--- trunk/src/applications/dump2Xyz/Dump2XYZCmd.c	2005/03/09 18:46:16	415
+++ trunk/src/applications/dump2Xyz/Dump2XYZCmd.c	2006/05/10 01:44:48	954
@@ -1,7 +1,7 @@
 /*
   File autogenerated by gengetopt version 2.11
   generated with the following command:
-  /home/maul/gezelter/tim/bin/gengetopt -F Dump2XYZCmd 
+  /home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F Dump2XYZCmd 
 
   The developers of gengetopt consider the fixed text that goes in all
   gengetopt output files to be in the public domain:
@@ -51,6 +51,8 @@ cmdline_parser_print_help (void)
   printf("      --repeatX=INT                  The number of images to repeat in the x \n                                       direction  (default=`0')\n");
   printf("      --repeatY=INT                  The number of images to repeat in the y \n                                       direction  (default=`0')\n");
   printf("      --repeatZ=INT                  The number of images to repeat in the z \n                                       direction  (default=`0')\n");
+  printf("      --gb=atomtype                  Replace the Gay-Berne atom with four \n                                       linear atoms\n");
+  printf("  -b, --basetype                     Convert to base atom type  (default=off)\n");
 }
 
 
@@ -90,6 +92,8 @@ cmdline_parser (int argc, char * const *argv, struct g
   args_info->repeatX_given = 0 ;
   args_info->repeatY_given = 0 ;
   args_info->repeatZ_given = 0 ;
+  args_info->gb_given = 0 ;
+  args_info->basetype_given = 0 ;
 #define clear_args() { \
   args_info->input_arg = NULL; \
   args_info->output_arg = NULL; \
@@ -105,6 +109,8 @@ cmdline_parser (int argc, char * const *argv, struct g
   args_info->repeatX_arg = 0 ;\
   args_info->repeatY_arg = 0 ;\
   args_info->repeatZ_arg = 0 ;\
+  args_info->gb_arg = NULL; \
+  args_info->basetype_flag = 0;\
 }
 
   clear_args();
@@ -136,11 +142,13 @@ cmdline_parser (int argc, char * const *argv, struct g
         { "repeatX",	1, NULL, 0 },
         { "repeatY",	1, NULL, 0 },
         { "repeatZ",	1, NULL, 0 },
+        { "gb",	1, NULL, 0 },
+        { "basetype",	0, NULL, 'b' },
         { NULL,	0, NULL, 0 }
       };
 
       stop_char = 0;
-      c = getopt_long (argc, argv, "hVi:o:n:wmzrts:", long_options, &option_index);
+      c = getopt_long (argc, argv, "hVi:o:n:wmzrts:b", long_options, &option_index);
 
       if (c == -1) break;	/* Exit from `while (1)' loop.  */
 
@@ -255,7 +263,18 @@ cmdline_parser (int argc, char * const *argv, struct g
           args_info->selection_arg = gengetopt_strdup (optarg);
           break;
 
+        case 'b':	/* Convert to base atom type.  */
+          if (args_info->basetype_given)
+            {
+              fprintf (stderr, "%s: `--basetype' (`-b') option given more than once\n", CMDLINE_PARSER_PACKAGE);
+              clear_args ();
+              exit (EXIT_FAILURE);
+            }
+          args_info->basetype_given = 1;
+          args_info->basetype_flag = !(args_info->basetype_flag);
+          break;
 
+
         case 0:	/* Long option with no short option */
           /* select origin.  */
           if (strcmp (long_options[option_index].name, "originsele") == 0)
@@ -327,6 +346,20 @@ cmdline_parser (int argc, char * const *argv, struct g
             break;
           }
           
+          /* Replace the Gay-Berne atom with four linear atoms.  */
+          else if (strcmp (long_options[option_index].name, "gb") == 0)
+          {
+            if (args_info->gb_given)
+              {
+                fprintf (stderr, "%s: `--gb' option given more than once\n", CMDLINE_PARSER_PACKAGE);
+                clear_args ();
+                exit (EXIT_FAILURE);
+              }
+            args_info->gb_given = 1;
+            args_info->gb_arg = gengetopt_strdup (optarg);
+            break;
+          }
+          
 
         case '?':	/* Invalid option.  */
           /* `getopt_long' already printed an error message.  */