MERGE OpenMD development 1783:1878 into trunk
Adding the selection correlation function, fixing a sample directory
MERGE OpenMD development branch 1465:1781 into trunk
Added Momentum correlation function, imported changes from Vector from development branch, updated comments in some integrators
This commit should allow EADM simulations to be run on the cluster. Main additions include EADM_FF.hpp/cpp as well as a system dipole correlation option in DynamicProps.
Updated the BlockSnapshotManager to use a specified memory footprint in constructor and not to rely on physmem and residentMem to figure out free memory. DynamicProps is the only program that uses the BlockSnapshotManager, so substantial changes were needed there as well.
Updated some bugs so dynamic props builds again. Stress Corr func is still a work in progress.
Added files for stress correlation funcion.
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Checking in changes for Hefland moment calculations
fixed a few correlation functions
Added: Action Correlation function (for viscosity), Directional RCorr (for non-spherical bodies) Modified: LCorr (for multiple axes)
Changes to add thetacorr to dynamic props and fixes to radial rcorr.
Code to run radial rcorr.
Changing utility programs to use the new file format
back to previous DynamicProps
Adding position correlation function. The command line option for DynamicProps is now changed. --rcorr is for position correlation and --rmsd is for mean square displacement.
Adding :LegendrePolynomial
xemacs has been drafted to perform our indentation services
refactory CorrelationFunction
dynamicProps get built
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