;
764 +        
765 +          break;
766 +        case 'p':       /* Helfand momentum for viscosity.  */
767 +        
768 +          if (args_info->dynamicProps_group_counter && override)
769 +            reset_group_dynamicProps (args_info);
770 +          args_info->dynamicProps_group_counter += 1;
771 +        
772 +          if (update_arg( 0 ,
773 +               0 , &(args_info->momentum_given),
774 +              &(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
775 +              check_ambiguity, override, 0, 0,
776 +              "momentum", 'p',
777 +              additional_error))
778 +            goto failure;
779 +        
780 +          break;
781  
782          case 0: /* Long option with no short option */
783            /* select first stuntdouble set.  */
# Line 863 | Line 937 | cmdline_parser_internal (
937    if ( error )
938      return (EXIT_FAILURE);
939  
940 +  if (optind < argc)
941 +    {
942 +      int i = 0 ;
943 +      int found_prog_name = 0;
944 +      /* whether program name, i.e., argv[0], is in the remaining args
945 +         (this may happen with some implementations of getopt,
946 +          but surely not with the one included by gengetopt) */
947 +
948 +      i = optind;
949 +      while (i < argc)
950 +        if (argv[i++] == argv[0]) {
951 +          found_prog_name = 1;
952 +          break;
953 +        }
954 +      i = 0;
955 +
956 +      args_info->inputs_num = argc - optind - found_prog_name;
957 +      args_info->inputs =
958 +        (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
959 +      while (optind < argc)
960 +        if (argv[optind++] != argv[0])
961 +          args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
962 +    }
963 +
964    return 0;
965  
966   failure:

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