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root/OpenMD/trunk/src/UseTheForce/doForces.F90
Revision: 1508
Committed: Tue Oct 5 18:45:32 2010 UTC (14 years, 7 months ago) by gezelter
File size: 67258 byte(s)
Log Message:
slight boost by avoiding anint calls in doForces

File Contents

# Content
1 !!
2 !! Copyright (c) 2005, 2009 The University of Notre Dame. All Rights Reserved.
3 !!
4 !! The University of Notre Dame grants you ("Licensee") a
5 !! non-exclusive, royalty free, license to use, modify and
6 !! redistribute this software in source and binary code form, provided
7 !! that the following conditions are met:
8 !!
9 !! 1. Redistributions of source code must retain the above copyright
10 !! notice, this list of conditions and the following disclaimer.
11 !!
12 !! 2. Redistributions in binary form must reproduce the above copyright
13 !! notice, this list of conditions and the following disclaimer in the
14 !! documentation and/or other materials provided with the
15 !! distribution.
16 !!
17 !! This software is provided "AS IS," without a warranty of any
18 !! kind. All express or implied conditions, representations and
19 !! warranties, including any implied warranty of merchantability,
20 !! fitness for a particular purpose or non-infringement, are hereby
21 !! excluded. The University of Notre Dame and its licensors shall not
22 !! be liable for any damages suffered by licensee as a result of
23 !! using, modifying or distributing the software or its
24 !! derivatives. In no event will the University of Notre Dame or its
25 !! licensors be liable for any lost revenue, profit or data, or for
26 !! direct, indirect, special, consequential, incidental or punitive
27 !! damages, however caused and regardless of the theory of liability,
28 !! arising out of the use of or inability to use software, even if the
29 !! University of Notre Dame has been advised of the possibility of
30 !! such damages.
31 !!
32 !! SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
33 !! research, please cite the appropriate papers when you publish your
34 !! work. Good starting points are:
35 !!
36 !! [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37 !! [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38 !! [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39 !! [4] Vardeman & Gezelter, in progress (2009).
40 !!
41
42 !! doForces.F90
43 !! module doForces
44 !! Calculates Long Range forces.
45
46 !! @author Charles F. Vardeman II
47 !! @author Matthew Meineke
48 !! @version $Id$, $Date$, $Name: not supported by cvs2svn $, $Revision$
49
50
51 module doForces
52 use force_globals
53 use fForceOptions
54 use simulation
55 use definitions
56 use atype_module
57 use switcheroo
58 use neighborLists
59 use lj
60 use sticky
61 use electrostatic_module
62 use gayberne
63 use shapes
64 use vector_class
65 use eam
66 use MetalNonMetal
67 use suttonchen
68 use status
69 #ifdef IS_MPI
70 use mpiSimulation
71 #endif
72
73 implicit none
74 PRIVATE
75
76 #define __FORTRAN90
77 #include "UseTheForce/fCutoffPolicy.h"
78 #include "UseTheForce/DarkSide/fInteractionMap.h"
79 #include "UseTheForce/DarkSide/fElectrostaticSummationMethod.h"
80
81 INTEGER, PARAMETER:: PREPAIR_LOOP = 1
82 INTEGER, PARAMETER:: PAIR_LOOP = 2
83
84 logical, save :: haveNeighborList = .false.
85 logical, save :: haveSIMvariables = .false.
86 logical, save :: haveSaneForceField = .false.
87 logical, save :: haveInteractionHash = .false.
88 logical, save :: haveGtypeCutoffMap = .false.
89 logical, save :: haveDefaultCutoffs = .false.
90 logical, save :: haveSkinThickness = .false.
91 logical, save :: haveElectrostaticSummationMethod = .false.
92 logical, save :: haveCutoffPolicy = .false.
93 logical, save :: VisitCutoffsAfterComputing = .false.
94 logical, save :: do_box_dipole = .false.
95
96 logical, save :: FF_uses_DirectionalAtoms
97 logical, save :: FF_uses_Dipoles
98 logical, save :: FF_uses_GayBerne
99 logical, save :: FF_uses_EAM
100 logical, save :: FF_uses_SC
101 logical, save :: FF_uses_MNM
102
103
104 logical, save :: SIM_uses_DirectionalAtoms
105 logical, save :: SIM_uses_EAM
106 logical, save :: SIM_uses_SC
107 logical, save :: SIM_uses_MNM
108 logical, save :: SIM_requires_postpair_calc
109 logical, save :: SIM_requires_prepair_calc
110 logical, save :: SIM_uses_PBC
111 logical, save :: SIM_uses_AtomicVirial
112
113 integer, save :: electrostaticSummationMethod
114 integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY
115
116 real(kind=dp), save :: defaultRcut, defaultRsw, largestRcut
117 real(kind=dp), save :: skinThickness
118 logical, save :: defaultDoShiftPot
119 logical, save :: defaultDoShiftFrc
120
121 public :: init_FF
122 public :: setCutoffs
123 public :: cWasLame
124 public :: setElectrostaticMethod
125 public :: setBoxDipole
126 public :: getBoxDipole
127 public :: setCutoffPolicy
128 public :: setSkinThickness
129 public :: do_force_loop
130
131 #ifdef PROFILE
132 public :: getforcetime
133 real, save :: forceTime = 0
134 real :: forceTimeInitial, forceTimeFinal
135 integer :: nLoops
136 #endif
137
138 !! Variables for cutoff mapping and interaction mapping
139 ! Bit hash to determine pair-pair interactions.
140 integer, dimension(:,:), allocatable :: InteractionHash
141 real(kind=dp), dimension(:), allocatable :: atypeMaxCutoff
142 real(kind=dp), dimension(:), allocatable, target :: groupMaxCutoffRow
143 real(kind=dp), dimension(:), pointer :: groupMaxCutoffCol
144
145 integer, dimension(:), allocatable, target :: groupToGtypeRow
146 integer, dimension(:), pointer :: groupToGtypeCol => null()
147
148 real(kind=dp), dimension(:), allocatable,target :: gtypeMaxCutoffRow
149 real(kind=dp), dimension(:), pointer :: gtypeMaxCutoffCol
150 type ::gtypeCutoffs
151 real(kind=dp) :: rcut
152 real(kind=dp) :: rcutsq
153 real(kind=dp) :: rlistsq
154 end type gtypeCutoffs
155 type(gtypeCutoffs), dimension(:,:), allocatable :: gtypeCutoffMap
156
157 real(kind=dp), dimension(3) :: boxDipole
158
159 contains
160
161 subroutine createInteractionHash()
162 integer :: nAtypes
163 integer :: i
164 integer :: j
165 integer :: iHash
166 !! Test Types
167 logical :: i_is_LJ
168 logical :: i_is_Elect
169 logical :: i_is_Sticky
170 logical :: i_is_StickyP
171 logical :: i_is_GB
172 logical :: i_is_EAM
173 logical :: i_is_Shape
174 logical :: i_is_SC
175 logical :: j_is_LJ
176 logical :: j_is_Elect
177 logical :: j_is_Sticky
178 logical :: j_is_StickyP
179 logical :: j_is_GB
180 logical :: j_is_EAM
181 logical :: j_is_Shape
182 logical :: j_is_SC
183 real(kind=dp) :: myRcut
184
185 if (.not. associated(atypes)) then
186 call handleError("doForces", "atypes was not present before call of createInteractionHash!")
187 return
188 endif
189
190 nAtypes = getSize(atypes)
191
192 if (nAtypes == 0) then
193 call handleError("doForces", "nAtypes was zero during call of createInteractionHash!")
194 return
195 end if
196
197 if (.not. allocated(InteractionHash)) then
198 allocate(InteractionHash(nAtypes,nAtypes))
199 else
200 deallocate(InteractionHash)
201 allocate(InteractionHash(nAtypes,nAtypes))
202 endif
203
204 if (.not. allocated(atypeMaxCutoff)) then
205 allocate(atypeMaxCutoff(nAtypes))
206 else
207 deallocate(atypeMaxCutoff)
208 allocate(atypeMaxCutoff(nAtypes))
209 endif
210
211 do i = 1, nAtypes
212 call getElementProperty(atypes, i, "is_LennardJones", i_is_LJ)
213 call getElementProperty(atypes, i, "is_Electrostatic", i_is_Elect)
214 call getElementProperty(atypes, i, "is_Sticky", i_is_Sticky)
215 call getElementProperty(atypes, i, "is_StickyPower", i_is_StickyP)
216 call getElementProperty(atypes, i, "is_GayBerne", i_is_GB)
217 call getElementProperty(atypes, i, "is_EAM", i_is_EAM)
218 call getElementProperty(atypes, i, "is_Shape", i_is_Shape)
219 call getElementProperty(atypes, i, "is_SC", i_is_SC)
220
221 do j = i, nAtypes
222
223 iHash = 0
224 myRcut = 0.0_dp
225
226 call getElementProperty(atypes, j, "is_LennardJones", j_is_LJ)
227 call getElementProperty(atypes, j, "is_Electrostatic", j_is_Elect)
228 call getElementProperty(atypes, j, "is_Sticky", j_is_Sticky)
229 call getElementProperty(atypes, j, "is_StickyPower", j_is_StickyP)
230 call getElementProperty(atypes, j, "is_GayBerne", j_is_GB)
231 call getElementProperty(atypes, j, "is_EAM", j_is_EAM)
232 call getElementProperty(atypes, j, "is_Shape", j_is_Shape)
233 call getElementProperty(atypes, j, "is_SC", j_is_SC)
234
235 if (i_is_LJ .and. j_is_LJ) then
236 iHash = ior(iHash, LJ_PAIR)
237 endif
238
239 if (i_is_Elect .and. j_is_Elect) then
240 iHash = ior(iHash, ELECTROSTATIC_PAIR)
241 endif
242
243 if (i_is_Sticky .and. j_is_Sticky) then
244 iHash = ior(iHash, STICKY_PAIR)
245 endif
246
247 if (i_is_StickyP .and. j_is_StickyP) then
248 iHash = ior(iHash, STICKYPOWER_PAIR)
249 endif
250
251 if (i_is_EAM .and. j_is_EAM) then
252 iHash = ior(iHash, EAM_PAIR)
253 endif
254
255 if (i_is_SC .and. j_is_SC) then
256 iHash = ior(iHash, SC_PAIR)
257 endif
258
259 if (i_is_GB .and. j_is_GB) iHash = ior(iHash, GAYBERNE_PAIR)
260 if (i_is_GB .and. j_is_LJ) iHash = ior(iHash, GAYBERNE_LJ)
261 if (i_is_LJ .and. j_is_GB) iHash = ior(iHash, GAYBERNE_LJ)
262
263 if ((i_is_EAM.or.i_is_SC).and.(.not.(j_is_EAM.or.j_is_SC))) iHash = ior(iHash, MNM_PAIR)
264 if ((j_is_EAM.or.j_is_SC).and.(.not.(i_is_EAM.or.i_is_SC))) iHash = ior(iHash, MNM_PAIR)
265
266 if (i_is_Shape .and. j_is_Shape) iHash = ior(iHash, SHAPE_PAIR)
267 if (i_is_Shape .and. j_is_LJ) iHash = ior(iHash, SHAPE_LJ)
268 if (i_is_LJ .and. j_is_Shape) iHash = ior(iHash, SHAPE_LJ)
269
270
271 InteractionHash(i,j) = iHash
272 InteractionHash(j,i) = iHash
273
274 end do
275
276 end do
277
278 haveInteractionHash = .true.
279 end subroutine createInteractionHash
280
281 subroutine createGtypeCutoffMap()
282
283 logical :: i_is_LJ
284 logical :: i_is_Elect
285 logical :: i_is_Sticky
286 logical :: i_is_StickyP
287 logical :: i_is_GB
288 logical :: i_is_EAM
289 logical :: i_is_Shape
290 logical :: i_is_SC
291 logical :: GtypeFound
292
293 integer :: myStatus, nAtypes, i, j, istart, iend, jstart, jend
294 integer :: n_in_i, me_i, ia, g, atom1, ja, n_in_j,me_j
295 integer :: nGroupsInRow
296 integer :: nGroupsInCol
297 integer :: nGroupTypesRow,nGroupTypesCol
298 real(kind=dp):: thisSigma, bigSigma, thisRcut, tradRcut, tol
299 real(kind=dp) :: biggestAtypeCutoff
300
301 if (.not. haveInteractionHash) then
302 call createInteractionHash()
303 endif
304 #ifdef IS_MPI
305 nGroupsInRow = getNgroupsInRow(plan_group_row)
306 nGroupsInCol = getNgroupsInCol(plan_group_col)
307 #endif
308 nAtypes = getSize(atypes)
309 ! Set all of the initial cutoffs to zero.
310 atypeMaxCutoff = 0.0_dp
311 biggestAtypeCutoff = 0.0_dp
312 do i = 1, nAtypes
313 if (SimHasAtype(i)) then
314 call getElementProperty(atypes, i, "is_LennardJones", i_is_LJ)
315 call getElementProperty(atypes, i, "is_Electrostatic", i_is_Elect)
316 call getElementProperty(atypes, i, "is_Sticky", i_is_Sticky)
317 call getElementProperty(atypes, i, "is_StickyPower", i_is_StickyP)
318 call getElementProperty(atypes, i, "is_GayBerne", i_is_GB)
319 call getElementProperty(atypes, i, "is_EAM", i_is_EAM)
320 call getElementProperty(atypes, i, "is_Shape", i_is_Shape)
321 call getElementProperty(atypes, i, "is_SC", i_is_SC)
322
323 if (haveDefaultCutoffs) then
324 atypeMaxCutoff(i) = defaultRcut
325 else
326 if (i_is_LJ) then
327 thisRcut = getSigma(i) * 2.5_dp
328 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
329 endif
330 if (i_is_Elect) then
331 thisRcut = defaultRcut
332 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
333 endif
334 if (i_is_Sticky) then
335 thisRcut = getStickyCut(i)
336 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
337 endif
338 if (i_is_StickyP) then
339 thisRcut = getStickyPowerCut(i)
340 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
341 endif
342 if (i_is_GB) then
343 thisRcut = getGayBerneCut(i)
344 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
345 endif
346 if (i_is_EAM) then
347 thisRcut = getEAMCut(i)
348 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
349 endif
350 if (i_is_Shape) then
351 thisRcut = getShapeCut(i)
352 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
353 endif
354 if (i_is_SC) then
355 thisRcut = getSCCut(i)
356 if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut
357 endif
358 endif
359
360 if (atypeMaxCutoff(i).gt.biggestAtypeCutoff) then
361 biggestAtypeCutoff = atypeMaxCutoff(i)
362 endif
363
364 endif
365 enddo
366
367 istart = 1
368 jstart = 1
369 #ifdef IS_MPI
370 iend = nGroupsInRow
371 jend = nGroupsInCol
372 #else
373 iend = nGroups
374 jend = nGroups
375 #endif
376
377 !! allocate the groupToGtype and gtypeMaxCutoff here.
378 if(.not.allocated(groupToGtypeRow)) then
379 ! allocate(groupToGtype(iend))
380 allocate(groupToGtypeRow(iend))
381 else
382 deallocate(groupToGtypeRow)
383 allocate(groupToGtypeRow(iend))
384 endif
385 if(.not.allocated(groupMaxCutoffRow)) then
386 allocate(groupMaxCutoffRow(iend))
387 else
388 deallocate(groupMaxCutoffRow)
389 allocate(groupMaxCutoffRow(iend))
390 end if
391
392 if(.not.allocated(gtypeMaxCutoffRow)) then
393 allocate(gtypeMaxCutoffRow(iend))
394 else
395 deallocate(gtypeMaxCutoffRow)
396 allocate(gtypeMaxCutoffRow(iend))
397 endif
398
399
400 #ifdef IS_MPI
401 ! We only allocate new storage if we are in MPI because Ncol /= Nrow
402 if(.not.associated(groupToGtypeCol)) then
403 allocate(groupToGtypeCol(jend))
404 else
405 deallocate(groupToGtypeCol)
406 allocate(groupToGtypeCol(jend))
407 end if
408
409 if(.not.associated(groupMaxCutoffCol)) then
410 allocate(groupMaxCutoffCol(jend))
411 else
412 deallocate(groupMaxCutoffCol)
413 allocate(groupMaxCutoffCol(jend))
414 end if
415 if(.not.associated(gtypeMaxCutoffCol)) then
416 allocate(gtypeMaxCutoffCol(jend))
417 else
418 deallocate(gtypeMaxCutoffCol)
419 allocate(gtypeMaxCutoffCol(jend))
420 end if
421
422 groupMaxCutoffCol = 0.0_dp
423 gtypeMaxCutoffCol = 0.0_dp
424
425 #endif
426 groupMaxCutoffRow = 0.0_dp
427 gtypeMaxCutoffRow = 0.0_dp
428
429
430 !! first we do a single loop over the cutoff groups to find the
431 !! largest cutoff for any atypes present in this group. We also
432 !! create gtypes at this point.
433
434 tol = 1.0e-6_dp
435 nGroupTypesRow = 0
436 nGroupTypesCol = 0
437 do i = istart, iend
438 n_in_i = groupStartRow(i+1) - groupStartRow(i)
439 groupMaxCutoffRow(i) = 0.0_dp
440 do ia = groupStartRow(i), groupStartRow(i+1)-1
441 atom1 = groupListRow(ia)
442 #ifdef IS_MPI
443 me_i = atid_row(atom1)
444 #else
445 me_i = atid(atom1)
446 #endif
447 if (atypeMaxCutoff(me_i).gt.groupMaxCutoffRow(i)) then
448 groupMaxCutoffRow(i)=atypeMaxCutoff(me_i)
449 endif
450 enddo
451 if (nGroupTypesRow.eq.0) then
452 nGroupTypesRow = nGroupTypesRow + 1
453 gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i)
454 groupToGtypeRow(i) = nGroupTypesRow
455 else
456 GtypeFound = .false.
457 do g = 1, nGroupTypesRow
458 if ( abs(groupMaxCutoffRow(i) - gtypeMaxCutoffRow(g)).lt.tol) then
459 groupToGtypeRow(i) = g
460 GtypeFound = .true.
461 endif
462 enddo
463 if (.not.GtypeFound) then
464 nGroupTypesRow = nGroupTypesRow + 1
465 gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i)
466 groupToGtypeRow(i) = nGroupTypesRow
467 endif
468 endif
469 enddo
470
471 #ifdef IS_MPI
472 do j = jstart, jend
473 n_in_j = groupStartCol(j+1) - groupStartCol(j)
474 groupMaxCutoffCol(j) = 0.0_dp
475 do ja = groupStartCol(j), groupStartCol(j+1)-1
476 atom1 = groupListCol(ja)
477
478 me_j = atid_col(atom1)
479
480 if (atypeMaxCutoff(me_j).gt.groupMaxCutoffCol(j)) then
481 groupMaxCutoffCol(j)=atypeMaxCutoff(me_j)
482 endif
483 enddo
484
485 if (nGroupTypesCol.eq.0) then
486 nGroupTypesCol = nGroupTypesCol + 1
487 gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j)
488 groupToGtypeCol(j) = nGroupTypesCol
489 else
490 GtypeFound = .false.
491 do g = 1, nGroupTypesCol
492 if ( abs(groupMaxCutoffCol(j) - gtypeMaxCutoffCol(g)).lt.tol) then
493 groupToGtypeCol(j) = g
494 GtypeFound = .true.
495 endif
496 enddo
497 if (.not.GtypeFound) then
498 nGroupTypesCol = nGroupTypesCol + 1
499 gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j)
500 groupToGtypeCol(j) = nGroupTypesCol
501 endif
502 endif
503 enddo
504
505 #else
506 ! Set pointers to information we just found
507 nGroupTypesCol = nGroupTypesRow
508 groupToGtypeCol => groupToGtypeRow
509 gtypeMaxCutoffCol => gtypeMaxCutoffRow
510 groupMaxCutoffCol => groupMaxCutoffRow
511 #endif
512
513 !! allocate the gtypeCutoffMap here.
514 allocate(gtypeCutoffMap(nGroupTypesRow,nGroupTypesCol))
515 !! then we do a double loop over all the group TYPES to find the cutoff
516 !! map between groups of two types
517 tradRcut = max(maxval(gtypeMaxCutoffRow),maxval(gtypeMaxCutoffCol))
518
519 do i = 1, nGroupTypesRow
520 do j = 1, nGroupTypesCol
521
522 select case(cutoffPolicy)
523 case(TRADITIONAL_CUTOFF_POLICY)
524 thisRcut = tradRcut
525 case(MIX_CUTOFF_POLICY)
526 thisRcut = 0.5_dp * (gtypeMaxCutoffRow(i) + gtypeMaxCutoffCol(j))
527 case(MAX_CUTOFF_POLICY)
528 thisRcut = max(gtypeMaxCutoffRow(i), gtypeMaxCutoffCol(j))
529 case default
530 call handleError("createGtypeCutoffMap", "Unknown Cutoff Policy")
531 return
532 end select
533 gtypeCutoffMap(i,j)%rcut = thisRcut
534
535 if (thisRcut.gt.largestRcut) largestRcut = thisRcut
536
537 gtypeCutoffMap(i,j)%rcutsq = thisRcut*thisRcut
538
539 if (.not.haveSkinThickness) then
540 skinThickness = 1.0_dp
541 endif
542
543 gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skinThickness)**2
544
545 ! sanity check
546
547 if (haveDefaultCutoffs) then
548 if (abs(gtypeCutoffMap(i,j)%rcut - defaultRcut).gt.0.0001) then
549 call handleError("createGtypeCutoffMap", "user-specified rCut does not match computed group Cutoff")
550 endif
551 endif
552 enddo
553 enddo
554
555 if(allocated(gtypeMaxCutoffRow)) deallocate(gtypeMaxCutoffRow)
556 if(allocated(groupMaxCutoffRow)) deallocate(groupMaxCutoffRow)
557 if(allocated(atypeMaxCutoff)) deallocate(atypeMaxCutoff)
558 #ifdef IS_MPI
559 if(associated(groupMaxCutoffCol)) deallocate(groupMaxCutoffCol)
560 if(associated(gtypeMaxCutoffCol)) deallocate(gtypeMaxCutoffCol)
561 #endif
562 groupMaxCutoffCol => null()
563 gtypeMaxCutoffCol => null()
564
565 haveGtypeCutoffMap = .true.
566 end subroutine createGtypeCutoffMap
567
568 subroutine setCutoffs(defRcut, defRsw, defSP, defSF)
569
570 real(kind=dp),intent(in) :: defRcut, defRsw
571 integer, intent(in) :: defSP, defSF
572 character(len = statusMsgSize) :: errMsg
573 integer :: localError
574
575 defaultRcut = defRcut
576 defaultRsw = defRsw
577
578 if (defSP .ne. 0) then
579 defaultDoShiftPot = .true.
580 else
581 defaultDoShiftPot = .false.
582 endif
583 if (defSF .ne. 0) then
584 defaultDoShiftFrc = .true.
585 else
586 defaultDoShiftFrc = .false.
587 endif
588
589 if (abs(defaultRcut-defaultRsw) .lt. 0.0001) then
590 if (defaultDoShiftFrc) then
591 write(errMsg, *) &
592 'cutoffRadius and switchingRadius are set to the', newline &
593 // tab, 'same value. OpenMD will use shifted force', newline &
594 // tab, 'potentials instead of switching functions.'
595
596 call handleInfo("setCutoffs", errMsg)
597 else
598 write(errMsg, *) &
599 'cutoffRadius and switchingRadius are set to the', newline &
600 // tab, 'same value. OpenMD will use shifted', newline &
601 // tab, 'potentials instead of switching functions.'
602
603 call handleInfo("setCutoffs", errMsg)
604
605 defaultDoShiftPot = .true.
606 endif
607
608 endif
609
610 localError = 0
611 call setLJDefaultCutoff( defaultRcut, defaultDoShiftPot, &
612 defaultDoShiftFrc )
613 call setElectrostaticCutoffRadius( defaultRcut, defaultRsw )
614 call setCutoffEAM( defaultRcut )
615 call setCutoffSC( defaultRcut )
616 call setMnMDefaultCutoff( defaultRcut, defaultDoShiftPot, &
617 defaultDoShiftFrc )
618 call set_switch(defaultRsw, defaultRcut)
619 call setHmatDangerousRcutValue(defaultRcut)
620
621 haveDefaultCutoffs = .true.
622 haveGtypeCutoffMap = .false.
623
624 end subroutine setCutoffs
625
626 subroutine cWasLame()
627
628 VisitCutoffsAfterComputing = .true.
629 return
630
631 end subroutine cWasLame
632
633 subroutine setCutoffPolicy(cutPolicy)
634
635 integer, intent(in) :: cutPolicy
636
637 cutoffPolicy = cutPolicy
638 haveCutoffPolicy = .true.
639 haveGtypeCutoffMap = .false.
640
641 end subroutine setCutoffPolicy
642
643 subroutine setBoxDipole()
644
645 do_box_dipole = .true.
646
647 end subroutine setBoxDipole
648
649 subroutine getBoxDipole( box_dipole )
650
651 real(kind=dp), intent(inout), dimension(3) :: box_dipole
652
653 box_dipole = boxDipole
654
655 end subroutine getBoxDipole
656
657 subroutine setElectrostaticMethod( thisESM )
658
659 integer, intent(in) :: thisESM
660
661 electrostaticSummationMethod = thisESM
662 haveElectrostaticSummationMethod = .true.
663
664 end subroutine setElectrostaticMethod
665
666 subroutine setSkinThickness( thisSkin )
667
668 real(kind=dp), intent(in) :: thisSkin
669
670 skinThickness = thisSkin
671 haveSkinThickness = .true.
672 haveGtypeCutoffMap = .false.
673
674 end subroutine setSkinThickness
675
676 subroutine setSimVariables()
677 SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms()
678 SIM_uses_EAM = SimUsesEAM()
679 SIM_requires_postpair_calc = SimRequiresPostpairCalc()
680 SIM_requires_prepair_calc = SimRequiresPrepairCalc()
681 SIM_uses_PBC = SimUsesPBC()
682 SIM_uses_SC = SimUsesSC()
683 SIM_uses_AtomicVirial = SimUsesAtomicVirial()
684
685 haveSIMvariables = .true.
686
687 return
688 end subroutine setSimVariables
689
690 subroutine doReadyCheck(error)
691 integer, intent(out) :: error
692 integer :: myStatus
693
694 error = 0
695
696 if (.not. haveInteractionHash) then
697 call createInteractionHash()
698 endif
699
700 if (.not. haveGtypeCutoffMap) then
701 call createGtypeCutoffMap()
702 endif
703
704 if (VisitCutoffsAfterComputing) then
705 call set_switch(largestRcut, largestRcut)
706 call setHmatDangerousRcutValue(largestRcut)
707 call setCutoffEAM(largestRcut)
708 call setCutoffSC(largestRcut)
709 VisitCutoffsAfterComputing = .false.
710 endif
711
712 if (.not. haveSIMvariables) then
713 call setSimVariables()
714 endif
715
716 if (.not. haveNeighborList) then
717 write(default_error, *) 'neighbor list has not been initialized in doForces!'
718 error = -1
719 return
720 end if
721
722 if (.not. haveSaneForceField) then
723 write(default_error, *) 'Force Field is not sane in doForces!'
724 error = -1
725 return
726 end if
727
728 #ifdef IS_MPI
729 if (.not. isMPISimSet()) then
730 write(default_error,*) "ERROR: mpiSimulation has not been initialized!"
731 error = -1
732 return
733 endif
734 #endif
735 return
736 end subroutine doReadyCheck
737
738
739 subroutine init_FF(thisStat)
740
741 integer, intent(out) :: thisStat
742 integer :: my_status, nMatches
743 integer, pointer :: MatchList(:) => null()
744
745 !! assume things are copacetic, unless they aren't
746 thisStat = 0
747
748 !! init_FF is called *after* all of the atom types have been
749 !! defined in atype_module using the new_atype subroutine.
750 !!
751 !! this will scan through the known atypes and figure out what
752 !! interactions are used by the force field.
753
754 FF_uses_DirectionalAtoms = .false.
755 FF_uses_Dipoles = .false.
756 FF_uses_GayBerne = .false.
757 FF_uses_EAM = .false.
758 FF_uses_SC = .false.
759
760 call getMatchingElementList(atypes, "is_Directional", .true., &
761 nMatches, MatchList)
762 if (nMatches .gt. 0) FF_uses_DirectionalAtoms = .true.
763
764 call getMatchingElementList(atypes, "is_Dipole", .true., &
765 nMatches, MatchList)
766 if (nMatches .gt. 0) FF_uses_Dipoles = .true.
767
768 call getMatchingElementList(atypes, "is_GayBerne", .true., &
769 nMatches, MatchList)
770 if (nMatches .gt. 0) FF_uses_GayBerne = .true.
771
772 call getMatchingElementList(atypes, "is_EAM", .true., nMatches, MatchList)
773 if (nMatches .gt. 0) FF_uses_EAM = .true.
774
775 call getMatchingElementList(atypes, "is_SC", .true., nMatches, MatchList)
776 if (nMatches .gt. 0) FF_uses_SC = .true.
777
778
779 haveSaneForceField = .true.
780
781
782 if (.not. haveNeighborList) then
783 !! Create neighbor lists
784 call expandNeighborList(nLocal, my_status)
785 if (my_Status /= 0) then
786 write(default_error,*) "SimSetup: ExpandNeighborList returned error."
787 thisStat = -1
788 return
789 endif
790 haveNeighborList = .true.
791 endif
792
793 end subroutine init_FF
794
795
796 !! Does force loop over i,j pairs. Calls do_pair to calculates forces.
797 !------------------------------------------------------------->
798 subroutine do_force_loop(q, q_group, A, eFrame, f, t, tau, pot, particle_pot, &
799 error)
800 !! Position array provided by C, dimensioned by getNlocal
801 real ( kind = dp ), dimension(3, nLocal) :: q
802 !! molecular center-of-mass position array
803 real ( kind = dp ), dimension(3, nGroups) :: q_group
804 !! Rotation Matrix for each long range particle in simulation.
805 real( kind = dp), dimension(9, nLocal) :: A
806 !! Unit vectors for dipoles (lab frame)
807 real( kind = dp ), dimension(9,nLocal) :: eFrame
808 !! Force array provided by C, dimensioned by getNlocal
809 real ( kind = dp ), dimension(3,nLocal) :: f
810 !! Torsion array provided by C, dimensioned by getNlocal
811 real( kind = dp ), dimension(3,nLocal) :: t
812
813 !! Stress Tensor
814 real( kind = dp), dimension(9) :: tau
815 real ( kind = dp ),dimension(LR_POT_TYPES) :: pot
816 real( kind = dp ), dimension(nLocal) :: particle_pot
817
818 logical :: in_switching_region
819 #ifdef IS_MPI
820 real( kind = DP ), dimension(LR_POT_TYPES) :: pot_local
821 integer :: nAtomsInRow
822 integer :: nAtomsInCol
823 integer :: nprocs
824 integer :: nGroupsInRow
825 integer :: nGroupsInCol
826 #endif
827 integer :: natoms
828 logical :: update_nlist
829 integer :: i, j, jstart, jend, jnab
830 integer :: istart, iend
831 integer :: ia, jb, atom1, atom2
832 integer :: nlist
833 real( kind = DP ) :: ratmsq, rgrpsq, rgrp, rag, vpair, vij
834 real( kind = DP ) :: sw, dswdr, swderiv, mf
835 real( kind = DP ) :: rVal
836 real(kind=dp),dimension(3) :: d_atm, d_grp, fpair, fij, fg, dag
837 real(kind=dp) :: rfpot, mu_i
838 real(kind=dp):: rCut
839 integer :: me_i, me_j, n_in_i, n_in_j, iG, j1
840 logical :: is_dp_i
841 integer :: neighborListSize
842 integer :: listerror, error
843 integer :: localError
844 integer :: propPack_i, propPack_j
845 integer :: loopStart, loopEnd, loop
846 integer :: iHash, jHash
847 integer :: i1, topoDist
848
849 !! the variables for the box dipole moment
850 #ifdef IS_MPI
851 integer :: pChgCount_local
852 integer :: nChgCount_local
853 real(kind=dp) :: pChg_local
854 real(kind=dp) :: nChg_local
855 real(kind=dp), dimension(3) :: pChgPos_local
856 real(kind=dp), dimension(3) :: nChgPos_local
857 real(kind=dp), dimension(3) :: dipVec_local
858 #endif
859 integer :: pChgCount
860 integer :: nChgCount
861 real(kind=dp) :: pChg
862 real(kind=dp) :: nChg
863 real(kind=dp) :: chg_value
864 real(kind=dp), dimension(3) :: pChgPos
865 real(kind=dp), dimension(3) :: nChgPos
866 real(kind=dp), dimension(3) :: dipVec
867 real(kind=dp), dimension(3) :: chgVec
868 real(kind=dp) :: skch
869
870 !! initialize box dipole variables
871 if (do_box_dipole) then
872 #ifdef IS_MPI
873 pChg_local = 0.0_dp
874 nChg_local = 0.0_dp
875 pChgCount_local = 0
876 nChgCount_local = 0
877 do i=1, 3
878 pChgPos_local = 0.0_dp
879 nChgPos_local = 0.0_dp
880 dipVec_local = 0.0_dp
881 enddo
882 #endif
883 pChg = 0.0_dp
884 nChg = 0.0_dp
885 pChgCount = 0
886 nChgCount = 0
887 chg_value = 0.0_dp
888
889 do i=1, 3
890 pChgPos(i) = 0.0_dp
891 nChgPos(i) = 0.0_dp
892 dipVec(i) = 0.0_dp
893 chgVec(i) = 0.0_dp
894 boxDipole(i) = 0.0_dp
895 enddo
896 endif
897
898 !! initialize local variables
899
900 #ifdef IS_MPI
901 pot_local = 0.0_dp
902 nAtomsInRow = getNatomsInRow(plan_atom_row)
903 nAtomsInCol = getNatomsInCol(plan_atom_col)
904 nGroupsInRow = getNgroupsInRow(plan_group_row)
905 nGroupsInCol = getNgroupsInCol(plan_group_col)
906 #else
907 natoms = nlocal
908 #endif
909
910 call doReadyCheck(localError)
911 if ( localError .ne. 0 ) then
912 call handleError("do_force_loop", "Not Initialized")
913 error = -1
914 return
915 end if
916 call zero_work_arrays()
917
918 ! Gather all information needed by all force loops:
919
920 #ifdef IS_MPI
921
922 call gather(q, q_Row, plan_atom_row_3d)
923 call gather(q, q_Col, plan_atom_col_3d)
924
925 call gather(q_group, q_group_Row, plan_group_row_3d)
926 call gather(q_group, q_group_Col, plan_group_col_3d)
927
928 if (FF_UsesDirectionalAtoms() .and. SIM_uses_DirectionalAtoms) then
929 call gather(eFrame, eFrame_Row, plan_atom_row_rotation)
930 call gather(eFrame, eFrame_Col, plan_atom_col_rotation)
931
932 call gather(A, A_Row, plan_atom_row_rotation)
933 call gather(A, A_Col, plan_atom_col_rotation)
934 endif
935
936 #endif
937
938 !! Begin force loop timing:
939 #ifdef PROFILE
940 call cpu_time(forceTimeInitial)
941 nloops = nloops + 1
942 #endif
943
944 loopEnd = PAIR_LOOP
945 if (FF_RequiresPrepairCalc() .and. SIM_requires_prepair_calc) then
946 loopStart = PREPAIR_LOOP
947 else
948 loopStart = PAIR_LOOP
949 endif
950
951 do loop = loopStart, loopEnd
952
953 ! See if we need to update neighbor lists
954 ! (but only on the first time through):
955 if (loop .eq. loopStart) then
956 #ifdef IS_MPI
957 call checkNeighborList(nGroupsInRow, q_group_row, skinThickness, &
958 update_nlist)
959 #else
960 call checkNeighborList(nGroups, q_group, skinThickness, &
961 update_nlist)
962 #endif
963 endif
964
965 if (update_nlist) then
966 !! save current configuration and construct neighbor list
967 #ifdef IS_MPI
968 call saveNeighborList(nGroupsInRow, q_group_row)
969 #else
970 call saveNeighborList(nGroups, q_group)
971 #endif
972 neighborListSize = size(list)
973 nlist = 0
974 endif
975
976 istart = 1
977 #ifdef IS_MPI
978 iend = nGroupsInRow
979 #else
980 iend = nGroups - 1
981 #endif
982 outer: do i = istart, iend
983
984 if (update_nlist) point(i) = nlist + 1
985
986 n_in_i = groupStartRow(i+1) - groupStartRow(i)
987
988 if (update_nlist) then
989 #ifdef IS_MPI
990 jstart = 1
991 jend = nGroupsInCol
992 #else
993 jstart = i+1
994 jend = nGroups
995 #endif
996 else
997 jstart = point(i)
998 jend = point(i+1) - 1
999 ! make sure group i has neighbors
1000 if (jstart .gt. jend) cycle outer
1001 endif
1002
1003 do jnab = jstart, jend
1004 if (update_nlist) then
1005 j = jnab
1006 else
1007 j = list(jnab)
1008 endif
1009
1010 #ifdef IS_MPI
1011 me_j = atid_col(j)
1012 call get_interatomic_vector(q_group_Row(:,i), &
1013 q_group_Col(:,j), d_grp, rgrpsq)
1014 #else
1015 me_j = atid(j)
1016 call get_interatomic_vector(q_group(:,i), &
1017 q_group(:,j), d_grp, rgrpsq)
1018 #endif
1019
1020 if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rListsq) then
1021 if (update_nlist) then
1022 nlist = nlist + 1
1023
1024 if (nlist > neighborListSize) then
1025 #ifdef IS_MPI
1026 call expandNeighborList(nGroupsInRow, listerror)
1027 #else
1028 call expandNeighborList(nGroups, listerror)
1029 #endif
1030 if (listerror /= 0) then
1031 error = -1
1032 write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded."
1033 return
1034 end if
1035 neighborListSize = size(list)
1036 endif
1037
1038 list(nlist) = j
1039 endif
1040
1041 if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCutsq) then
1042
1043 rCut = gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCut
1044 if (loop .eq. PAIR_LOOP) then
1045 vij = 0.0_dp
1046 fij(1) = 0.0_dp
1047 fij(2) = 0.0_dp
1048 fij(3) = 0.0_dp
1049 endif
1050
1051 call get_switch(rgrpsq, sw, dswdr,rgrp, in_switching_region)
1052
1053 n_in_j = groupStartCol(j+1) - groupStartCol(j)
1054
1055 do ia = groupStartRow(i), groupStartRow(i+1)-1
1056
1057 atom1 = groupListRow(ia)
1058
1059 inner: do jb = groupStartCol(j), groupStartCol(j+1)-1
1060
1061 atom2 = groupListCol(jb)
1062
1063 if (skipThisPair(atom1, atom2)) cycle inner
1064
1065 if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then
1066 d_atm(1) = d_grp(1)
1067 d_atm(2) = d_grp(2)
1068 d_atm(3) = d_grp(3)
1069 ratmsq = rgrpsq
1070 else
1071 #ifdef IS_MPI
1072 call get_interatomic_vector(q_Row(:,atom1), &
1073 q_Col(:,atom2), d_atm, ratmsq)
1074 #else
1075 call get_interatomic_vector(q(:,atom1), &
1076 q(:,atom2), d_atm, ratmsq)
1077 #endif
1078 endif
1079
1080 topoDist = getTopoDistance(atom1, atom2)
1081
1082 if (loop .eq. PREPAIR_LOOP) then
1083 #ifdef IS_MPI
1084 call do_prepair(atom1, atom2, ratmsq, d_atm, sw, &
1085 rgrpsq, d_grp, rCut, &
1086 eFrame, A, f, t, pot_local)
1087 #else
1088 call do_prepair(atom1, atom2, ratmsq, d_atm, sw, &
1089 rgrpsq, d_grp, rCut, &
1090 eFrame, A, f, t, pot)
1091 #endif
1092 else
1093 #ifdef IS_MPI
1094 call do_pair(atom1, atom2, ratmsq, d_atm, sw, &
1095 eFrame, A, f, t, pot_local, particle_pot, vpair, &
1096 fpair, d_grp, rgrp, rCut, topoDist)
1097 ! particle_pot will be accumulated from row & column
1098 ! arrays later
1099 #else
1100 call do_pair(atom1, atom2, ratmsq, d_atm, sw, &
1101 eFrame, A, f, t, pot, particle_pot, vpair, &
1102 fpair, d_grp, rgrp, rCut, topoDist)
1103 #endif
1104 vij = vij + vpair
1105 fij(1) = fij(1) + fpair(1)
1106 fij(2) = fij(2) + fpair(2)
1107 fij(3) = fij(3) + fpair(3)
1108 call add_stress_tensor(d_atm, fpair, tau)
1109 endif
1110 enddo inner
1111 enddo
1112
1113 if (loop .eq. PAIR_LOOP) then
1114 if (in_switching_region) then
1115 swderiv = vij*dswdr/rgrp
1116 fg = swderiv*d_grp
1117
1118 fij(1) = fij(1) + fg(1)
1119 fij(2) = fij(2) + fg(2)
1120 fij(3) = fij(3) + fg(3)
1121
1122 if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then
1123 call add_stress_tensor(d_atm, fg, tau)
1124 endif
1125
1126 do ia=groupStartRow(i), groupStartRow(i+1)-1
1127 atom1=groupListRow(ia)
1128 mf = mfactRow(atom1)
1129 ! fg is the force on atom ia due to cutoff group's
1130 ! presence in switching region
1131 fg = swderiv*d_grp*mf
1132 #ifdef IS_MPI
1133 f_Row(1,atom1) = f_Row(1,atom1) + fg(1)
1134 f_Row(2,atom1) = f_Row(2,atom1) + fg(2)
1135 f_Row(3,atom1) = f_Row(3,atom1) + fg(3)
1136 #else
1137 f(1,atom1) = f(1,atom1) + fg(1)
1138 f(2,atom1) = f(2,atom1) + fg(2)
1139 f(3,atom1) = f(3,atom1) + fg(3)
1140 #endif
1141 if (n_in_i .gt. 1) then
1142 if (SIM_uses_AtomicVirial) then
1143 ! find the distance between the atom
1144 ! and the center of the cutoff group:
1145 #ifdef IS_MPI
1146 call get_interatomic_vector(q_Row(:,atom1), &
1147 q_group_Row(:,i), dag, rag)
1148 #else
1149 call get_interatomic_vector(q(:,atom1), &
1150 q_group(:,i), dag, rag)
1151 #endif
1152 call add_stress_tensor(dag,fg,tau)
1153 endif
1154 endif
1155 enddo
1156
1157 do jb=groupStartCol(j), groupStartCol(j+1)-1
1158 atom2=groupListCol(jb)
1159 mf = mfactCol(atom2)
1160 ! fg is the force on atom jb due to cutoff group's
1161 ! presence in switching region
1162 fg = -swderiv*d_grp*mf
1163 #ifdef IS_MPI
1164 f_Col(1,atom2) = f_Col(1,atom2) + fg(1)
1165 f_Col(2,atom2) = f_Col(2,atom2) + fg(2)
1166 f_Col(3,atom2) = f_Col(3,atom2) + fg(3)
1167 #else
1168 f(1,atom2) = f(1,atom2) + fg(1)
1169 f(2,atom2) = f(2,atom2) + fg(2)
1170 f(3,atom2) = f(3,atom2) + fg(3)
1171 #endif
1172 if (n_in_j .gt. 1) then
1173 if (SIM_uses_AtomicVirial) then
1174 ! find the distance between the atom
1175 ! and the center of the cutoff group:
1176 #ifdef IS_MPI
1177 call get_interatomic_vector(q_Col(:,atom2), &
1178 q_group_Col(:,j), dag, rag)
1179 #else
1180 call get_interatomic_vector(q(:,atom2), &
1181 q_group(:,j), dag, rag)
1182 #endif
1183 call add_stress_tensor(dag,fg,tau)
1184 endif
1185 endif
1186 enddo
1187 endif
1188 !if (.not.SIM_uses_AtomicVirial) then
1189 ! call add_stress_tensor(d_grp, fij, tau)
1190 !endif
1191 endif
1192 endif
1193 endif
1194 enddo
1195
1196 enddo outer
1197
1198 if (update_nlist) then
1199 #ifdef IS_MPI
1200 point(nGroupsInRow + 1) = nlist + 1
1201 #else
1202 point(nGroups) = nlist + 1
1203 #endif
1204 if (loop .eq. PREPAIR_LOOP) then
1205 ! we just did the neighbor list update on the first
1206 ! pass, so we don't need to do it
1207 ! again on the second pass
1208 update_nlist = .false.
1209 endif
1210 endif
1211
1212 if (loop .eq. PREPAIR_LOOP) then
1213 #ifdef IS_MPI
1214 call do_preforce(nlocal, pot_local, particle_pot)
1215 #else
1216 call do_preforce(nlocal, pot, particle_pot)
1217 #endif
1218 endif
1219
1220 enddo
1221
1222 !! Do timing
1223 #ifdef PROFILE
1224 call cpu_time(forceTimeFinal)
1225 forceTime = forceTime + forceTimeFinal - forceTimeInitial
1226 #endif
1227
1228 #ifdef IS_MPI
1229 !!distribute forces
1230
1231 f_temp = 0.0_dp
1232 call scatter(f_Row,f_temp,plan_atom_row_3d)
1233 do i = 1,nlocal
1234 f(1:3,i) = f(1:3,i) + f_temp(1:3,i)
1235 end do
1236
1237 f_temp = 0.0_dp
1238 call scatter(f_Col,f_temp,plan_atom_col_3d)
1239 do i = 1,nlocal
1240 f(1:3,i) = f(1:3,i) + f_temp(1:3,i)
1241 end do
1242
1243 if (FF_UsesDirectionalAtoms() .and. SIM_uses_DirectionalAtoms) then
1244 t_temp = 0.0_dp
1245 call scatter(t_Row,t_temp,plan_atom_row_3d)
1246 do i = 1,nlocal
1247 t(1:3,i) = t(1:3,i) + t_temp(1:3,i)
1248 end do
1249 t_temp = 0.0_dp
1250 call scatter(t_Col,t_temp,plan_atom_col_3d)
1251
1252 do i = 1,nlocal
1253 t(1:3,i) = t(1:3,i) + t_temp(1:3,i)
1254 end do
1255 endif
1256
1257 ! scatter/gather pot_row into the members of my column
1258 do i = 1,LR_POT_TYPES
1259 call scatter(pot_Row(i,:), pot_Temp(i,:), plan_atom_row)
1260 end do
1261 ! scatter/gather pot_local into all other procs
1262 ! add resultant to get total pot
1263 do i = 1, nlocal
1264 pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES) &
1265 + pot_Temp(1:LR_POT_TYPES,i)
1266 enddo
1267
1268 do i = 1,LR_POT_TYPES
1269 particle_pot(1:nlocal) = particle_pot(1:nlocal) + pot_Temp(i,1:nlocal)
1270 enddo
1271
1272 pot_Temp = 0.0_DP
1273
1274 do i = 1,LR_POT_TYPES
1275 call scatter(pot_Col(i,:), pot_Temp(i,:), plan_atom_col)
1276 end do
1277
1278 do i = 1, nlocal
1279 pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES)&
1280 + pot_Temp(1:LR_POT_TYPES,i)
1281 enddo
1282
1283 do i = 1,LR_POT_TYPES
1284 particle_pot(1:nlocal) = particle_pot(1:nlocal) + pot_Temp(i,1:nlocal)
1285 enddo
1286
1287 ppot_Temp = 0.0_DP
1288
1289 call scatter(ppot_Row(:), ppot_Temp(:), plan_atom_row)
1290 do i = 1, nlocal
1291 particle_pot(i) = particle_pot(i) + ppot_Temp(i)
1292 enddo
1293
1294 ppot_Temp = 0.0_DP
1295
1296 call scatter(ppot_Col(:), ppot_Temp(:), plan_atom_col)
1297 do i = 1, nlocal
1298 particle_pot(i) = particle_pot(i) + ppot_Temp(i)
1299 enddo
1300
1301 #endif
1302
1303 if (SIM_requires_postpair_calc) then
1304 do i = 1, nlocal
1305
1306 ! we loop only over the local atoms, so we don't need row and column
1307 ! lookups for the types
1308
1309 me_i = atid(i)
1310
1311 ! is the atom electrostatic? See if it would have an
1312 ! electrostatic interaction with itself
1313 iHash = InteractionHash(me_i,me_i)
1314
1315 if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then
1316
1317 ! loop over the excludes to accumulate charge in the
1318 ! cutoff sphere that we've left out of the normal pair loop
1319 skch = 0.0_dp
1320
1321 do i1 = 1, nSkipsForLocalAtom(i)
1322 j = skipsForLocalAtom(i, i1)
1323 me_j = atid(j)
1324 jHash = InteractionHash(me_i,me_j)
1325 if ( iand(jHash, ELECTROSTATIC_PAIR).ne.0 ) then
1326 skch = skch + getCharge(me_j)
1327 endif
1328 enddo
1329
1330 #ifdef IS_MPI
1331 call self_self(i, eFrame, skch, pot_local(ELECTROSTATIC_POT), t)
1332 #else
1333 call self_self(i, eFrame, skch, pot(ELECTROSTATIC_POT), t)
1334 #endif
1335 endif
1336
1337
1338 if (electrostaticSummationMethod.eq.REACTION_FIELD) then
1339
1340 ! loop over the excludes to accumulate RF stuff we've
1341 ! left out of the normal pair loop
1342
1343 do i1 = 1, nSkipsForLocalAtom(i)
1344 j = skipsForLocalAtom(i, i1)
1345
1346 ! prevent overcounting of the skips
1347 if (i.lt.j) then
1348 call get_interatomic_vector(q(:,i), q(:,j), d_atm, ratmsq)
1349 rVal = sqrt(ratmsq)
1350 call get_switch(ratmsq, sw, dswdr, rVal,in_switching_region)
1351 #ifdef IS_MPI
1352 call rf_self_excludes(i, j, sw, 1.0_dp, eFrame, d_atm, rVal, &
1353 vpair, pot_local(ELECTROSTATIC_POT), f, t)
1354 #else
1355 call rf_self_excludes(i, j, sw, 1.0_dp, eFrame, d_atm, rVal, &
1356 vpair, pot(ELECTROSTATIC_POT), f, t)
1357 #endif
1358 endif
1359 enddo
1360 endif
1361
1362 if (do_box_dipole) then
1363 #ifdef IS_MPI
1364 call accumulate_box_dipole(i, eFrame, q(:,i), pChg_local, &
1365 nChg_local, pChgPos_local, nChgPos_local, dipVec_local, &
1366 pChgCount_local, nChgCount_local)
1367 #else
1368 call accumulate_box_dipole(i, eFrame, q(:,i), pChg, nChg, &
1369 pChgPos, nChgPos, dipVec, pChgCount, nChgCount)
1370 #endif
1371 endif
1372 enddo
1373 endif
1374
1375 #ifdef IS_MPI
1376 #ifdef SINGLE_PRECISION
1377 call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_real,mpi_sum, &
1378 mpi_comm_world,mpi_err)
1379 #else
1380 call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_double_precision, &
1381 mpi_sum, mpi_comm_world,mpi_err)
1382 #endif
1383
1384 if (do_box_dipole) then
1385
1386 #ifdef SINGLE_PRECISION
1387 call mpi_allreduce(pChg_local, pChg, 1, mpi_real, mpi_sum, &
1388 mpi_comm_world, mpi_err)
1389 call mpi_allreduce(nChg_local, nChg, 1, mpi_real, mpi_sum, &
1390 mpi_comm_world, mpi_err)
1391 call mpi_allreduce(pChgCount_local, pChgCount, 1, mpi_integer, mpi_sum,&
1392 mpi_comm_world, mpi_err)
1393 call mpi_allreduce(nChgCount_local, nChgCount, 1, mpi_integer, mpi_sum,&
1394 mpi_comm_world, mpi_err)
1395 call mpi_allreduce(pChgPos_local, pChgPos, 3, mpi_real, mpi_sum, &
1396 mpi_comm_world, mpi_err)
1397 call mpi_allreduce(nChgPos_local, nChgPos, 3, mpi_real, mpi_sum, &
1398 mpi_comm_world, mpi_err)
1399 call mpi_allreduce(dipVec_local, dipVec, 3, mpi_real, mpi_sum, &
1400 mpi_comm_world, mpi_err)
1401 #else
1402 call mpi_allreduce(pChg_local, pChg, 1, mpi_double_precision, mpi_sum, &
1403 mpi_comm_world, mpi_err)
1404 call mpi_allreduce(nChg_local, nChg, 1, mpi_double_precision, mpi_sum, &
1405 mpi_comm_world, mpi_err)
1406 call mpi_allreduce(pChgCount_local, pChgCount, 1, mpi_integer,&
1407 mpi_sum, mpi_comm_world, mpi_err)
1408 call mpi_allreduce(nChgCount_local, nChgCount, 1, mpi_integer,&
1409 mpi_sum, mpi_comm_world, mpi_err)
1410 call mpi_allreduce(pChgPos_local, pChgPos, 3, mpi_double_precision, &
1411 mpi_sum, mpi_comm_world, mpi_err)
1412 call mpi_allreduce(nChgPos_local, nChgPos, 3, mpi_double_precision, &
1413 mpi_sum, mpi_comm_world, mpi_err)
1414 call mpi_allreduce(dipVec_local, dipVec, 3, mpi_double_precision, &
1415 mpi_sum, mpi_comm_world, mpi_err)
1416 #endif
1417
1418 endif
1419
1420 #endif
1421
1422 if (do_box_dipole) then
1423 ! first load the accumulated dipole moment (if dipoles were present)
1424 boxDipole(1) = dipVec(1)
1425 boxDipole(2) = dipVec(2)
1426 boxDipole(3) = dipVec(3)
1427
1428 ! now include the dipole moment due to charges
1429 ! use the lesser of the positive and negative charge totals
1430 if (nChg .le. pChg) then
1431 chg_value = nChg
1432 else
1433 chg_value = pChg
1434 endif
1435
1436 ! find the average positions
1437 if (pChgCount .gt. 0 .and. nChgCount .gt. 0) then
1438 pChgPos = pChgPos / pChgCount
1439 nChgPos = nChgPos / nChgCount
1440 endif
1441
1442 ! dipole is from the negative to the positive (physics notation)
1443 chgVec(1) = pChgPos(1) - nChgPos(1)
1444 chgVec(2) = pChgPos(2) - nChgPos(2)
1445 chgVec(3) = pChgPos(3) - nChgPos(3)
1446
1447 boxDipole(1) = boxDipole(1) + chgVec(1) * chg_value
1448 boxDipole(2) = boxDipole(2) + chgVec(2) * chg_value
1449 boxDipole(3) = boxDipole(3) + chgVec(3) * chg_value
1450
1451 endif
1452
1453 end subroutine do_force_loop
1454
1455 subroutine do_pair(i, j, rijsq, d, sw, &
1456 eFrame, A, f, t, pot, particle_pot, vpair, &
1457 fpair, d_grp, r_grp, rCut, topoDist)
1458
1459 real( kind = dp ) :: vpair, sw
1460 real( kind = dp ), dimension(LR_POT_TYPES) :: pot
1461 real( kind = dp ), dimension(nLocal) :: particle_pot
1462 real( kind = dp ), dimension(3) :: fpair
1463 real( kind = dp ), dimension(nLocal) :: mfact
1464 real( kind = dp ), dimension(9,nLocal) :: eFrame
1465 real( kind = dp ), dimension(9,nLocal) :: A
1466 real( kind = dp ), dimension(3,nLocal) :: f
1467 real( kind = dp ), dimension(3,nLocal) :: t
1468
1469 integer, intent(in) :: i, j
1470 real ( kind = dp ), intent(inout) :: rijsq
1471 real ( kind = dp ), intent(inout) :: r_grp
1472 real ( kind = dp ), intent(inout) :: d(3)
1473 real ( kind = dp ), intent(inout) :: d_grp(3)
1474 real ( kind = dp ), intent(inout) :: rCut
1475 integer, intent(inout) :: topoDist
1476 real ( kind = dp ) :: r, pair_pot, vdwMult, electroMult
1477 real ( kind = dp ) :: a_k, b_k, c_k, d_k, dx
1478
1479 real( kind = dp), dimension(3) :: f1, t1, t2
1480 real( kind = dp), dimension(9) :: A1, A2, eF1, eF2
1481 real( kind = dp) :: dfrhodrho_i, dfrhodrho_j
1482 real( kind = dp) :: rho_i, rho_j
1483 real( kind = dp) :: fshift_i, fshift_j
1484 real( kind = dp) :: p_vdw, p_elect, p_hb, p_met
1485 integer :: atid_i, atid_j, id1, id2, idx
1486 integer :: k
1487
1488 integer :: iHash
1489
1490 r = sqrt(rijsq)
1491
1492 vpair = 0.0_dp
1493 fpair(1:3) = 0.0_dp
1494
1495 p_vdw = 0.0
1496 p_elect = 0.0
1497 p_hb = 0.0
1498 p_met = 0.0
1499
1500 f1(1:3) = 0.0
1501 t1(1:3) = 0.0
1502 t2(1:3) = 0.0
1503
1504 #ifdef IS_MPI
1505 atid_i = atid_row(i)
1506 atid_j = atid_col(j)
1507
1508 do idx = 1, 9
1509 A1(idx) = A_Row(idx, i)
1510 A2(idx) = A_Col(idx, j)
1511 eF1(idx) = eFrame_Row(idx, i)
1512 eF2(idx) = eFrame_Col(idx, j)
1513 enddo
1514
1515 #else
1516 atid_i = atid(i)
1517 atid_j = atid(j)
1518 do idx = 1, 9
1519 A1(idx) = A(idx, i)
1520 A2(idx) = A(idx, j)
1521 eF1(idx) = eFrame(idx, i)
1522 eF2(idx) = eFrame(idx, j)
1523 enddo
1524
1525 #endif
1526
1527
1528 iHash = InteractionHash(atid_i, atid_j)
1529
1530 !! For the metallic potentials, we need to pass dF[rho]/drho since
1531 !! the pair calculation routines no longer are aware of parallel.
1532
1533 if ( (iand(iHash, EAM_PAIR).ne.0) .or. (iand(iHash, SC_PAIR).ne.0) ) then
1534 #ifdef IS_MPI
1535 dfrhodrho_i = dfrhodrho_row(i)
1536 dfrhodrho_j = dfrhodrho_col(j)
1537 rho_i = rho_row(i)
1538 rho_j = rho_col(j)
1539 #else
1540 dfrhodrho_i = dfrhodrho(i)
1541 dfrhodrho_j = dfrhodrho(j)
1542 rho_i = rho(i)
1543 rho_j = rho(j)
1544 #endif
1545 end if
1546
1547 vdwMult = vdwScale(topoDist)
1548 electroMult = electrostaticScale(topoDist)
1549
1550 if ( iand(iHash, LJ_PAIR).ne.0 ) then
1551 call do_lj_pair(atid_i, atid_j, d, r, rijsq, rcut, sw, vdwMult, vpair, fpair, &
1552 p_vdw, f1)
1553 endif
1554
1555 if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then
1556 call doElectrostaticPair(atid_i, atid_j, d, r, rijsq, rcut, sw, electroMult, &
1557 vpair, fpair, p_elect, eF1, eF2, f1, t1, t2)
1558 endif
1559
1560 if ( iand(iHash, STICKY_PAIR).ne.0 ) then
1561 call do_sticky_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, &
1562 p_hb, A1, A2, f1, t1, t2)
1563 endif
1564
1565 if ( iand(iHash, STICKYPOWER_PAIR).ne.0 ) then
1566 call do_sticky_power_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, &
1567 p_hb, A1, A2, f1, t1, t2)
1568 endif
1569
1570 if ( iand(iHash, GAYBERNE_PAIR).ne.0 ) then
1571 call do_gb_pair(atid_i, atid_j, d, r, rijsq, sw, vdwMult, vpair, fpair, &
1572 p_vdw, A1, A2, f1, t1, t2)
1573 endif
1574
1575 if ( iand(iHash, GAYBERNE_LJ).ne.0 ) then
1576 call do_gb_pair(atid_i, atid_j, d, r, rijsq, sw, vdwMult, vpair, fpair, &
1577 p_vdw, A1, A2, f1, t1, t2)
1578 endif
1579
1580 if ( iand(iHash, SHAPE_PAIR).ne.0 ) then
1581 call do_shape_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, &
1582 p_vdw, A1, A2, f1, t1, t2)
1583 endif
1584
1585 if ( iand(iHash, SHAPE_LJ).ne.0 ) then
1586 call do_shape_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, &
1587 p_vdw, A1, A2, f1, t1, t2)
1588 endif
1589
1590 if ( iand(iHash, EAM_PAIR).ne.0 ) then
1591 call do_eam_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, &
1592 fpair, p_met, f1, rho_i, rho_j, dfrhodrho_i, dfrhodrho_j, fshift_i,fshift_j)
1593 endif
1594
1595 if ( iand(iHash, SC_PAIR).ne.0 ) then
1596 call do_SC_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, &
1597 fpair, p_met, f1, rho_i, rho_j, dfrhodrho_i, dfrhodrho_j, fshift_i, fshift_j)
1598 endif
1599
1600 if ( iand(iHash, MNM_PAIR).ne.0 ) then
1601 call do_mnm_pair(atid_i, atid_j, d, r, rijsq, rcut, sw, vdwMult, vpair, fpair, &
1602 p_vdw, A1, A2, f1, t1, t2)
1603 endif
1604
1605
1606 #ifdef IS_MPI
1607 id1 = AtomRowToGlobal(i)
1608 id2 = AtomColToGlobal(j)
1609
1610 pot_row(VDW_POT,i) = pot_row(VDW_POT,i) + 0.5*p_vdw
1611 pot_col(VDW_POT,j) = pot_col(VDW_POT,j) + 0.5*p_vdw
1612 pot_row(ELECTROSTATIC_POT,i) = pot_row(ELECTROSTATIC_POT,i) + 0.5*p_elect
1613 pot_col(ELECTROSTATIC_POT,j) = pot_col(ELECTROSTATIC_POT,j) + 0.5*p_elect
1614 pot_row(HB_POT,i) = pot_row(HB_POT,i) + 0.5*p_hb
1615 pot_col(HB_POT,j) = pot_col(HB_POT,j) + 0.5*p_hb
1616 pot_Row(METALLIC_POT,i) = pot_Row(METALLIC_POT,i) + 0.5*p_met
1617 pot_Col(METALLIC_POT,j) = pot_Col(METALLIC_POT,j) + 0.5*p_met
1618
1619 do idx = 1, 3
1620 f_Row(idx,i) = f_Row(idx,i) + f1(idx)
1621 f_Col(idx,j) = f_Col(idx,j) - f1(idx)
1622
1623 t_Row(idx,i) = t_Row(idx,i) + t1(idx)
1624 t_Col(idx,j) = t_Col(idx,j) + t2(idx)
1625 enddo
1626 ! particle_pot is the difference between the full potential
1627 ! and the full potential without the presence of a particular
1628 ! particle (atom1).
1629 !
1630 ! This reduces the density at other particle locations, so
1631 ! we need to recompute the density at atom2 assuming atom1
1632 ! didn't contribute. This then requires recomputing the
1633 ! density functional for atom2 as well.
1634 !
1635 ! Most of the particle_pot heavy lifting comes from the
1636 ! pair interaction, and will be handled by vpair. Parallel version.
1637
1638 if ( (iand(iHash, EAM_PAIR).ne.0) .or. (iand(iHash, SC_PAIR).ne.0) ) then
1639 ppot_row(i) = ppot_row(i) - frho_row(j) + fshift_j
1640 ppot_col(j) = ppot_col(j) - frho_col(i) + fshift_i
1641 end if
1642
1643 #else
1644 id1 = i
1645 id2 = j
1646
1647 pot(VDW_POT) = pot(VDW_POT) + p_vdw
1648 pot(ELECTROSTATIC_POT) = pot(ELECTROSTATIC_POT) + p_elect
1649 pot(HB_POT) = pot(HB_POT) + p_hb
1650 pot(METALLIC_POT) = pot(METALLIC_POT) + p_met
1651
1652 do idx = 1, 3
1653 f(idx,i) = f(idx,i) + f1(idx)
1654 f(idx,j) = f(idx,j) - f1(idx)
1655
1656 t(idx,i) = t(idx,i) + t1(idx)
1657 t(idx,j) = t(idx,j) + t2(idx)
1658 enddo
1659 ! particle_pot is the difference between the full potential
1660 ! and the full potential without the presence of a particular
1661 ! particle (atom1).
1662 !
1663 ! This reduces the density at other particle locations, so
1664 ! we need to recompute the density at atom2 assuming atom1
1665 ! didn't contribute. This then requires recomputing the
1666 ! density functional for atom2 as well.
1667 !
1668 ! Most of the particle_pot heavy lifting comes from the
1669 ! pair interaction, and will be handled by vpair. NonParallel version.
1670
1671 if ( (iand(iHash, EAM_PAIR).ne.0) .or. (iand(iHash, SC_PAIR).ne.0) ) then
1672 particle_pot(i) = particle_pot(i) - frho(j) + fshift_j
1673 particle_pot(j) = particle_pot(j) - frho(i) + fshift_i
1674 end if
1675
1676
1677 #endif
1678
1679 if (molMembershipList(id1) .ne. molMembershipList(id2)) then
1680
1681 fpair(1) = fpair(1) + f1(1)
1682 fpair(2) = fpair(2) + f1(2)
1683 fpair(3) = fpair(3) + f1(3)
1684
1685 endif
1686
1687
1688 !!$
1689 !!$ particle_pot(i) = particle_pot(i) + vpair*sw
1690 !!$ particle_pot(j) = particle_pot(j) + vpair*sw
1691
1692 end subroutine do_pair
1693
1694 subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, rCut, &
1695 eFrame, A, f, t, pot)
1696
1697 real( kind = dp ) :: sw
1698 real( kind = dp ), dimension(LR_POT_TYPES) :: pot
1699 real( kind = dp ), dimension(9,nLocal) :: eFrame
1700 real (kind=dp), dimension(9,nLocal) :: A
1701 real (kind=dp), dimension(3,nLocal) :: f
1702 real (kind=dp), dimension(3,nLocal) :: t
1703
1704 integer, intent(in) :: i, j
1705 real ( kind = dp ), intent(inout) :: rijsq, rcijsq, rCut
1706 real ( kind = dp ) :: r, rc
1707 real ( kind = dp ), intent(inout) :: d(3), dc(3)
1708 real ( kind = dp ) :: rho_i_at_j, rho_j_at_i
1709 integer :: atid_i, atid_j, iHash
1710
1711 r = sqrt(rijsq)
1712
1713 #ifdef IS_MPI
1714 atid_i = atid_row(i)
1715 atid_j = atid_col(j)
1716 #else
1717 atid_i = atid(i)
1718 atid_j = atid(j)
1719 #endif
1720 rho_i_at_j = 0.0_dp
1721 rho_j_at_i = 0.0_dp
1722
1723 iHash = InteractionHash(atid_i, atid_j)
1724
1725 if ( iand(iHash, EAM_PAIR).ne.0 ) then
1726 call calc_EAM_prepair_rho(atid_i, atid_j, d, r, rijsq, rho_i_at_j, rho_j_at_i)
1727 endif
1728
1729 if ( iand(iHash, SC_PAIR).ne.0 ) then
1730 call calc_SC_prepair_rho(atid_i, atid_j, d, r, rijsq, rho_i_at_j, rho_j_at_i)
1731 endif
1732
1733 if ( iand(iHash, EAM_PAIR).ne.0 .or. iand(iHash, SC_PAIR).ne.0 ) then
1734 #ifdef IS_MPI
1735 rho_col(j) = rho_col(j) + rho_i_at_j
1736 rho_row(i) = rho_row(i) + rho_j_at_i
1737 #else
1738 rho(j) = rho(j) + rho_i_at_j
1739 rho(i) = rho(i) + rho_j_at_i
1740 #endif
1741 endif
1742
1743 end subroutine do_prepair
1744
1745
1746 subroutine do_preforce(nlocal, pot, particle_pot)
1747 integer :: nlocal
1748 real( kind = dp ),dimension(LR_POT_TYPES) :: pot
1749 real( kind = dp ),dimension(nlocal) :: particle_pot
1750 integer :: sc_err = 0
1751
1752 #ifdef IS_MPI
1753 if ((FF_uses_EAM .and. SIM_uses_EAM) .or. (FF_uses_SC .and. SIM_uses_SC)) then
1754 call scatter(rho_row,rho,plan_atom_row,sc_err)
1755 if (sc_err /= 0 ) then
1756 call handleError("do_preforce()", "Error scattering rho_row into rho")
1757 endif
1758 call scatter(rho_col,rho_tmp,plan_atom_col,sc_err)
1759 if (sc_err /= 0 ) then
1760 call handleError("do_preforce()", "Error scattering rho_col into rho")
1761 endif
1762 rho(1:nlocal) = rho(1:nlocal) + rho_tmp(1:nlocal)
1763 end if
1764 #endif
1765
1766
1767
1768 if (FF_uses_EAM .and. SIM_uses_EAM) then
1769 call calc_EAM_preforce_Frho(nlocal, pot(METALLIC_POT), particle_pot)
1770 endif
1771 if (FF_uses_SC .and. SIM_uses_SC) then
1772 call calc_SC_preforce_Frho(nlocal, pot(METALLIC_POT), particle_pot)
1773 endif
1774
1775 #ifdef IS_MPI
1776 if ((FF_uses_EAM .and. SIM_uses_EAM) .or. (FF_uses_SC .and. SIM_uses_SC)) then
1777 !! communicate f(rho) and derivatives back into row and column arrays
1778 call gather(frho,frho_row,plan_atom_row, sc_err)
1779 if (sc_err /= 0) then
1780 call handleError("do_preforce()","MPI gather frho_row failure")
1781 endif
1782 call gather(dfrhodrho,dfrhodrho_row,plan_atom_row, sc_err)
1783 if (sc_err /= 0) then
1784 call handleError("do_preforce()","MPI gather dfrhodrho_row failure")
1785 endif
1786 call gather(frho,frho_col,plan_atom_col, sc_err)
1787 if (sc_err /= 0) then
1788 call handleError("do_preforce()","MPI gather frho_col failure")
1789 endif
1790 call gather(dfrhodrho,dfrhodrho_col,plan_atom_col, sc_err)
1791 if (sc_err /= 0) then
1792 call handleError("do_preforce()","MPI gather dfrhodrho_col failure")
1793 endif
1794 end if
1795 #endif
1796
1797 end subroutine do_preforce
1798
1799
1800 subroutine get_interatomic_vector(q_i, q_j, d, r_sq)
1801
1802 real (kind = dp), dimension(3) :: q_i
1803 real (kind = dp), dimension(3) :: q_j
1804 real ( kind = dp ), intent(out) :: r_sq
1805 real( kind = dp ) :: d(3), scaled(3)
1806 real(kind=dp)::t
1807 integer i
1808
1809 d(1) = q_j(1) - q_i(1)
1810 d(2) = q_j(2) - q_i(2)
1811 d(3) = q_j(3) - q_i(3)
1812
1813 ! Wrap back into periodic box if necessary
1814 if ( SIM_uses_PBC ) then
1815
1816 if( .not.boxIsOrthorhombic ) then
1817 ! calc the scaled coordinates.
1818 ! unwrap the matmul and do things explicitly
1819 ! scaled = matmul(HmatInv, d)
1820
1821 scaled(1) = HmatInv(1,1)*d(1) + HmatInv(1,2)*d(2) + HmatInv(1,3)*d(3)
1822 scaled(2) = HmatInv(2,1)*d(1) + HmatInv(2,2)*d(2) + HmatInv(2,3)*d(3)
1823 scaled(3) = HmatInv(3,1)*d(1) + HmatInv(3,2)*d(2) + HmatInv(3,3)*d(3)
1824
1825 ! wrap the scaled coordinates (but don't use anint for speed)
1826
1827 t = scaled(1)
1828 if (t .ge. 0.0) then
1829 scaled(1) = t - floor(t + 0.5)
1830 else
1831 scaled(1) = t + ceiling(t - 0.5)
1832 endif
1833
1834 t = scaled(2)
1835 if (t .ge. 0.0) then
1836 scaled(2) = t - floor(t + 0.5)
1837 else
1838 scaled(2) = t + ceiling(t - 0.5)
1839 endif
1840
1841 t = scaled(3)
1842 if (t .ge. 0.0) then
1843 scaled(3) = t - floor(t + 0.5)
1844 else
1845 scaled(3) = t + ceiling(t - 0.5)
1846 endif
1847
1848 ! calc the wrapped real coordinates from the wrapped scaled
1849 ! coordinates
1850 ! d = matmul(Hmat,scaled)
1851 d(1)= Hmat(1,1)*scaled(1) + Hmat(1,2)*scaled(2) + Hmat(1,3)*scaled(3)
1852 d(2)= Hmat(2,1)*scaled(1) + Hmat(2,2)*scaled(2) + Hmat(2,3)*scaled(3)
1853 d(3)= Hmat(3,1)*scaled(1) + Hmat(3,2)*scaled(2) + Hmat(3,3)*scaled(3)
1854
1855 else
1856 ! calc the scaled coordinates
1857 scaled(1) = d(1) * HmatInv(1,1)
1858 scaled(2) = d(2) * HmatInv(2,2)
1859 scaled(3) = d(3) * HmatInv(3,3)
1860
1861 ! wrap the scaled coordinates
1862
1863 t = scaled(1)
1864 if (t .ge. 0.0) then
1865 scaled(1) = t - floor(t + 0.5)
1866 else
1867 scaled(1) = t + ceiling(t - 0.5)
1868 endif
1869
1870 t = scaled(2)
1871 if (t .ge. 0.0) then
1872 scaled(2) = t - floor(t + 0.5)
1873 else
1874 scaled(2) = t + ceiling(t - 0.5)
1875 endif
1876
1877 t = scaled(3)
1878 if (t .ge. 0.0) then
1879 scaled(3) = t - floor(t + 0.5)
1880 else
1881 scaled(3) = t + ceiling(t - 0.5)
1882 endif
1883
1884 ! calc the wrapped real coordinates from the wrapped scaled
1885 ! coordinates
1886
1887 d(1) = scaled(1)*Hmat(1,1)
1888 d(2) = scaled(2)*Hmat(2,2)
1889 d(3) = scaled(3)*Hmat(3,3)
1890
1891 endif
1892
1893 endif
1894
1895 r_sq = d(1)*d(1) + d(2)*d(2) + d(3)*d(3)
1896
1897 end subroutine get_interatomic_vector
1898
1899 subroutine zero_work_arrays()
1900
1901 #ifdef IS_MPI
1902
1903 q_Row = 0.0_dp
1904 q_Col = 0.0_dp
1905
1906 q_group_Row = 0.0_dp
1907 q_group_Col = 0.0_dp
1908
1909 eFrame_Row = 0.0_dp
1910 eFrame_Col = 0.0_dp
1911
1912 A_Row = 0.0_dp
1913 A_Col = 0.0_dp
1914
1915 f_Row = 0.0_dp
1916 f_Col = 0.0_dp
1917 f_Temp = 0.0_dp
1918
1919 t_Row = 0.0_dp
1920 t_Col = 0.0_dp
1921 t_Temp = 0.0_dp
1922
1923 pot_Row = 0.0_dp
1924 pot_Col = 0.0_dp
1925 pot_Temp = 0.0_dp
1926 ppot_Temp = 0.0_dp
1927
1928 frho_row = 0.0_dp
1929 frho_col = 0.0_dp
1930 rho_row = 0.0_dp
1931 rho_col = 0.0_dp
1932 rho_tmp = 0.0_dp
1933 dfrhodrho_row = 0.0_dp
1934 dfrhodrho_col = 0.0_dp
1935
1936 #endif
1937 rho = 0.0_dp
1938 frho = 0.0_dp
1939 dfrhodrho = 0.0_dp
1940
1941 end subroutine zero_work_arrays
1942
1943 function skipThisPair(atom1, atom2) result(skip_it)
1944 integer, intent(in) :: atom1
1945 integer, intent(in), optional :: atom2
1946 logical :: skip_it
1947 integer :: unique_id_1, unique_id_2
1948 integer :: me_i,me_j
1949 integer :: i
1950
1951 skip_it = .false.
1952
1953 !! there are a number of reasons to skip a pair or a particle
1954 !! mostly we do this to exclude atoms who are involved in short
1955 !! range interactions (bonds, bends, torsions), but we also need
1956 !! to exclude some overcounted interactions that result from
1957 !! the parallel decomposition
1958
1959 #ifdef IS_MPI
1960 !! in MPI, we have to look up the unique IDs for each atom
1961 unique_id_1 = AtomRowToGlobal(atom1)
1962 unique_id_2 = AtomColToGlobal(atom2)
1963 !! this situation should only arise in MPI simulations
1964 if (unique_id_1 == unique_id_2) then
1965 skip_it = .true.
1966 return
1967 end if
1968
1969 !! this prevents us from doing the pair on multiple processors
1970 if (unique_id_1 < unique_id_2) then
1971 if (mod(unique_id_1 + unique_id_2,2) == 0) then
1972 skip_it = .true.
1973 return
1974 endif
1975 else
1976 if (mod(unique_id_1 + unique_id_2,2) == 1) then
1977 skip_it = .true.
1978 return
1979 endif
1980 endif
1981 #else
1982 !! in the normal loop, the atom numbers are unique
1983 unique_id_1 = atom1
1984 unique_id_2 = atom2
1985 #endif
1986
1987 #ifdef IS_MPI
1988 do i = 1, nSkipsForRowAtom(atom1)
1989 if (skipsForRowAtom(atom1, i) .eq. unique_id_2) then
1990 skip_it = .true.
1991 return
1992 endif
1993 end do
1994 #else
1995 do i = 1, nSkipsForLocalAtom(atom1)
1996 if (skipsForLocalAtom(atom1, i) .eq. unique_id_2) then
1997 skip_it = .true.
1998 return
1999 endif
2000 end do
2001 #endif
2002
2003 return
2004 end function skipThisPair
2005
2006 function getTopoDistance(atom1, atom2) result(topoDist)
2007 integer, intent(in) :: atom1
2008 integer, intent(in) :: atom2
2009 integer :: topoDist
2010 integer :: unique_id_2
2011 integer :: i
2012
2013 #ifdef IS_MPI
2014 unique_id_2 = AtomColToGlobal(atom2)
2015 #else
2016 unique_id_2 = atom2
2017 #endif
2018
2019 ! zero is default for unconnected (i.e. normal) pair interactions
2020
2021 topoDist = 0
2022
2023 do i = 1, nTopoPairsForAtom(atom1)
2024 if (toposForAtom(atom1, i) .eq. unique_id_2) then
2025 topoDist = topoDistance(atom1, i)
2026 return
2027 endif
2028 end do
2029
2030 return
2031 end function getTopoDistance
2032
2033 function FF_UsesDirectionalAtoms() result(doesit)
2034 logical :: doesit
2035 doesit = FF_uses_DirectionalAtoms
2036 end function FF_UsesDirectionalAtoms
2037
2038 function FF_RequiresPrepairCalc() result(doesit)
2039 logical :: doesit
2040 doesit = FF_uses_EAM .or. FF_uses_SC
2041 end function FF_RequiresPrepairCalc
2042
2043 #ifdef PROFILE
2044 function getforcetime() result(totalforcetime)
2045 real(kind=dp) :: totalforcetime
2046 totalforcetime = forcetime
2047 end function getforcetime
2048 #endif
2049
2050 !! This cleans componets of force arrays belonging only to fortran
2051
2052 subroutine add_stress_tensor(dpair, fpair, tau)
2053
2054 real( kind = dp ), dimension(3), intent(in) :: dpair, fpair
2055 real( kind = dp ), dimension(9), intent(inout) :: tau
2056
2057 ! because the d vector is the rj - ri vector, and
2058 ! because fx, fy, fz are the force on atom i, we need a
2059 ! negative sign here:
2060
2061 tau(1) = tau(1) - dpair(1) * fpair(1)
2062 tau(2) = tau(2) - dpair(1) * fpair(2)
2063 tau(3) = tau(3) - dpair(1) * fpair(3)
2064 tau(4) = tau(4) - dpair(2) * fpair(1)
2065 tau(5) = tau(5) - dpair(2) * fpair(2)
2066 tau(6) = tau(6) - dpair(2) * fpair(3)
2067 tau(7) = tau(7) - dpair(3) * fpair(1)
2068 tau(8) = tau(8) - dpair(3) * fpair(2)
2069 tau(9) = tau(9) - dpair(3) * fpair(3)
2070
2071 end subroutine add_stress_tensor
2072
2073 end module doForces

Properties

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