--- trunk/src/applications/dump2Xyz/Dump2XYZCmd.c	2005/03/09 17:30:29	413
+++ trunk/src/applications/dump2Xyz/Dump2XYZCmd.c	2005/05/26 22:45:00	543
@@ -1,7 +1,7 @@
 /*
   File autogenerated by gengetopt version 2.11
   generated with the following command:
-  /home/maul/gezelter/tim/bin/gengetopt -F Dump2XYZCmd 
+  /home/maul/gezelter/tim/bin/gengetopt -i Dump2XYZ.ggo -F Dump2XYZCmd 
 
   The developers of gengetopt consider the fixed text that goes in all
   gengetopt output files to be in the public domain:
@@ -45,7 +45,8 @@ cmdline_parser_print_help (void)
   printf("  -z, --zconstraint                  replace the atom types of zconstraint \n                                       molecules  (default=off)\n");
   printf("  -r, --rigidbody                    add a pseudo COM atom to rigidbody  \n                                       (default=off)\n");
   printf("  -t, --watertype                    replace the atom type of water model  \n                                       (default=on)\n");
-  printf("  -s, --selection=selection script   general selection syntax(now only support \n                                       select atoms within a specified range)\n");
+  printf("  -b, --basetype                     using base atom type  (default=off)\n");
+  printf("  -s, --selection=selection script   general selection syntax\n");
   printf("      --originsele=selection script  select origin\n");
   printf("      --refsele=selection script     select reference\n");
   printf("      --repeatX=INT                  The number of images to repeat in the x \n                                       direction  (default=`0')\n");
@@ -84,6 +85,7 @@ cmdline_parser (int argc, char * const *argv, struct g
   args_info->zconstraint_given = 0 ;
   args_info->rigidbody_given = 0 ;
   args_info->watertype_given = 0 ;
+  args_info->basetype_given = 0 ;
   args_info->selection_given = 0 ;
   args_info->originsele_given = 0 ;
   args_info->refsele_given = 0 ;
@@ -99,6 +101,7 @@ cmdline_parser (int argc, char * const *argv, struct g
   args_info->zconstraint_flag = 0;\
   args_info->rigidbody_flag = 0;\
   args_info->watertype_flag = 1;\
+  args_info->basetype_flag = 0;\
   args_info->selection_arg = NULL; \
   args_info->originsele_arg = NULL; \
   args_info->refsele_arg = NULL; \
@@ -130,6 +133,7 @@ cmdline_parser (int argc, char * const *argv, struct g
         { "zconstraint",	0, NULL, 'z' },
         { "rigidbody",	0, NULL, 'r' },
         { "watertype",	0, NULL, 't' },
+        { "basetype",	0, NULL, 'b' },
         { "selection",	1, NULL, 's' },
         { "originsele",	1, NULL, 0 },
         { "refsele",	1, NULL, 0 },
@@ -140,7 +144,7 @@ cmdline_parser (int argc, char * const *argv, struct g
       };
 
       stop_char = 0;
-      c = getopt_long (argc, argv, "hVi:o:n:wmzrts:", long_options, &option_index);
+      c = getopt_long (argc, argv, "hVi:o:n:wmzrtbs:", long_options, &option_index);
 
       if (c == -1) break;	/* Exit from `while (1)' loop.  */
 
@@ -244,7 +248,18 @@ cmdline_parser (int argc, char * const *argv, struct g
           args_info->watertype_flag = !(args_info->watertype_flag);
           break;
 
-        case 's':	/* general selection syntax(now only support select atoms within a specified range).  */
+        case 'b':	/* using base atom type.  */
+          if (args_info->basetype_given)
+            {
+              fprintf (stderr, "%s: `--basetype' (`-b') option given more than once\n", CMDLINE_PARSER_PACKAGE);
+              clear_args ();
+              exit (EXIT_FAILURE);
+            }
+          args_info->basetype_given = 1;
+          args_info->basetype_flag = !(args_info->basetype_flag);
+          break;
+
+        case 's':	/* general selection syntax.  */
           if (args_info->selection_given)
             {
               fprintf (stderr, "%s: `--selection' (`-s') option given more than once\n", CMDLINE_PARSER_PACKAGE);