applications/dynamicProps/DynamicPropsCmd.c

/*
  File autogenerated by gengetopt version 2.22.4
  generated with the following command:
  gengetopt -F DynamicPropsCmd -u 

  The developers of gengetopt consider the fixed text that goes in all
  gengetopt output files to be in the public domain:
  we make no copyright claims on it.
*/

/* If we use autoconf.  */
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif

#include <stdio.h>
#include <stdlib.h>
#include <string.h>

#ifndef FIX_UNUSED
#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
#endif

#include <getopt.h>

#include "DynamicPropsCmd.h"

const char *gengetopt_args_info_purpose = "";

const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";

const char *gengetopt_args_info_description = "";

const char *gengetopt_args_info_help[] = {
  "  -h, --help                    Print help and exit",
  "  -V, --version                 Print version and exit",
  "  -i, --input=filename          input dump file",
  "  -o, --output=filename         output file name",
  "      --sele1=selection script  select first stuntdouble set",
  "      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
  "      --order=INT               Lengendre Polynomial Order",
  "  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
  "\n Group: dynamicProps\n   an option of this group is required",
  "  -r, --rcorr                   rmsd",
  "  -v, --vcorr                   velocity correlation function",
  "  -d, --dcorr                   dipole correlation function",
  "  -l, --lcorr                   Lengendre correlation function",
  "      --r_rcorr                 Radial rmsd",
  "      --thetacorr               Angular rmsd",
  "      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
  "      --helfandEcorr            Helfand moment for thermal conductvity",
  "      --stresscorr              Stress tensor correlation function",
    0
};

typedef enum {ARG_NO
  , ARG_STRING
  , ARG_INT
} cmdline_parser_arg_type;

static
void clear_given (struct gengetopt_args_info *args_info);
static
void clear_args (struct gengetopt_args_info *args_info);

static int
cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
                        struct cmdline_parser_params *params, const char *additional_error);

static int
cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);

static char *
gengetopt_strdup (const char *s);

static
void clear_given (struct gengetopt_args_info *args_info)
{
  args_info->help_given = 0 ;
  args_info->version_given = 0 ;
  args_info->input_given = 0 ;
  args_info->output_given = 0 ;
  args_info->sele1_given = 0 ;
  args_info->sele2_given = 0 ;
  args_info->order_given = 0 ;
  args_info->memory_given = 0 ;
  args_info->rcorr_given = 0 ;
  args_info->vcorr_given = 0 ;
  args_info->dcorr_given = 0 ;
  args_info->lcorr_given = 0 ;
  args_info->r_rcorr_given = 0 ;
  args_info->thetacorr_given = 0 ;
  args_info->drcorr_given = 0 ;
  args_info->helfandEcorr_given = 0 ;
  args_info->stresscorr_given = 0 ;
  args_info->dynamicProps_group_counter = 0 ;
}

static
void clear_args (struct gengetopt_args_info *args_info)
{
  FIX_UNUSED (args_info);
  args_info->input_arg = NULL;
  args_info->input_orig = NULL;
  args_info->output_arg = NULL;
  args_info->output_orig = NULL;
  args_info->sele1_arg = NULL;
  args_info->sele1_orig = NULL;
  args_info->sele2_arg = NULL;
  args_info->sele2_orig = NULL;
  args_info->order_orig = NULL;
  args_info->memory_arg = gengetopt_strdup ("2G");
  args_info->memory_orig = NULL;
  
}

static
void init_args_info(struct gengetopt_args_info *args_info)
{


  args_info->help_help = gengetopt_args_info_help[0] ;
  args_info->version_help = gengetopt_args_info_help[1] ;
  args_info->input_help = gengetopt_args_info_help[2] ;
  args_info->output_help = gengetopt_args_info_help[3] ;
  args_info->sele1_help = gengetopt_args_info_help[4] ;
  args_info->sele2_help = gengetopt_args_info_help[5] ;
  args_info->order_help = gengetopt_args_info_help[6] ;
  args_info->memory_help = gengetopt_args_info_help[7] ;
  args_info->rcorr_help = gengetopt_args_info_help[9] ;
  args_info->vcorr_help = gengetopt_args_info_help[10] ;
  args_info->dcorr_help = gengetopt_args_info_help[11] ;
  args_info->lcorr_help = gengetopt_args_info_help[12] ;
  args_info->r_rcorr_help = gengetopt_args_info_help[13] ;
  args_info->thetacorr_help = gengetopt_args_info_help[14] ;
  args_info->drcorr_help = gengetopt_args_info_help[15] ;
  args_info->helfandEcorr_help = gengetopt_args_info_help[16] ;
  args_info->stresscorr_help = gengetopt_args_info_help[17] ;
  
}

void
cmdline_parser_print_version (void)
{
  printf ("%s %s\n",
     (strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
     CMDLINE_PARSER_VERSION);
}

static void print_help_common(void) {
  cmdline_parser_print_version ();

  if (strlen(gengetopt_args_info_purpose) > 0)
    printf("\n%s\n", gengetopt_args_info_purpose);

  if (strlen(gengetopt_args_info_usage) > 0)
    printf("\n%s\n", gengetopt_args_info_usage);

  printf("\n");

  if (strlen(gengetopt_args_info_description) > 0)
    printf("%s\n\n", gengetopt_args_info_description);
}

void
cmdline_parser_print_help (void)
{
  int i = 0;
  print_help_common();
  while (gengetopt_args_info_help[i])
    printf("%s\n", gengetopt_args_info_help[i++]);
}

void
cmdline_parser_init (struct gengetopt_args_info *args_info)
{
  clear_given (args_info);
  clear_args (args_info);
  init_args_info (args_info);

  args_info->inputs = 0;
  args_info->inputs_num = 0;
}

void
cmdline_parser_params_init(struct cmdline_parser_params *params)
{
  if (params)
    { 
      params->override = 0;
      params->initialize = 1;
      params->check_required = 1;
      params->check_ambiguity = 0;
      params->print_errors = 1;
    }
}

struct cmdline_parser_params *
cmdline_parser_params_create(void)
{
  struct cmdline_parser_params *params = 
    (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
  cmdline_parser_params_init(params);  
  return params;
}

static void
free_string_field (char **s)
{
  if (*s)
    {
      free (*s);
      *s = 0;
    }
}


static void
cmdline_parser_release (struct gengetopt_args_info *args_info)
{
  unsigned int i;
  free_string_field (&(args_info->input_arg));
  free_string_field (&(args_info->input_orig));
  free_string_field (&(args_info->output_arg));
  free_string_field (&(args_info->output_orig));
  free_string_field (&(args_info->sele1_arg));
  free_string_field (&(args_info->sele1_orig));
  free_string_field (&(args_info->sele2_arg));
  free_string_field (&(args_info->sele2_orig));
  free_string_field (&(args_info->order_orig));
  free_string_field (&(args_info->memory_arg));
  free_string_field (&(args_info->memory_orig));
  
  
  for (i = 0; i < args_info->inputs_num; ++i)
    free (args_info->inputs [i]);

  if (args_info->inputs_num)
    free (args_info->inputs);

  clear_given (args_info);
}


static void
write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
{
  FIX_UNUSED (values);
  if (arg) {
    fprintf(outfile, "%s=\"%s\"\n", opt, arg);
  } else {
    fprintf(outfile, "%s\n", opt);
  }
}


int
cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
{
  int i = 0;

  if (!outfile)
    {
      fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
      return EXIT_FAILURE;
    }

  if (args_info->help_given)
    write_into_file(outfile, "help", 0, 0 );
  if (args_info->version_given)
    write_into_file(outfile, "version", 0, 0 );
  if (args_info->input_given)
    write_into_file(outfile, "input", args_info->input_orig, 0);
  if (args_info->output_given)
    write_into_file(outfile, "output", args_info->output_orig, 0);
  if (args_info->sele1_given)
    write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
  if (args_info->sele2_given)
    write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
  if (args_info->order_given)
    write_into_file(outfile, "order", args_info->order_orig, 0);
  if (args_info->memory_given)
    write_into_file(outfile, "memory", args_info->memory_orig, 0);
  if (args_info->rcorr_given)
    write_into_file(outfile, "rcorr", 0, 0 );
  if (args_info->vcorr_given)
    write_into_file(outfile, "vcorr", 0, 0 );
  if (args_info->dcorr_given)
    write_into_file(outfile, "dcorr", 0, 0 );
  if (args_info->lcorr_given)
    write_into_file(outfile, "lcorr", 0, 0 );
  if (args_info->r_rcorr_given)
    write_into_file(outfile, "r_rcorr", 0, 0 );
  if (args_info->thetacorr_given)
    write_into_file(outfile, "thetacorr", 0, 0 );
  if (args_info->drcorr_given)
    write_into_file(outfile, "drcorr", 0, 0 );
  if (args_info->helfandEcorr_given)
    write_into_file(outfile, "helfandEcorr", 0, 0 );
  if (args_info->stresscorr_given)
    write_into_file(outfile, "stresscorr", 0, 0 );
  

  i = EXIT_SUCCESS;
  return i;
}

int
cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
{
  FILE *outfile;
  int i = 0;

  outfile = fopen(filename, "w");

  if (!outfile)
    {
      fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
      return EXIT_FAILURE;
    }

  i = cmdline_parser_dump(outfile, args_info);
  fclose (outfile);

  return i;
}

void
cmdline_parser_free (struct gengetopt_args_info *args_info)
{
  cmdline_parser_release (args_info);
}

/** @brief replacement of strdup, which is not standard */
char *
gengetopt_strdup (const char *s)
{
  char *result = 0;
  if (!s)
    return result;

  result = (char*)malloc(strlen(s) + 1);
  if (result == (char*)0)
    return (char*)0;
  strcpy(result, s);
  return result;
}

static void
reset_group_dynamicProps(struct gengetopt_args_info *args_info)
{
  if (! args_info->dynamicProps_group_counter)
    return;
  
  args_info->rcorr_given = 0 ;
  args_info->vcorr_given = 0 ;
  args_info->dcorr_given = 0 ;
  args_info->lcorr_given = 0 ;
  args_info->r_rcorr_given = 0 ;
  args_info->thetacorr_given = 0 ;
  args_info->drcorr_given = 0 ;
  args_info->helfandEcorr_given = 0 ;
  args_info->stresscorr_given = 0 ;

  args_info->dynamicProps_group_counter = 0;
}

int
cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
{
  return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
}

int
cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
                   struct cmdline_parser_params *params)
{
  int result;
  result = cmdline_parser_internal (argc, argv, args_info, params, 0);

  if (result == EXIT_FAILURE)
    {
      cmdline_parser_free (args_info);
      exit (EXIT_FAILURE);
    }
  
  return result;
}

int
cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
{
  int result;
  struct cmdline_parser_params params;
  
  params.override = override;
  params.initialize = initialize;
  params.check_required = check_required;
  params.check_ambiguity = 0;
  params.print_errors = 1;

  result = cmdline_parser_internal (argc, argv, args_info, &params, 0);

  if (result == EXIT_FAILURE)
    {
      cmdline_parser_free (args_info);
      exit (EXIT_FAILURE);
    }
  
  return result;
}

int
cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
{
  int result = EXIT_SUCCESS;

  if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
    result = EXIT_FAILURE;

  if (result == EXIT_FAILURE)
    {
      cmdline_parser_free (args_info);
      exit (EXIT_FAILURE);
    }
  
  return result;
}

int
cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
{
  int error = 0;
  FIX_UNUSED (additional_error);

  /* checks for required options */
  if (! args_info->input_given)
    {
      fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
      error = 1;
    }
  
  if (args_info->dynamicProps_group_counter == 0)
    {
      fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
      error = 1;
    }
  

  /* checks for dependences among options */

  return error;
}


static char *package_name = 0;

/**
 * @brief updates an option
 * @param field the generic pointer to the field to update
 * @param orig_field the pointer to the orig field
 * @param field_given the pointer to the number of occurrence of this option
 * @param prev_given the pointer to the number of occurrence already seen
 * @param value the argument for this option (if null no arg was specified)
 * @param possible_values the possible values for this option (if specified)
 * @param default_value the default value (in case the option only accepts fixed values)
 * @param arg_type the type of this option
 * @param check_ambiguity @see cmdline_parser_params.check_ambiguity
 * @param override @see cmdline_parser_params.override
 * @param no_free whether to free a possible previous value
 * @param multiple_option whether this is a multiple option
 * @param long_opt the corresponding long option
 * @param short_opt the corresponding short option (or '-' if none)
 * @param additional_error possible further error specification
 */
static
int update_arg(void *field, char **orig_field,
               unsigned int *field_given, unsigned int *prev_given, 
               char *value, const char *possible_values[],
               const char *default_value,
               cmdline_parser_arg_type arg_type,
               int check_ambiguity, int override,
               int no_free, int multiple_option,
               const char *long_opt, char short_opt,
               const char *additional_error)
{
  char *stop_char = 0;
  const char *val = value;
  int found;
  char **string_field;
  FIX_UNUSED (field);

  stop_char = 0;
  found = 0;

  if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
    {
      if (short_opt != '-')
        fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n", 
               package_name, long_opt, short_opt,
               (additional_error ? additional_error : ""));
      else
        fprintf (stderr, "%s: `--%s' option given more than once%s\n", 
               package_name, long_opt,
               (additional_error ? additional_error : ""));
      return 1; /* failure */
    }

  FIX_UNUSED (default_value);
    
  if (field_given && *field_given && ! override)
    return 0;
  if (prev_given)
    (*prev_given)++;
  if (field_given)
    (*field_given)++;
  if (possible_values)
    val = possible_values[found];

  switch(arg_type) {
  case ARG_INT:
    if (val) *((int *)field) = strtol (val, &stop_char, 0);
    break;
  case ARG_STRING:
    if (val) {
      string_field = (char **)field;
      if (!no_free && *string_field)
        free (*string_field); /* free previous string */
      *string_field = gengetopt_strdup (val);
    }
    break;
  default:
    break;
  };

  /* check numeric conversion */
  switch(arg_type) {
  case ARG_INT:
    if (val && !(stop_char && *stop_char == '\0')) {
      fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
      return 1; /* failure */
    }
    break;
  default:
    ;
  };

  /* store the original value */
  switch(arg_type) {
  case ARG_NO:
    break;
  default:
    if (value && orig_field) {
      if (no_free) {
        *orig_field = value;
      } else {
        if (*orig_field)
          free (*orig_field); /* free previous string */
        *orig_field = gengetopt_strdup (value);
      }
    }
  };

  return 0; /* OK */
}


int
cmdline_parser_internal (
  int argc, char **argv, struct gengetopt_args_info *args_info,
                        struct cmdline_parser_params *params, const char *additional_error)
{
  int c;        /* Character of the parsed option.  */

  int error = 0;
  struct gengetopt_args_info local_args_info;
  
  int override;
  int initialize;
  int check_required;
  int check_ambiguity;
  
  package_name = argv[0];
  
  override = params->override;
  initialize = params->initialize;
  check_required = params->check_required;
  check_ambiguity = params->check_ambiguity;

  if (initialize)
    cmdline_parser_init (args_info);

  cmdline_parser_init (&local_args_info);

  optarg = 0;
  optind = 0;
  opterr = params->print_errors;
  optopt = '?';

  while (1)
    {
      int option_index = 0;

      static struct option long_options[] = {
        { "help",       0, NULL, 'h' },
        { "version",    0, NULL, 'V' },
        { "input",      1, NULL, 'i' },
        { "output",     1, NULL, 'o' },
        { "sele1",      1, NULL, 0 },
        { "sele2",      1, NULL, 0 },
        { "order",      1, NULL, 0 },
        { "memory",     1, NULL, 'm' },
        { "rcorr",      0, NULL, 'r' },
        { "vcorr",      0, NULL, 'v' },
        { "dcorr",      0, NULL, 'd' },
        { "lcorr",      0, NULL, 'l' },
        { "r_rcorr",    0, NULL, 0 },
        { "thetacorr",  0, NULL, 0 },
        { "drcorr",     0, NULL, 0 },
        { "helfandEcorr",       0, NULL, 0 },
        { "stresscorr", 0, NULL, 0 },
        { 0,  0, 0, 0 }
      };

      c = getopt_long (argc, argv, "hVi:o:m:rvdl", long_options, &option_index);

      if (c == -1) break;       /* Exit from `while (1)' loop.  */

      switch (c)
        {
        case 'h':       /* Print help and exit.  */
          cmdline_parser_print_help ();
          cmdline_parser_free (&local_args_info);
          exit (EXIT_SUCCESS);

        case 'V':       /* Print version and exit.  */
          cmdline_parser_print_version ();
          cmdline_parser_free (&local_args_info);
          exit (EXIT_SUCCESS);

        case 'i':       /* input dump file.  */
        
        
          if (update_arg( (void *)&(args_info->input_arg), 
               &(args_info->input_orig), &(args_info->input_given),
              &(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
              check_ambiguity, override, 0, 0,
              "input", 'i',
              additional_error))
            goto failure;
        
          break;
        case 'o':       /* output file name.  */
        
        
          if (update_arg( (void *)&(args_info->output_arg), 
               &(args_info->output_orig), &(args_info->output_given),
              &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
              check_ambiguity, override, 0, 0,
              "output", 'o',
              additional_error))
            goto failure;
        
          break;
        case 'm':       /* Available memory (defaults to 2G).  */
        
        
          if (update_arg( (void *)&(args_info->memory_arg), 
               &(args_info->memory_orig), &(args_info->memory_given),
              &(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
              check_ambiguity, override, 0, 0,
              "memory", 'm',
              additional_error))
            goto failure;
        
          break;
        case 'r':       /* rmsd.  */
        
          if (args_info->dynamicProps_group_counter && override)
            reset_group_dynamicProps (args_info);
          args_info->dynamicProps_group_counter += 1;
        
          if (update_arg( 0 , 
               0 , &(args_info->rcorr_given),
              &(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
              check_ambiguity, override, 0, 0,
              "rcorr", 'r',
              additional_error))
            goto failure;
        
          break;
        case 'v':       /* velocity correlation function.  */
        
          if (args_info->dynamicProps_group_counter && override)
            reset_group_dynamicProps (args_info);
          args_info->dynamicProps_group_counter += 1;
        
          if (update_arg( 0 , 
               0 , &(args_info->vcorr_given),
              &(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
              check_ambiguity, override, 0, 0,
              "vcorr", 'v',
              additional_error))
            goto failure;
        
          break;
        case 'd':       /* dipole correlation function.  */
        
          if (args_info->dynamicProps_group_counter && override)
            reset_group_dynamicProps (args_info);
          args_info->dynamicProps_group_counter += 1;
        
          if (update_arg( 0 , 
               0 , &(args_info->dcorr_given),
              &(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
              check_ambiguity, override, 0, 0,
              "dcorr", 'd',
              additional_error))
            goto failure;
        
          break;
        case 'l':       /* Lengendre correlation function.  */
        
          if (args_info->dynamicProps_group_counter && override)
            reset_group_dynamicProps (args_info);
          args_info->dynamicProps_group_counter += 1;
        
          if (update_arg( 0 , 
               0 , &(args_info->lcorr_given),
              &(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
              check_ambiguity, override, 0, 0,
              "lcorr", 'l',
              additional_error))
            goto failure;
        
          break;

        case 0: /* Long option with no short option */
          /* select first stuntdouble set.  */
          if (strcmp (long_options[option_index].name, "sele1") == 0)
          {
          
          
            if (update_arg( (void *)&(args_info->sele1_arg), 
                 &(args_info->sele1_orig), &(args_info->sele1_given),
                &(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
                check_ambiguity, override, 0, 0,
                "sele1", '-',
                additional_error))
              goto failure;
          
          }
          /* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
          else if (strcmp (long_options[option_index].name, "sele2") == 0)
          {
          
          
            if (update_arg( (void *)&(args_info->sele2_arg), 
                 &(args_info->sele2_orig), &(args_info->sele2_given),
                &(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
                check_ambiguity, override, 0, 0,
                "sele2", '-',
                additional_error))
              goto failure;
          
          }
          /* Lengendre Polynomial Order.  */
          else if (strcmp (long_options[option_index].name, "order") == 0)
          {
          
          
            if (update_arg( (void *)&(args_info->order_arg), 
                 &(args_info->order_orig), &(args_info->order_given),
                &(local_args_info.order_given), optarg, 0, 0, ARG_INT,
                check_ambiguity, override, 0, 0,
                "order", '-',
                additional_error))
              goto failure;
          
          }
          /* Radial rmsd.  */
          else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
          {
          
            if (args_info->dynamicProps_group_counter && override)
              reset_group_dynamicProps (args_info);
            args_info->dynamicProps_group_counter += 1;
          
            if (update_arg( 0 , 
                 0 , &(args_info->r_rcorr_given),
                &(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
                check_ambiguity, override, 0, 0,
                "r_rcorr", '-',
                additional_error))
              goto failure;
          
          }
          /* Angular rmsd.  */
          else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
          {
          
            if (args_info->dynamicProps_group_counter && override)
              reset_group_dynamicProps (args_info);
            args_info->dynamicProps_group_counter += 1;
          
            if (update_arg( 0 , 
                 0 , &(args_info->thetacorr_given),
                &(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
                check_ambiguity, override, 0, 0,
                "thetacorr", '-',
                additional_error))
              goto failure;
          
          }
          /* Directional rmsd for particles with unit vectors.  */
          else if (strcmp (long_options[option_index].name, "drcorr") == 0)
          {
          
            if (args_info->dynamicProps_group_counter && override)
              reset_group_dynamicProps (args_info);
            args_info->dynamicProps_group_counter += 1;
          
            if (update_arg( 0 , 
                 0 , &(args_info->drcorr_given),
                &(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
                check_ambiguity, override, 0, 0,
                "drcorr", '-',
                additional_error))
              goto failure;
          
          }
          /* Helfand moment for thermal conductvity.  */
          else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
          {
          
            if (args_info->dynamicProps_group_counter && override)
              reset_group_dynamicProps (args_info);
            args_info->dynamicProps_group_counter += 1;
          
            if (update_arg( 0 , 
                 0 , &(args_info->helfandEcorr_given),
                &(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
                check_ambiguity, override, 0, 0,
                "helfandEcorr", '-',
                additional_error))
              goto failure;
          
          }
          /* Stress tensor correlation function.  */
          else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
          {
          
            if (args_info->dynamicProps_group_counter && override)
              reset_group_dynamicProps (args_info);
            args_info->dynamicProps_group_counter += 1;
          
            if (update_arg( 0 , 
                 0 , &(args_info->stresscorr_given),
                &(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
                check_ambiguity, override, 0, 0,
                "stresscorr", '-',
                additional_error))
              goto failure;
          
          }
          
          break;
        case '?':       /* Invalid option.  */
          /* `getopt_long' already printed an error message.  */
          goto failure;

        default:        /* bug: option not considered.  */
          fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
          abort ();
        } /* switch */
    } /* while */

  if (args_info->dynamicProps_group_counter > 1)
    {
      fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
      error = 1;
    }
  

  if (check_required)
    {
      error += cmdline_parser_required2 (args_info, argv[0], additional_error);
    }

  cmdline_parser_release (&local_args_info);

  if ( error )
    return (EXIT_FAILURE);

  if (optind < argc)
    {
      int i = 0 ;
      int found_prog_name = 0;
      /* whether program name, i.e., argv[0], is in the remaining args
         (this may happen with some implementations of getopt,
          but surely not with the one included by gengetopt) */

      i = optind;
      while (i < argc)
        if (argv[i++] == argv[0]) {
          found_prog_name = 1;
          break;
        }
      i = 0;

      args_info->inputs_num = argc - optind - found_prog_name;
      args_info->inputs =
        (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
      while (optind < argc)
        if (argv[optind++] != argv[0])
          args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
    }

  return 0;

failure:
  
  cmdline_parser_release (&local_args_info);
  return (EXIT_FAILURE);
}
Revision:	1596
Committed:	Mon Jul 25 17:30:53 2011 UTC (13 years, 9 months ago) by gezelter
Content type:	text/plain
File size:	28245 byte(s)
Log Message:	Updated the BlockSnapshotManager to use a specified memory footprint in constructor and not to rely on physmem and residentMem to figure out free memory. DynamicProps is the only program that uses the BlockSnapshotManager, so substantial changes were needed there as well.