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!! |
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!! Copyright (c) 2005, 2009 The University of Notre Dame. All Rights Reserved. |
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!! |
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!! The University of Notre Dame grants you ("Licensee") a |
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!! non-exclusive, royalty free, license to use, modify and |
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!! redistribute this software in source and binary code form, provided |
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!! that the following conditions are met: |
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!! |
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!! 1. Redistributions of source code must retain the above copyright |
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!! notice, this list of conditions and the following disclaimer. |
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!! |
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!! 2. Redistributions in binary form must reproduce the above copyright |
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!! notice, this list of conditions and the following disclaimer in the |
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!! documentation and/or other materials provided with the |
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!! distribution. |
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!! |
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!! This software is provided "AS IS," without a warranty of any |
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!! kind. All express or implied conditions, representations and |
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!! warranties, including any implied warranty of merchantability, |
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!! fitness for a particular purpose or non-infringement, are hereby |
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!! excluded. The University of Notre Dame and its licensors shall not |
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!! be liable for any damages suffered by licensee as a result of |
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!! using, modifying or distributing the software or its |
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!! derivatives. In no event will the University of Notre Dame or its |
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!! licensors be liable for any lost revenue, profit or data, or for |
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!! direct, indirect, special, consequential, incidental or punitive |
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!! damages, however caused and regardless of the theory of liability, |
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!! arising out of the use of or inability to use software, even if the |
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!! University of Notre Dame has been advised of the possibility of |
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!! such damages. |
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!! |
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!! SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
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!! research, please cite the appropriate papers when you publish your |
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!! work. Good starting points are: |
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!! |
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!! [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
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!! [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
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!! [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
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!! [4] Vardeman & Gezelter, in progress (2009). |
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!! |
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|
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!! doForces.F90 |
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!! module doForces |
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!! Calculates Long Range forces. |
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|
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!! @author Charles F. Vardeman II |
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!! @author Matthew Meineke |
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!! @version $Id$, $Date$, $Name: not supported by cvs2svn $, $Revision$ |
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|
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|
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module doForces |
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use force_globals |
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use fForceOptions |
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use simulation |
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use definitions |
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use atype_module |
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use switcheroo |
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use neighborLists |
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use lj |
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use sticky |
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use electrostatic_module |
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use gayberne |
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use shapes |
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use vector_class |
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use eam |
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use MetalNonMetal |
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use suttonchen |
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use status |
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#ifdef IS_MPI |
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use mpiSimulation |
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#endif |
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|
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implicit none |
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PRIVATE |
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|
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#define __FORTRAN90 |
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#include "UseTheForce/fCutoffPolicy.h" |
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#include "UseTheForce/DarkSide/fInteractionMap.h" |
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#include "UseTheForce/DarkSide/fElectrostaticSummationMethod.h" |
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|
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INTEGER, PARAMETER:: PREPAIR_LOOP = 1 |
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INTEGER, PARAMETER:: PAIR_LOOP = 2 |
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|
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logical, save :: haveNeighborList = .false. |
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logical, save :: haveSIMvariables = .false. |
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logical, save :: haveSaneForceField = .false. |
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logical, save :: haveInteractionHash = .false. |
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logical, save :: haveGtypeCutoffMap = .false. |
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logical, save :: haveDefaultCutoffs = .false. |
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logical, save :: haveSkinThickness = .false. |
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logical, save :: haveElectrostaticSummationMethod = .false. |
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logical, save :: haveCutoffPolicy = .false. |
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logical, save :: VisitCutoffsAfterComputing = .false. |
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logical, save :: do_box_dipole = .false. |
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|
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logical, save :: FF_uses_DirectionalAtoms |
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logical, save :: FF_uses_Dipoles |
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logical, save :: FF_uses_GayBerne |
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logical, save :: FF_uses_EAM |
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logical, save :: FF_uses_SC |
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logical, save :: FF_uses_MNM |
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|
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|
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logical, save :: SIM_uses_DirectionalAtoms |
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logical, save :: SIM_uses_EAM |
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logical, save :: SIM_uses_SC |
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logical, save :: SIM_uses_MNM |
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logical, save :: SIM_requires_postpair_calc |
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logical, save :: SIM_requires_prepair_calc |
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logical, save :: SIM_uses_PBC |
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logical, save :: SIM_uses_AtomicVirial |
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|
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integer, save :: electrostaticSummationMethod |
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integer, save :: cutoffPolicy = TRADITIONAL_CUTOFF_POLICY |
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|
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real(kind=dp), save :: defaultRcut, defaultRsw, largestRcut |
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real(kind=dp), save :: skinThickness |
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logical, save :: defaultDoShiftPot |
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logical, save :: defaultDoShiftFrc |
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|
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public :: init_FF |
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public :: setCutoffs |
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public :: cWasLame |
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public :: setElectrostaticMethod |
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public :: setBoxDipole |
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public :: getBoxDipole |
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public :: setCutoffPolicy |
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public :: setSkinThickness |
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public :: do_force_loop |
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|
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#ifdef PROFILE |
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public :: getforcetime |
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real, save :: forceTime = 0 |
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real :: forceTimeInitial, forceTimeFinal |
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integer :: nLoops |
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#endif |
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|
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!! Variables for cutoff mapping and interaction mapping |
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! Bit hash to determine pair-pair interactions. |
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integer, dimension(:,:), allocatable :: InteractionHash |
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real(kind=dp), dimension(:), allocatable :: atypeMaxCutoff |
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real(kind=dp), dimension(:), allocatable, target :: groupMaxCutoffRow |
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real(kind=dp), dimension(:), pointer :: groupMaxCutoffCol |
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|
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integer, dimension(:), allocatable, target :: groupToGtypeRow |
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integer, dimension(:), pointer :: groupToGtypeCol => null() |
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|
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real(kind=dp), dimension(:), allocatable,target :: gtypeMaxCutoffRow |
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real(kind=dp), dimension(:), pointer :: gtypeMaxCutoffCol |
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type ::gtypeCutoffs |
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real(kind=dp) :: rcut |
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real(kind=dp) :: rcutsq |
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real(kind=dp) :: rlistsq |
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end type gtypeCutoffs |
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type(gtypeCutoffs), dimension(:,:), allocatable :: gtypeCutoffMap |
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|
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real(kind=dp), dimension(3) :: boxDipole |
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|
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contains |
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|
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!!$ FUNCTION omd_anint(x) result(res) |
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!!$ real(kind=dp), intent(in) :: x |
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!!$ real(kind=dp) :: round, res |
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!!$ ! accept IEEE rounding, and possible large even results |
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!!$ ! on extended precision systems, use instead the corresponding EPSILON |
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!!$ round= SIGN(1.0_dp/EPSILON(x),x) |
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!!$ res= (x+round)-round |
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!!$ RETURN |
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!!$ end FUNCTION omd_anint |
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|
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subroutine createInteractionHash() |
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integer :: nAtypes |
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integer :: i |
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integer :: j |
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integer :: iHash |
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!! Test Types |
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logical :: i_is_LJ |
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logical :: i_is_Elect |
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logical :: i_is_Sticky |
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logical :: i_is_StickyP |
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logical :: i_is_GB |
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logical :: i_is_EAM |
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logical :: i_is_Shape |
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logical :: i_is_SC |
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logical :: j_is_LJ |
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logical :: j_is_Elect |
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logical :: j_is_Sticky |
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logical :: j_is_StickyP |
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logical :: j_is_GB |
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logical :: j_is_EAM |
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logical :: j_is_Shape |
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logical :: j_is_SC |
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real(kind=dp) :: myRcut |
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|
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if (.not. associated(atypes)) then |
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call handleError("doForces", "atypes was not present before call of createInteractionHash!") |
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return |
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endif |
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|
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nAtypes = getSize(atypes) |
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|
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if (nAtypes == 0) then |
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call handleError("doForces", "nAtypes was zero during call of createInteractionHash!") |
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return |
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end if |
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|
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if (.not. allocated(InteractionHash)) then |
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allocate(InteractionHash(nAtypes,nAtypes)) |
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else |
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deallocate(InteractionHash) |
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allocate(InteractionHash(nAtypes,nAtypes)) |
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endif |
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|
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if (.not. allocated(atypeMaxCutoff)) then |
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allocate(atypeMaxCutoff(nAtypes)) |
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else |
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deallocate(atypeMaxCutoff) |
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allocate(atypeMaxCutoff(nAtypes)) |
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endif |
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|
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do i = 1, nAtypes |
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call getElementProperty(atypes, i, "is_LennardJones", i_is_LJ) |
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call getElementProperty(atypes, i, "is_Electrostatic", i_is_Elect) |
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call getElementProperty(atypes, i, "is_Sticky", i_is_Sticky) |
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call getElementProperty(atypes, i, "is_StickyPower", i_is_StickyP) |
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call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
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call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
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call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
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call getElementProperty(atypes, i, "is_SC", i_is_SC) |
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|
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do j = i, nAtypes |
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|
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iHash = 0 |
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myRcut = 0.0_dp |
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|
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call getElementProperty(atypes, j, "is_LennardJones", j_is_LJ) |
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call getElementProperty(atypes, j, "is_Electrostatic", j_is_Elect) |
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call getElementProperty(atypes, j, "is_Sticky", j_is_Sticky) |
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call getElementProperty(atypes, j, "is_StickyPower", j_is_StickyP) |
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call getElementProperty(atypes, j, "is_GayBerne", j_is_GB) |
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call getElementProperty(atypes, j, "is_EAM", j_is_EAM) |
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call getElementProperty(atypes, j, "is_Shape", j_is_Shape) |
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call getElementProperty(atypes, j, "is_SC", j_is_SC) |
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|
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if (i_is_LJ .and. j_is_LJ) then |
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iHash = ior(iHash, LJ_PAIR) |
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endif |
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|
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if (i_is_Elect .and. j_is_Elect) then |
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iHash = ior(iHash, ELECTROSTATIC_PAIR) |
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endif |
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|
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if (i_is_Sticky .and. j_is_Sticky) then |
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iHash = ior(iHash, STICKY_PAIR) |
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endif |
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|
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if (i_is_StickyP .and. j_is_StickyP) then |
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iHash = ior(iHash, STICKYPOWER_PAIR) |
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endif |
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|
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if (i_is_EAM .and. j_is_EAM) then |
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iHash = ior(iHash, EAM_PAIR) |
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endif |
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|
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if (i_is_SC .and. j_is_SC) then |
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iHash = ior(iHash, SC_PAIR) |
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endif |
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|
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if (i_is_GB .and. j_is_GB) iHash = ior(iHash, GAYBERNE_PAIR) |
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if (i_is_GB .and. j_is_LJ) iHash = ior(iHash, GAYBERNE_LJ) |
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if (i_is_LJ .and. j_is_GB) iHash = ior(iHash, GAYBERNE_LJ) |
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|
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if ((i_is_EAM.or.i_is_SC).and.(.not.(j_is_EAM.or.j_is_SC))) iHash = ior(iHash, MNM_PAIR) |
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if ((j_is_EAM.or.j_is_SC).and.(.not.(i_is_EAM.or.i_is_SC))) iHash = ior(iHash, MNM_PAIR) |
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|
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if (i_is_Shape .and. j_is_Shape) iHash = ior(iHash, SHAPE_PAIR) |
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if (i_is_Shape .and. j_is_LJ) iHash = ior(iHash, SHAPE_LJ) |
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if (i_is_LJ .and. j_is_Shape) iHash = ior(iHash, SHAPE_LJ) |
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|
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|
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InteractionHash(i,j) = iHash |
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InteractionHash(j,i) = iHash |
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|
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end do |
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|
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end do |
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|
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haveInteractionHash = .true. |
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end subroutine createInteractionHash |
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|
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subroutine createGtypeCutoffMap() |
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|
293 |
logical :: i_is_LJ |
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logical :: i_is_Elect |
295 |
logical :: i_is_Sticky |
296 |
logical :: i_is_StickyP |
297 |
logical :: i_is_GB |
298 |
logical :: i_is_EAM |
299 |
logical :: i_is_Shape |
300 |
logical :: i_is_SC |
301 |
logical :: GtypeFound |
302 |
|
303 |
integer :: myStatus, nAtypes, i, j, istart, iend, jstart, jend |
304 |
integer :: n_in_i, me_i, ia, g, atom1, ja, n_in_j,me_j |
305 |
integer :: nGroupsInRow |
306 |
integer :: nGroupsInCol |
307 |
integer :: nGroupTypesRow,nGroupTypesCol |
308 |
real(kind=dp):: thisSigma, bigSigma, thisRcut, tradRcut, tol |
309 |
real(kind=dp) :: biggestAtypeCutoff |
310 |
|
311 |
if (.not. haveInteractionHash) then |
312 |
call createInteractionHash() |
313 |
endif |
314 |
#ifdef IS_MPI |
315 |
nGroupsInRow = getNgroupsInRow(plan_group_row) |
316 |
nGroupsInCol = getNgroupsInCol(plan_group_col) |
317 |
#endif |
318 |
nAtypes = getSize(atypes) |
319 |
! Set all of the initial cutoffs to zero. |
320 |
atypeMaxCutoff = 0.0_dp |
321 |
biggestAtypeCutoff = 0.0_dp |
322 |
do i = 1, nAtypes |
323 |
if (SimHasAtype(i)) then |
324 |
call getElementProperty(atypes, i, "is_LennardJones", i_is_LJ) |
325 |
call getElementProperty(atypes, i, "is_Electrostatic", i_is_Elect) |
326 |
call getElementProperty(atypes, i, "is_Sticky", i_is_Sticky) |
327 |
call getElementProperty(atypes, i, "is_StickyPower", i_is_StickyP) |
328 |
call getElementProperty(atypes, i, "is_GayBerne", i_is_GB) |
329 |
call getElementProperty(atypes, i, "is_EAM", i_is_EAM) |
330 |
call getElementProperty(atypes, i, "is_Shape", i_is_Shape) |
331 |
call getElementProperty(atypes, i, "is_SC", i_is_SC) |
332 |
|
333 |
if (haveDefaultCutoffs) then |
334 |
atypeMaxCutoff(i) = defaultRcut |
335 |
else |
336 |
if (i_is_LJ) then |
337 |
thisRcut = getSigma(i) * 2.5_dp |
338 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
339 |
endif |
340 |
if (i_is_Elect) then |
341 |
thisRcut = defaultRcut |
342 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
343 |
endif |
344 |
if (i_is_Sticky) then |
345 |
thisRcut = getStickyCut(i) |
346 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
347 |
endif |
348 |
if (i_is_StickyP) then |
349 |
thisRcut = getStickyPowerCut(i) |
350 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
351 |
endif |
352 |
if (i_is_GB) then |
353 |
thisRcut = getGayBerneCut(i) |
354 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
355 |
endif |
356 |
if (i_is_EAM) then |
357 |
thisRcut = getEAMCut(i) |
358 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
359 |
endif |
360 |
if (i_is_Shape) then |
361 |
thisRcut = getShapeCut(i) |
362 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
363 |
endif |
364 |
if (i_is_SC) then |
365 |
thisRcut = getSCCut(i) |
366 |
if (thisRCut .gt. atypeMaxCutoff(i)) atypeMaxCutoff(i) = thisRCut |
367 |
endif |
368 |
endif |
369 |
|
370 |
if (atypeMaxCutoff(i).gt.biggestAtypeCutoff) then |
371 |
biggestAtypeCutoff = atypeMaxCutoff(i) |
372 |
endif |
373 |
|
374 |
endif |
375 |
enddo |
376 |
|
377 |
istart = 1 |
378 |
jstart = 1 |
379 |
#ifdef IS_MPI |
380 |
iend = nGroupsInRow |
381 |
jend = nGroupsInCol |
382 |
#else |
383 |
iend = nGroups |
384 |
jend = nGroups |
385 |
#endif |
386 |
|
387 |
!! allocate the groupToGtype and gtypeMaxCutoff here. |
388 |
if(.not.allocated(groupToGtypeRow)) then |
389 |
! allocate(groupToGtype(iend)) |
390 |
allocate(groupToGtypeRow(iend)) |
391 |
else |
392 |
deallocate(groupToGtypeRow) |
393 |
allocate(groupToGtypeRow(iend)) |
394 |
endif |
395 |
if(.not.allocated(groupMaxCutoffRow)) then |
396 |
allocate(groupMaxCutoffRow(iend)) |
397 |
else |
398 |
deallocate(groupMaxCutoffRow) |
399 |
allocate(groupMaxCutoffRow(iend)) |
400 |
end if |
401 |
|
402 |
if(.not.allocated(gtypeMaxCutoffRow)) then |
403 |
allocate(gtypeMaxCutoffRow(iend)) |
404 |
else |
405 |
deallocate(gtypeMaxCutoffRow) |
406 |
allocate(gtypeMaxCutoffRow(iend)) |
407 |
endif |
408 |
|
409 |
|
410 |
#ifdef IS_MPI |
411 |
! We only allocate new storage if we are in MPI because Ncol /= Nrow |
412 |
if(.not.associated(groupToGtypeCol)) then |
413 |
allocate(groupToGtypeCol(jend)) |
414 |
else |
415 |
deallocate(groupToGtypeCol) |
416 |
allocate(groupToGtypeCol(jend)) |
417 |
end if |
418 |
|
419 |
if(.not.associated(groupMaxCutoffCol)) then |
420 |
allocate(groupMaxCutoffCol(jend)) |
421 |
else |
422 |
deallocate(groupMaxCutoffCol) |
423 |
allocate(groupMaxCutoffCol(jend)) |
424 |
end if |
425 |
if(.not.associated(gtypeMaxCutoffCol)) then |
426 |
allocate(gtypeMaxCutoffCol(jend)) |
427 |
else |
428 |
deallocate(gtypeMaxCutoffCol) |
429 |
allocate(gtypeMaxCutoffCol(jend)) |
430 |
end if |
431 |
|
432 |
groupMaxCutoffCol = 0.0_dp |
433 |
gtypeMaxCutoffCol = 0.0_dp |
434 |
|
435 |
#endif |
436 |
groupMaxCutoffRow = 0.0_dp |
437 |
gtypeMaxCutoffRow = 0.0_dp |
438 |
|
439 |
|
440 |
!! first we do a single loop over the cutoff groups to find the |
441 |
!! largest cutoff for any atypes present in this group. We also |
442 |
!! create gtypes at this point. |
443 |
|
444 |
tol = 1.0e-6_dp |
445 |
nGroupTypesRow = 0 |
446 |
nGroupTypesCol = 0 |
447 |
do i = istart, iend |
448 |
n_in_i = groupStartRow(i+1) - groupStartRow(i) |
449 |
groupMaxCutoffRow(i) = 0.0_dp |
450 |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
451 |
atom1 = groupListRow(ia) |
452 |
#ifdef IS_MPI |
453 |
me_i = atid_row(atom1) |
454 |
#else |
455 |
me_i = atid(atom1) |
456 |
#endif |
457 |
if (atypeMaxCutoff(me_i).gt.groupMaxCutoffRow(i)) then |
458 |
groupMaxCutoffRow(i)=atypeMaxCutoff(me_i) |
459 |
endif |
460 |
enddo |
461 |
if (nGroupTypesRow.eq.0) then |
462 |
nGroupTypesRow = nGroupTypesRow + 1 |
463 |
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
464 |
groupToGtypeRow(i) = nGroupTypesRow |
465 |
else |
466 |
GtypeFound = .false. |
467 |
do g = 1, nGroupTypesRow |
468 |
if ( abs(groupMaxCutoffRow(i) - gtypeMaxCutoffRow(g)).lt.tol) then |
469 |
groupToGtypeRow(i) = g |
470 |
GtypeFound = .true. |
471 |
endif |
472 |
enddo |
473 |
if (.not.GtypeFound) then |
474 |
nGroupTypesRow = nGroupTypesRow + 1 |
475 |
gtypeMaxCutoffRow(nGroupTypesRow) = groupMaxCutoffRow(i) |
476 |
groupToGtypeRow(i) = nGroupTypesRow |
477 |
endif |
478 |
endif |
479 |
enddo |
480 |
|
481 |
#ifdef IS_MPI |
482 |
do j = jstart, jend |
483 |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
484 |
groupMaxCutoffCol(j) = 0.0_dp |
485 |
do ja = groupStartCol(j), groupStartCol(j+1)-1 |
486 |
atom1 = groupListCol(ja) |
487 |
|
488 |
me_j = atid_col(atom1) |
489 |
|
490 |
if (atypeMaxCutoff(me_j).gt.groupMaxCutoffCol(j)) then |
491 |
groupMaxCutoffCol(j)=atypeMaxCutoff(me_j) |
492 |
endif |
493 |
enddo |
494 |
|
495 |
if (nGroupTypesCol.eq.0) then |
496 |
nGroupTypesCol = nGroupTypesCol + 1 |
497 |
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
498 |
groupToGtypeCol(j) = nGroupTypesCol |
499 |
else |
500 |
GtypeFound = .false. |
501 |
do g = 1, nGroupTypesCol |
502 |
if ( abs(groupMaxCutoffCol(j) - gtypeMaxCutoffCol(g)).lt.tol) then |
503 |
groupToGtypeCol(j) = g |
504 |
GtypeFound = .true. |
505 |
endif |
506 |
enddo |
507 |
if (.not.GtypeFound) then |
508 |
nGroupTypesCol = nGroupTypesCol + 1 |
509 |
gtypeMaxCutoffCol(nGroupTypesCol) = groupMaxCutoffCol(j) |
510 |
groupToGtypeCol(j) = nGroupTypesCol |
511 |
endif |
512 |
endif |
513 |
enddo |
514 |
|
515 |
#else |
516 |
! Set pointers to information we just found |
517 |
nGroupTypesCol = nGroupTypesRow |
518 |
groupToGtypeCol => groupToGtypeRow |
519 |
gtypeMaxCutoffCol => gtypeMaxCutoffRow |
520 |
groupMaxCutoffCol => groupMaxCutoffRow |
521 |
#endif |
522 |
|
523 |
!! allocate the gtypeCutoffMap here. |
524 |
allocate(gtypeCutoffMap(nGroupTypesRow,nGroupTypesCol)) |
525 |
!! then we do a double loop over all the group TYPES to find the cutoff |
526 |
!! map between groups of two types |
527 |
tradRcut = max(maxval(gtypeMaxCutoffRow),maxval(gtypeMaxCutoffCol)) |
528 |
|
529 |
do i = 1, nGroupTypesRow |
530 |
do j = 1, nGroupTypesCol |
531 |
|
532 |
select case(cutoffPolicy) |
533 |
case(TRADITIONAL_CUTOFF_POLICY) |
534 |
thisRcut = tradRcut |
535 |
case(MIX_CUTOFF_POLICY) |
536 |
thisRcut = 0.5_dp * (gtypeMaxCutoffRow(i) + gtypeMaxCutoffCol(j)) |
537 |
case(MAX_CUTOFF_POLICY) |
538 |
thisRcut = max(gtypeMaxCutoffRow(i), gtypeMaxCutoffCol(j)) |
539 |
case default |
540 |
call handleError("createGtypeCutoffMap", "Unknown Cutoff Policy") |
541 |
return |
542 |
end select |
543 |
gtypeCutoffMap(i,j)%rcut = thisRcut |
544 |
|
545 |
if (thisRcut.gt.largestRcut) largestRcut = thisRcut |
546 |
|
547 |
gtypeCutoffMap(i,j)%rcutsq = thisRcut*thisRcut |
548 |
|
549 |
if (.not.haveSkinThickness) then |
550 |
skinThickness = 1.0_dp |
551 |
endif |
552 |
|
553 |
gtypeCutoffMap(i,j)%rlistsq = (thisRcut + skinThickness)**2 |
554 |
|
555 |
! sanity check |
556 |
|
557 |
if (haveDefaultCutoffs) then |
558 |
if (abs(gtypeCutoffMap(i,j)%rcut - defaultRcut).gt.0.0001) then |
559 |
call handleError("createGtypeCutoffMap", "user-specified rCut does not match computed group Cutoff") |
560 |
endif |
561 |
endif |
562 |
enddo |
563 |
enddo |
564 |
|
565 |
if(allocated(gtypeMaxCutoffRow)) deallocate(gtypeMaxCutoffRow) |
566 |
if(allocated(groupMaxCutoffRow)) deallocate(groupMaxCutoffRow) |
567 |
if(allocated(atypeMaxCutoff)) deallocate(atypeMaxCutoff) |
568 |
#ifdef IS_MPI |
569 |
if(associated(groupMaxCutoffCol)) deallocate(groupMaxCutoffCol) |
570 |
if(associated(gtypeMaxCutoffCol)) deallocate(gtypeMaxCutoffCol) |
571 |
#endif |
572 |
groupMaxCutoffCol => null() |
573 |
gtypeMaxCutoffCol => null() |
574 |
|
575 |
haveGtypeCutoffMap = .true. |
576 |
end subroutine createGtypeCutoffMap |
577 |
|
578 |
subroutine setCutoffs(defRcut, defRsw, defSP, defSF) |
579 |
|
580 |
real(kind=dp),intent(in) :: defRcut, defRsw |
581 |
integer, intent(in) :: defSP, defSF |
582 |
character(len = statusMsgSize) :: errMsg |
583 |
integer :: localError |
584 |
|
585 |
defaultRcut = defRcut |
586 |
defaultRsw = defRsw |
587 |
|
588 |
if (defSP .ne. 0) then |
589 |
defaultDoShiftPot = .true. |
590 |
else |
591 |
defaultDoShiftPot = .false. |
592 |
endif |
593 |
if (defSF .ne. 0) then |
594 |
defaultDoShiftFrc = .true. |
595 |
else |
596 |
defaultDoShiftFrc = .false. |
597 |
endif |
598 |
|
599 |
if (abs(defaultRcut-defaultRsw) .lt. 0.0001) then |
600 |
if (defaultDoShiftFrc) then |
601 |
write(errMsg, *) & |
602 |
'cutoffRadius and switchingRadius are set to the', newline & |
603 |
// tab, 'same value. OpenMD will use shifted force', newline & |
604 |
// tab, 'potentials instead of switching functions.' |
605 |
|
606 |
call handleInfo("setCutoffs", errMsg) |
607 |
else |
608 |
write(errMsg, *) & |
609 |
'cutoffRadius and switchingRadius are set to the', newline & |
610 |
// tab, 'same value. OpenMD will use shifted', newline & |
611 |
// tab, 'potentials instead of switching functions.' |
612 |
|
613 |
call handleInfo("setCutoffs", errMsg) |
614 |
|
615 |
defaultDoShiftPot = .true. |
616 |
endif |
617 |
|
618 |
endif |
619 |
|
620 |
localError = 0 |
621 |
call setLJDefaultCutoff( defaultRcut, defaultDoShiftPot, & |
622 |
defaultDoShiftFrc ) |
623 |
call setElectrostaticCutoffRadius( defaultRcut, defaultRsw ) |
624 |
call setCutoffEAM( defaultRcut ) |
625 |
call setCutoffSC( defaultRcut ) |
626 |
call setMnMDefaultCutoff( defaultRcut, defaultDoShiftPot, & |
627 |
defaultDoShiftFrc ) |
628 |
call set_switch(defaultRsw, defaultRcut) |
629 |
call setHmatDangerousRcutValue(defaultRcut) |
630 |
|
631 |
haveDefaultCutoffs = .true. |
632 |
haveGtypeCutoffMap = .false. |
633 |
|
634 |
end subroutine setCutoffs |
635 |
|
636 |
subroutine cWasLame() |
637 |
|
638 |
VisitCutoffsAfterComputing = .true. |
639 |
return |
640 |
|
641 |
end subroutine cWasLame |
642 |
|
643 |
subroutine setCutoffPolicy(cutPolicy) |
644 |
|
645 |
integer, intent(in) :: cutPolicy |
646 |
|
647 |
cutoffPolicy = cutPolicy |
648 |
haveCutoffPolicy = .true. |
649 |
haveGtypeCutoffMap = .false. |
650 |
|
651 |
end subroutine setCutoffPolicy |
652 |
|
653 |
subroutine setBoxDipole() |
654 |
|
655 |
do_box_dipole = .true. |
656 |
|
657 |
end subroutine setBoxDipole |
658 |
|
659 |
subroutine getBoxDipole( box_dipole ) |
660 |
|
661 |
real(kind=dp), intent(inout), dimension(3) :: box_dipole |
662 |
|
663 |
box_dipole = boxDipole |
664 |
|
665 |
end subroutine getBoxDipole |
666 |
|
667 |
subroutine setElectrostaticMethod( thisESM ) |
668 |
|
669 |
integer, intent(in) :: thisESM |
670 |
|
671 |
electrostaticSummationMethod = thisESM |
672 |
haveElectrostaticSummationMethod = .true. |
673 |
|
674 |
end subroutine setElectrostaticMethod |
675 |
|
676 |
subroutine setSkinThickness( thisSkin ) |
677 |
|
678 |
real(kind=dp), intent(in) :: thisSkin |
679 |
|
680 |
skinThickness = thisSkin |
681 |
haveSkinThickness = .true. |
682 |
haveGtypeCutoffMap = .false. |
683 |
|
684 |
end subroutine setSkinThickness |
685 |
|
686 |
subroutine setSimVariables() |
687 |
SIM_uses_DirectionalAtoms = SimUsesDirectionalAtoms() |
688 |
SIM_uses_EAM = SimUsesEAM() |
689 |
SIM_requires_postpair_calc = SimRequiresPostpairCalc() |
690 |
SIM_requires_prepair_calc = SimRequiresPrepairCalc() |
691 |
SIM_uses_PBC = SimUsesPBC() |
692 |
SIM_uses_SC = SimUsesSC() |
693 |
SIM_uses_AtomicVirial = SimUsesAtomicVirial() |
694 |
|
695 |
haveSIMvariables = .true. |
696 |
|
697 |
return |
698 |
end subroutine setSimVariables |
699 |
|
700 |
subroutine doReadyCheck(error) |
701 |
integer, intent(out) :: error |
702 |
integer :: myStatus |
703 |
|
704 |
error = 0 |
705 |
|
706 |
if (.not. haveInteractionHash) then |
707 |
call createInteractionHash() |
708 |
endif |
709 |
|
710 |
if (.not. haveGtypeCutoffMap) then |
711 |
call createGtypeCutoffMap() |
712 |
endif |
713 |
|
714 |
if (VisitCutoffsAfterComputing) then |
715 |
call set_switch(largestRcut, largestRcut) |
716 |
call setHmatDangerousRcutValue(largestRcut) |
717 |
call setCutoffEAM(largestRcut) |
718 |
call setCutoffSC(largestRcut) |
719 |
VisitCutoffsAfterComputing = .false. |
720 |
endif |
721 |
|
722 |
if (.not. haveSIMvariables) then |
723 |
call setSimVariables() |
724 |
endif |
725 |
|
726 |
if (.not. haveNeighborList) then |
727 |
write(default_error, *) 'neighbor list has not been initialized in doForces!' |
728 |
error = -1 |
729 |
return |
730 |
end if |
731 |
|
732 |
if (.not. haveSaneForceField) then |
733 |
write(default_error, *) 'Force Field is not sane in doForces!' |
734 |
error = -1 |
735 |
return |
736 |
end if |
737 |
|
738 |
#ifdef IS_MPI |
739 |
if (.not. isMPISimSet()) then |
740 |
write(default_error,*) "ERROR: mpiSimulation has not been initialized!" |
741 |
error = -1 |
742 |
return |
743 |
endif |
744 |
#endif |
745 |
return |
746 |
end subroutine doReadyCheck |
747 |
|
748 |
|
749 |
subroutine init_FF(thisStat) |
750 |
|
751 |
integer, intent(out) :: thisStat |
752 |
integer :: my_status, nMatches |
753 |
integer, pointer :: MatchList(:) => null() |
754 |
|
755 |
!! assume things are copacetic, unless they aren't |
756 |
thisStat = 0 |
757 |
|
758 |
!! init_FF is called *after* all of the atom types have been |
759 |
!! defined in atype_module using the new_atype subroutine. |
760 |
!! |
761 |
!! this will scan through the known atypes and figure out what |
762 |
!! interactions are used by the force field. |
763 |
|
764 |
FF_uses_DirectionalAtoms = .false. |
765 |
FF_uses_Dipoles = .false. |
766 |
FF_uses_GayBerne = .false. |
767 |
FF_uses_EAM = .false. |
768 |
FF_uses_SC = .false. |
769 |
|
770 |
call getMatchingElementList(atypes, "is_Directional", .true., & |
771 |
nMatches, MatchList) |
772 |
if (nMatches .gt. 0) FF_uses_DirectionalAtoms = .true. |
773 |
|
774 |
call getMatchingElementList(atypes, "is_Dipole", .true., & |
775 |
nMatches, MatchList) |
776 |
if (nMatches .gt. 0) FF_uses_Dipoles = .true. |
777 |
|
778 |
call getMatchingElementList(atypes, "is_GayBerne", .true., & |
779 |
nMatches, MatchList) |
780 |
if (nMatches .gt. 0) FF_uses_GayBerne = .true. |
781 |
|
782 |
call getMatchingElementList(atypes, "is_EAM", .true., nMatches, MatchList) |
783 |
if (nMatches .gt. 0) FF_uses_EAM = .true. |
784 |
|
785 |
call getMatchingElementList(atypes, "is_SC", .true., nMatches, MatchList) |
786 |
if (nMatches .gt. 0) FF_uses_SC = .true. |
787 |
|
788 |
|
789 |
haveSaneForceField = .true. |
790 |
|
791 |
|
792 |
if (.not. haveNeighborList) then |
793 |
!! Create neighbor lists |
794 |
call expandNeighborList(nLocal, my_status) |
795 |
if (my_Status /= 0) then |
796 |
write(default_error,*) "SimSetup: ExpandNeighborList returned error." |
797 |
thisStat = -1 |
798 |
return |
799 |
endif |
800 |
haveNeighborList = .true. |
801 |
endif |
802 |
|
803 |
end subroutine init_FF |
804 |
|
805 |
|
806 |
!! Does force loop over i,j pairs. Calls do_pair to calculates forces. |
807 |
!-------------------------------------------------------------> |
808 |
subroutine do_force_loop(q, q_group, A, eFrame, f, t, tau, pot, particle_pot, & |
809 |
error) |
810 |
!! Position array provided by C, dimensioned by getNlocal |
811 |
real ( kind = dp ), dimension(3, nLocal) :: q |
812 |
!! molecular center-of-mass position array |
813 |
real ( kind = dp ), dimension(3, nGroups) :: q_group |
814 |
!! Rotation Matrix for each long range particle in simulation. |
815 |
real( kind = dp), dimension(9, nLocal) :: A |
816 |
!! Unit vectors for dipoles (lab frame) |
817 |
real( kind = dp ), dimension(9,nLocal) :: eFrame |
818 |
!! Force array provided by C, dimensioned by getNlocal |
819 |
real ( kind = dp ), dimension(3,nLocal) :: f |
820 |
!! Torsion array provided by C, dimensioned by getNlocal |
821 |
real( kind = dp ), dimension(3,nLocal) :: t |
822 |
|
823 |
!! Stress Tensor |
824 |
real( kind = dp), dimension(9) :: tau |
825 |
real ( kind = dp ),dimension(LR_POT_TYPES) :: pot |
826 |
real( kind = dp ), dimension(nLocal) :: particle_pot |
827 |
|
828 |
logical :: in_switching_region |
829 |
#ifdef IS_MPI |
830 |
real( kind = DP ), dimension(LR_POT_TYPES) :: pot_local |
831 |
integer :: nAtomsInRow |
832 |
integer :: nAtomsInCol |
833 |
integer :: nprocs |
834 |
integer :: nGroupsInRow |
835 |
integer :: nGroupsInCol |
836 |
#endif |
837 |
integer :: natoms |
838 |
logical :: update_nlist |
839 |
integer :: i, j, jstart, jend, jnab |
840 |
integer :: istart, iend |
841 |
integer :: ia, jb, atom1, atom2 |
842 |
integer :: nlist |
843 |
real( kind = DP ) :: ratmsq, rgrpsq, rgrp, rag, vpair, vij |
844 |
real( kind = DP ) :: sw, dswdr, swderiv, mf |
845 |
real( kind = DP ) :: rVal |
846 |
real(kind=dp),dimension(3) :: d_atm, d_grp, fpair, fij, fg, dag |
847 |
real(kind=dp) :: rfpot, mu_i |
848 |
real(kind=dp):: rCut |
849 |
integer :: me_i, me_j, n_in_i, n_in_j, iG, j1 |
850 |
logical :: is_dp_i |
851 |
integer :: neighborListSize |
852 |
integer :: listerror, error |
853 |
integer :: localError |
854 |
integer :: propPack_i, propPack_j |
855 |
integer :: loopStart, loopEnd, loop |
856 |
integer :: iHash, jHash |
857 |
integer :: i1, topoDist |
858 |
|
859 |
!! the variables for the box dipole moment |
860 |
#ifdef IS_MPI |
861 |
integer :: pChgCount_local |
862 |
integer :: nChgCount_local |
863 |
real(kind=dp) :: pChg_local |
864 |
real(kind=dp) :: nChg_local |
865 |
real(kind=dp), dimension(3) :: pChgPos_local |
866 |
real(kind=dp), dimension(3) :: nChgPos_local |
867 |
real(kind=dp), dimension(3) :: dipVec_local |
868 |
#endif |
869 |
integer :: pChgCount |
870 |
integer :: nChgCount |
871 |
real(kind=dp) :: pChg |
872 |
real(kind=dp) :: nChg |
873 |
real(kind=dp) :: chg_value |
874 |
real(kind=dp), dimension(3) :: pChgPos |
875 |
real(kind=dp), dimension(3) :: nChgPos |
876 |
real(kind=dp), dimension(3) :: dipVec |
877 |
real(kind=dp), dimension(3) :: chgVec |
878 |
real(kind=dp) :: skch |
879 |
|
880 |
!! initialize box dipole variables |
881 |
if (do_box_dipole) then |
882 |
#ifdef IS_MPI |
883 |
pChg_local = 0.0_dp |
884 |
nChg_local = 0.0_dp |
885 |
pChgCount_local = 0 |
886 |
nChgCount_local = 0 |
887 |
do i=1, 3 |
888 |
pChgPos_local = 0.0_dp |
889 |
nChgPos_local = 0.0_dp |
890 |
dipVec_local = 0.0_dp |
891 |
enddo |
892 |
#endif |
893 |
pChg = 0.0_dp |
894 |
nChg = 0.0_dp |
895 |
pChgCount = 0 |
896 |
nChgCount = 0 |
897 |
chg_value = 0.0_dp |
898 |
|
899 |
do i=1, 3 |
900 |
pChgPos(i) = 0.0_dp |
901 |
nChgPos(i) = 0.0_dp |
902 |
dipVec(i) = 0.0_dp |
903 |
chgVec(i) = 0.0_dp |
904 |
boxDipole(i) = 0.0_dp |
905 |
enddo |
906 |
endif |
907 |
|
908 |
!! initialize local variables |
909 |
|
910 |
#ifdef IS_MPI |
911 |
pot_local = 0.0_dp |
912 |
nAtomsInRow = getNatomsInRow(plan_atom_row) |
913 |
nAtomsInCol = getNatomsInCol(plan_atom_col) |
914 |
nGroupsInRow = getNgroupsInRow(plan_group_row) |
915 |
nGroupsInCol = getNgroupsInCol(plan_group_col) |
916 |
#else |
917 |
natoms = nlocal |
918 |
#endif |
919 |
|
920 |
call doReadyCheck(localError) |
921 |
if ( localError .ne. 0 ) then |
922 |
call handleError("do_force_loop", "Not Initialized") |
923 |
error = -1 |
924 |
return |
925 |
end if |
926 |
call zero_work_arrays() |
927 |
|
928 |
! Gather all information needed by all force loops: |
929 |
|
930 |
#ifdef IS_MPI |
931 |
|
932 |
call gather(q, q_Row, plan_atom_row_3d) |
933 |
call gather(q, q_Col, plan_atom_col_3d) |
934 |
|
935 |
call gather(q_group, q_group_Row, plan_group_row_3d) |
936 |
call gather(q_group, q_group_Col, plan_group_col_3d) |
937 |
|
938 |
if (FF_UsesDirectionalAtoms() .and. SIM_uses_DirectionalAtoms) then |
939 |
call gather(eFrame, eFrame_Row, plan_atom_row_rotation) |
940 |
call gather(eFrame, eFrame_Col, plan_atom_col_rotation) |
941 |
|
942 |
call gather(A, A_Row, plan_atom_row_rotation) |
943 |
call gather(A, A_Col, plan_atom_col_rotation) |
944 |
endif |
945 |
|
946 |
#endif |
947 |
|
948 |
!! Begin force loop timing: |
949 |
#ifdef PROFILE |
950 |
call cpu_time(forceTimeInitial) |
951 |
nloops = nloops + 1 |
952 |
#endif |
953 |
|
954 |
loopEnd = PAIR_LOOP |
955 |
if (FF_RequiresPrepairCalc() .and. SIM_requires_prepair_calc) then |
956 |
loopStart = PREPAIR_LOOP |
957 |
else |
958 |
loopStart = PAIR_LOOP |
959 |
endif |
960 |
|
961 |
do loop = loopStart, loopEnd |
962 |
|
963 |
! See if we need to update neighbor lists |
964 |
! (but only on the first time through): |
965 |
if (loop .eq. loopStart) then |
966 |
#ifdef IS_MPI |
967 |
call checkNeighborList(nGroupsInRow, q_group_row, skinThickness, & |
968 |
update_nlist) |
969 |
#else |
970 |
call checkNeighborList(nGroups, q_group, skinThickness, & |
971 |
update_nlist) |
972 |
#endif |
973 |
endif |
974 |
|
975 |
if (update_nlist) then |
976 |
!! save current configuration and construct neighbor list |
977 |
#ifdef IS_MPI |
978 |
call saveNeighborList(nGroupsInRow, q_group_row) |
979 |
#else |
980 |
call saveNeighborList(nGroups, q_group) |
981 |
#endif |
982 |
neighborListSize = size(list) |
983 |
nlist = 0 |
984 |
endif |
985 |
|
986 |
istart = 1 |
987 |
#ifdef IS_MPI |
988 |
iend = nGroupsInRow |
989 |
#else |
990 |
iend = nGroups - 1 |
991 |
#endif |
992 |
outer: do i = istart, iend |
993 |
|
994 |
if (update_nlist) point(i) = nlist + 1 |
995 |
|
996 |
n_in_i = groupStartRow(i+1) - groupStartRow(i) |
997 |
|
998 |
if (update_nlist) then |
999 |
#ifdef IS_MPI |
1000 |
jstart = 1 |
1001 |
jend = nGroupsInCol |
1002 |
#else |
1003 |
jstart = i+1 |
1004 |
jend = nGroups |
1005 |
#endif |
1006 |
else |
1007 |
jstart = point(i) |
1008 |
jend = point(i+1) - 1 |
1009 |
! make sure group i has neighbors |
1010 |
if (jstart .gt. jend) cycle outer |
1011 |
endif |
1012 |
|
1013 |
do jnab = jstart, jend |
1014 |
if (update_nlist) then |
1015 |
j = jnab |
1016 |
else |
1017 |
j = list(jnab) |
1018 |
endif |
1019 |
|
1020 |
#ifdef IS_MPI |
1021 |
me_j = atid_col(j) |
1022 |
call get_interatomic_vector(q_group_Row(:,i), & |
1023 |
q_group_Col(:,j), d_grp, rgrpsq) |
1024 |
#else |
1025 |
me_j = atid(j) |
1026 |
call get_interatomic_vector(q_group(:,i), & |
1027 |
q_group(:,j), d_grp, rgrpsq) |
1028 |
#endif |
1029 |
|
1030 |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rListsq) then |
1031 |
if (update_nlist) then |
1032 |
nlist = nlist + 1 |
1033 |
|
1034 |
if (nlist > neighborListSize) then |
1035 |
#ifdef IS_MPI |
1036 |
call expandNeighborList(nGroupsInRow, listerror) |
1037 |
#else |
1038 |
call expandNeighborList(nGroups, listerror) |
1039 |
#endif |
1040 |
if (listerror /= 0) then |
1041 |
error = -1 |
1042 |
write(DEFAULT_ERROR,*) "ERROR: nlist > list size and max allocations exceeded." |
1043 |
return |
1044 |
end if |
1045 |
neighborListSize = size(list) |
1046 |
endif |
1047 |
|
1048 |
list(nlist) = j |
1049 |
endif |
1050 |
|
1051 |
if (rgrpsq < gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCutsq) then |
1052 |
|
1053 |
rCut = gtypeCutoffMap(groupToGtypeRow(i),groupToGtypeCol(j))%rCut |
1054 |
if (loop .eq. PAIR_LOOP) then |
1055 |
vij = 0.0_dp |
1056 |
fij(1) = 0.0_dp |
1057 |
fij(2) = 0.0_dp |
1058 |
fij(3) = 0.0_dp |
1059 |
endif |
1060 |
|
1061 |
call get_switch(rgrpsq, sw, dswdr,rgrp, in_switching_region) |
1062 |
|
1063 |
n_in_j = groupStartCol(j+1) - groupStartCol(j) |
1064 |
|
1065 |
do ia = groupStartRow(i), groupStartRow(i+1)-1 |
1066 |
|
1067 |
atom1 = groupListRow(ia) |
1068 |
|
1069 |
inner: do jb = groupStartCol(j), groupStartCol(j+1)-1 |
1070 |
|
1071 |
atom2 = groupListCol(jb) |
1072 |
|
1073 |
if (skipThisPair(atom1, atom2)) cycle inner |
1074 |
|
1075 |
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
1076 |
d_atm(1) = d_grp(1) |
1077 |
d_atm(2) = d_grp(2) |
1078 |
d_atm(3) = d_grp(3) |
1079 |
ratmsq = rgrpsq |
1080 |
else |
1081 |
#ifdef IS_MPI |
1082 |
call get_interatomic_vector(q_Row(:,atom1), & |
1083 |
q_Col(:,atom2), d_atm, ratmsq) |
1084 |
#else |
1085 |
call get_interatomic_vector(q(:,atom1), & |
1086 |
q(:,atom2), d_atm, ratmsq) |
1087 |
#endif |
1088 |
endif |
1089 |
|
1090 |
topoDist = getTopoDistance(atom1, atom2) |
1091 |
|
1092 |
if (loop .eq. PREPAIR_LOOP) then |
1093 |
#ifdef IS_MPI |
1094 |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1095 |
rgrpsq, d_grp, rCut, & |
1096 |
eFrame, A, f, t, pot_local) |
1097 |
#else |
1098 |
call do_prepair(atom1, atom2, ratmsq, d_atm, sw, & |
1099 |
rgrpsq, d_grp, rCut, & |
1100 |
eFrame, A, f, t, pot) |
1101 |
#endif |
1102 |
else |
1103 |
#ifdef IS_MPI |
1104 |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1105 |
eFrame, A, f, t, pot_local, particle_pot, vpair, & |
1106 |
fpair, d_grp, rgrp, rCut, topoDist) |
1107 |
! particle_pot will be accumulated from row & column |
1108 |
! arrays later |
1109 |
#else |
1110 |
call do_pair(atom1, atom2, ratmsq, d_atm, sw, & |
1111 |
eFrame, A, f, t, pot, particle_pot, vpair, & |
1112 |
fpair, d_grp, rgrp, rCut, topoDist) |
1113 |
#endif |
1114 |
vij = vij + vpair |
1115 |
fij(1) = fij(1) + fpair(1) |
1116 |
fij(2) = fij(2) + fpair(2) |
1117 |
fij(3) = fij(3) + fpair(3) |
1118 |
call add_stress_tensor(d_atm, fpair, tau) |
1119 |
endif |
1120 |
enddo inner |
1121 |
enddo |
1122 |
|
1123 |
if (loop .eq. PAIR_LOOP) then |
1124 |
if (in_switching_region) then |
1125 |
swderiv = vij*dswdr/rgrp |
1126 |
fg = swderiv*d_grp |
1127 |
|
1128 |
fij(1) = fij(1) + fg(1) |
1129 |
fij(2) = fij(2) + fg(2) |
1130 |
fij(3) = fij(3) + fg(3) |
1131 |
|
1132 |
if ((n_in_i .eq. 1).and.(n_in_j .eq. 1)) then |
1133 |
call add_stress_tensor(d_atm, fg, tau) |
1134 |
endif |
1135 |
|
1136 |
do ia=groupStartRow(i), groupStartRow(i+1)-1 |
1137 |
atom1=groupListRow(ia) |
1138 |
mf = mfactRow(atom1) |
1139 |
! fg is the force on atom ia due to cutoff group's |
1140 |
! presence in switching region |
1141 |
fg = swderiv*d_grp*mf |
1142 |
#ifdef IS_MPI |
1143 |
f_Row(1,atom1) = f_Row(1,atom1) + fg(1) |
1144 |
f_Row(2,atom1) = f_Row(2,atom1) + fg(2) |
1145 |
f_Row(3,atom1) = f_Row(3,atom1) + fg(3) |
1146 |
#else |
1147 |
f(1,atom1) = f(1,atom1) + fg(1) |
1148 |
f(2,atom1) = f(2,atom1) + fg(2) |
1149 |
f(3,atom1) = f(3,atom1) + fg(3) |
1150 |
#endif |
1151 |
if (n_in_i .gt. 1) then |
1152 |
if (SIM_uses_AtomicVirial) then |
1153 |
! find the distance between the atom |
1154 |
! and the center of the cutoff group: |
1155 |
#ifdef IS_MPI |
1156 |
call get_interatomic_vector(q_Row(:,atom1), & |
1157 |
q_group_Row(:,i), dag, rag) |
1158 |
#else |
1159 |
call get_interatomic_vector(q(:,atom1), & |
1160 |
q_group(:,i), dag, rag) |
1161 |
#endif |
1162 |
call add_stress_tensor(dag,fg,tau) |
1163 |
endif |
1164 |
endif |
1165 |
enddo |
1166 |
|
1167 |
do jb=groupStartCol(j), groupStartCol(j+1)-1 |
1168 |
atom2=groupListCol(jb) |
1169 |
mf = mfactCol(atom2) |
1170 |
! fg is the force on atom jb due to cutoff group's |
1171 |
! presence in switching region |
1172 |
fg = -swderiv*d_grp*mf |
1173 |
#ifdef IS_MPI |
1174 |
f_Col(1,atom2) = f_Col(1,atom2) + fg(1) |
1175 |
f_Col(2,atom2) = f_Col(2,atom2) + fg(2) |
1176 |
f_Col(3,atom2) = f_Col(3,atom2) + fg(3) |
1177 |
#else |
1178 |
f(1,atom2) = f(1,atom2) + fg(1) |
1179 |
f(2,atom2) = f(2,atom2) + fg(2) |
1180 |
f(3,atom2) = f(3,atom2) + fg(3) |
1181 |
#endif |
1182 |
if (n_in_j .gt. 1) then |
1183 |
if (SIM_uses_AtomicVirial) then |
1184 |
! find the distance between the atom |
1185 |
! and the center of the cutoff group: |
1186 |
#ifdef IS_MPI |
1187 |
call get_interatomic_vector(q_Col(:,atom2), & |
1188 |
q_group_Col(:,j), dag, rag) |
1189 |
#else |
1190 |
call get_interatomic_vector(q(:,atom2), & |
1191 |
q_group(:,j), dag, rag) |
1192 |
#endif |
1193 |
call add_stress_tensor(dag,fg,tau) |
1194 |
endif |
1195 |
endif |
1196 |
enddo |
1197 |
endif |
1198 |
!if (.not.SIM_uses_AtomicVirial) then |
1199 |
! call add_stress_tensor(d_grp, fij, tau) |
1200 |
!endif |
1201 |
endif |
1202 |
endif |
1203 |
endif |
1204 |
enddo |
1205 |
|
1206 |
enddo outer |
1207 |
|
1208 |
if (update_nlist) then |
1209 |
#ifdef IS_MPI |
1210 |
point(nGroupsInRow + 1) = nlist + 1 |
1211 |
#else |
1212 |
point(nGroups) = nlist + 1 |
1213 |
#endif |
1214 |
if (loop .eq. PREPAIR_LOOP) then |
1215 |
! we just did the neighbor list update on the first |
1216 |
! pass, so we don't need to do it |
1217 |
! again on the second pass |
1218 |
update_nlist = .false. |
1219 |
endif |
1220 |
endif |
1221 |
|
1222 |
if (loop .eq. PREPAIR_LOOP) then |
1223 |
#ifdef IS_MPI |
1224 |
call do_preforce(nlocal, pot_local, particle_pot) |
1225 |
#else |
1226 |
call do_preforce(nlocal, pot, particle_pot) |
1227 |
#endif |
1228 |
endif |
1229 |
|
1230 |
enddo |
1231 |
|
1232 |
!! Do timing |
1233 |
#ifdef PROFILE |
1234 |
call cpu_time(forceTimeFinal) |
1235 |
forceTime = forceTime + forceTimeFinal - forceTimeInitial |
1236 |
#endif |
1237 |
|
1238 |
#ifdef IS_MPI |
1239 |
!!distribute forces |
1240 |
|
1241 |
f_temp = 0.0_dp |
1242 |
call scatter(f_Row,f_temp,plan_atom_row_3d) |
1243 |
do i = 1,nlocal |
1244 |
f(1:3,i) = f(1:3,i) + f_temp(1:3,i) |
1245 |
end do |
1246 |
|
1247 |
f_temp = 0.0_dp |
1248 |
call scatter(f_Col,f_temp,plan_atom_col_3d) |
1249 |
do i = 1,nlocal |
1250 |
f(1:3,i) = f(1:3,i) + f_temp(1:3,i) |
1251 |
end do |
1252 |
|
1253 |
if (FF_UsesDirectionalAtoms() .and. SIM_uses_DirectionalAtoms) then |
1254 |
t_temp = 0.0_dp |
1255 |
call scatter(t_Row,t_temp,plan_atom_row_3d) |
1256 |
do i = 1,nlocal |
1257 |
t(1:3,i) = t(1:3,i) + t_temp(1:3,i) |
1258 |
end do |
1259 |
t_temp = 0.0_dp |
1260 |
call scatter(t_Col,t_temp,plan_atom_col_3d) |
1261 |
|
1262 |
do i = 1,nlocal |
1263 |
t(1:3,i) = t(1:3,i) + t_temp(1:3,i) |
1264 |
end do |
1265 |
endif |
1266 |
|
1267 |
! scatter/gather pot_row into the members of my column |
1268 |
do i = 1,LR_POT_TYPES |
1269 |
call scatter(pot_Row(i,:), pot_Temp(i,:), plan_atom_row) |
1270 |
end do |
1271 |
! scatter/gather pot_local into all other procs |
1272 |
! add resultant to get total pot |
1273 |
do i = 1, nlocal |
1274 |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES) & |
1275 |
+ pot_Temp(1:LR_POT_TYPES,i) |
1276 |
enddo |
1277 |
|
1278 |
do i = 1,LR_POT_TYPES |
1279 |
particle_pot(1:nlocal) = particle_pot(1:nlocal) + pot_Temp(i,1:nlocal) |
1280 |
enddo |
1281 |
|
1282 |
pot_Temp = 0.0_DP |
1283 |
|
1284 |
do i = 1,LR_POT_TYPES |
1285 |
call scatter(pot_Col(i,:), pot_Temp(i,:), plan_atom_col) |
1286 |
end do |
1287 |
|
1288 |
do i = 1, nlocal |
1289 |
pot_local(1:LR_POT_TYPES) = pot_local(1:LR_POT_TYPES)& |
1290 |
+ pot_Temp(1:LR_POT_TYPES,i) |
1291 |
enddo |
1292 |
|
1293 |
do i = 1,LR_POT_TYPES |
1294 |
particle_pot(1:nlocal) = particle_pot(1:nlocal) + pot_Temp(i,1:nlocal) |
1295 |
enddo |
1296 |
|
1297 |
ppot_Temp = 0.0_DP |
1298 |
|
1299 |
call scatter(ppot_Row(:), ppot_Temp(:), plan_atom_row) |
1300 |
do i = 1, nlocal |
1301 |
particle_pot(i) = particle_pot(i) + ppot_Temp(i) |
1302 |
enddo |
1303 |
|
1304 |
ppot_Temp = 0.0_DP |
1305 |
|
1306 |
call scatter(ppot_Col(:), ppot_Temp(:), plan_atom_col) |
1307 |
do i = 1, nlocal |
1308 |
particle_pot(i) = particle_pot(i) + ppot_Temp(i) |
1309 |
enddo |
1310 |
|
1311 |
#endif |
1312 |
|
1313 |
if (SIM_requires_postpair_calc) then |
1314 |
do i = 1, nlocal |
1315 |
|
1316 |
! we loop only over the local atoms, so we don't need row and column |
1317 |
! lookups for the types |
1318 |
|
1319 |
me_i = atid(i) |
1320 |
|
1321 |
! is the atom electrostatic? See if it would have an |
1322 |
! electrostatic interaction with itself |
1323 |
iHash = InteractionHash(me_i,me_i) |
1324 |
|
1325 |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1326 |
|
1327 |
! loop over the excludes to accumulate charge in the |
1328 |
! cutoff sphere that we've left out of the normal pair loop |
1329 |
skch = 0.0_dp |
1330 |
|
1331 |
do i1 = 1, nSkipsForLocalAtom(i) |
1332 |
j = skipsForLocalAtom(i, i1) |
1333 |
me_j = atid(j) |
1334 |
jHash = InteractionHash(me_i,me_j) |
1335 |
if ( iand(jHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1336 |
skch = skch + getCharge(me_j) |
1337 |
endif |
1338 |
enddo |
1339 |
|
1340 |
#ifdef IS_MPI |
1341 |
call self_self(i, eFrame, skch, pot_local(ELECTROSTATIC_POT), t) |
1342 |
#else |
1343 |
call self_self(i, eFrame, skch, pot(ELECTROSTATIC_POT), t) |
1344 |
#endif |
1345 |
endif |
1346 |
|
1347 |
|
1348 |
if (electrostaticSummationMethod.eq.REACTION_FIELD) then |
1349 |
|
1350 |
! loop over the excludes to accumulate RF stuff we've |
1351 |
! left out of the normal pair loop |
1352 |
|
1353 |
do i1 = 1, nSkipsForLocalAtom(i) |
1354 |
j = skipsForLocalAtom(i, i1) |
1355 |
|
1356 |
! prevent overcounting of the skips |
1357 |
if (i.lt.j) then |
1358 |
call get_interatomic_vector(q(:,i), q(:,j), d_atm, ratmsq) |
1359 |
rVal = sqrt(ratmsq) |
1360 |
call get_switch(ratmsq, sw, dswdr, rVal,in_switching_region) |
1361 |
#ifdef IS_MPI |
1362 |
call rf_self_excludes(i, j, sw, 1.0_dp, eFrame, d_atm, rVal, & |
1363 |
vpair, pot_local(ELECTROSTATIC_POT), f, t) |
1364 |
#else |
1365 |
call rf_self_excludes(i, j, sw, 1.0_dp, eFrame, d_atm, rVal, & |
1366 |
vpair, pot(ELECTROSTATIC_POT), f, t) |
1367 |
#endif |
1368 |
endif |
1369 |
enddo |
1370 |
endif |
1371 |
|
1372 |
if (do_box_dipole) then |
1373 |
#ifdef IS_MPI |
1374 |
call accumulate_box_dipole(i, eFrame, q(:,i), pChg_local, & |
1375 |
nChg_local, pChgPos_local, nChgPos_local, dipVec_local, & |
1376 |
pChgCount_local, nChgCount_local) |
1377 |
#else |
1378 |
call accumulate_box_dipole(i, eFrame, q(:,i), pChg, nChg, & |
1379 |
pChgPos, nChgPos, dipVec, pChgCount, nChgCount) |
1380 |
#endif |
1381 |
endif |
1382 |
enddo |
1383 |
endif |
1384 |
|
1385 |
#ifdef IS_MPI |
1386 |
#ifdef SINGLE_PRECISION |
1387 |
call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_real,mpi_sum, & |
1388 |
mpi_comm_world,mpi_err) |
1389 |
#else |
1390 |
call mpi_allreduce(pot_local, pot, LR_POT_TYPES,mpi_double_precision, & |
1391 |
mpi_sum, mpi_comm_world,mpi_err) |
1392 |
#endif |
1393 |
|
1394 |
if (do_box_dipole) then |
1395 |
|
1396 |
#ifdef SINGLE_PRECISION |
1397 |
call mpi_allreduce(pChg_local, pChg, 1, mpi_real, mpi_sum, & |
1398 |
mpi_comm_world, mpi_err) |
1399 |
call mpi_allreduce(nChg_local, nChg, 1, mpi_real, mpi_sum, & |
1400 |
mpi_comm_world, mpi_err) |
1401 |
call mpi_allreduce(pChgCount_local, pChgCount, 1, mpi_integer, mpi_sum,& |
1402 |
mpi_comm_world, mpi_err) |
1403 |
call mpi_allreduce(nChgCount_local, nChgCount, 1, mpi_integer, mpi_sum,& |
1404 |
mpi_comm_world, mpi_err) |
1405 |
call mpi_allreduce(pChgPos_local, pChgPos, 3, mpi_real, mpi_sum, & |
1406 |
mpi_comm_world, mpi_err) |
1407 |
call mpi_allreduce(nChgPos_local, nChgPos, 3, mpi_real, mpi_sum, & |
1408 |
mpi_comm_world, mpi_err) |
1409 |
call mpi_allreduce(dipVec_local, dipVec, 3, mpi_real, mpi_sum, & |
1410 |
mpi_comm_world, mpi_err) |
1411 |
#else |
1412 |
call mpi_allreduce(pChg_local, pChg, 1, mpi_double_precision, mpi_sum, & |
1413 |
mpi_comm_world, mpi_err) |
1414 |
call mpi_allreduce(nChg_local, nChg, 1, mpi_double_precision, mpi_sum, & |
1415 |
mpi_comm_world, mpi_err) |
1416 |
call mpi_allreduce(pChgCount_local, pChgCount, 1, mpi_integer,& |
1417 |
mpi_sum, mpi_comm_world, mpi_err) |
1418 |
call mpi_allreduce(nChgCount_local, nChgCount, 1, mpi_integer,& |
1419 |
mpi_sum, mpi_comm_world, mpi_err) |
1420 |
call mpi_allreduce(pChgPos_local, pChgPos, 3, mpi_double_precision, & |
1421 |
mpi_sum, mpi_comm_world, mpi_err) |
1422 |
call mpi_allreduce(nChgPos_local, nChgPos, 3, mpi_double_precision, & |
1423 |
mpi_sum, mpi_comm_world, mpi_err) |
1424 |
call mpi_allreduce(dipVec_local, dipVec, 3, mpi_double_precision, & |
1425 |
mpi_sum, mpi_comm_world, mpi_err) |
1426 |
#endif |
1427 |
|
1428 |
endif |
1429 |
|
1430 |
#endif |
1431 |
|
1432 |
if (do_box_dipole) then |
1433 |
! first load the accumulated dipole moment (if dipoles were present) |
1434 |
boxDipole(1) = dipVec(1) |
1435 |
boxDipole(2) = dipVec(2) |
1436 |
boxDipole(3) = dipVec(3) |
1437 |
|
1438 |
! now include the dipole moment due to charges |
1439 |
! use the lesser of the positive and negative charge totals |
1440 |
if (nChg .le. pChg) then |
1441 |
chg_value = nChg |
1442 |
else |
1443 |
chg_value = pChg |
1444 |
endif |
1445 |
|
1446 |
! find the average positions |
1447 |
if (pChgCount .gt. 0 .and. nChgCount .gt. 0) then |
1448 |
pChgPos = pChgPos / pChgCount |
1449 |
nChgPos = nChgPos / nChgCount |
1450 |
endif |
1451 |
|
1452 |
! dipole is from the negative to the positive (physics notation) |
1453 |
chgVec(1) = pChgPos(1) - nChgPos(1) |
1454 |
chgVec(2) = pChgPos(2) - nChgPos(2) |
1455 |
chgVec(3) = pChgPos(3) - nChgPos(3) |
1456 |
|
1457 |
boxDipole(1) = boxDipole(1) + chgVec(1) * chg_value |
1458 |
boxDipole(2) = boxDipole(2) + chgVec(2) * chg_value |
1459 |
boxDipole(3) = boxDipole(3) + chgVec(3) * chg_value |
1460 |
|
1461 |
endif |
1462 |
|
1463 |
end subroutine do_force_loop |
1464 |
|
1465 |
subroutine do_pair(i, j, rijsq, d, sw, & |
1466 |
eFrame, A, f, t, pot, particle_pot, vpair, & |
1467 |
fpair, d_grp, r_grp, rCut, topoDist) |
1468 |
|
1469 |
real( kind = dp ) :: vpair, sw |
1470 |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1471 |
real( kind = dp ), dimension(nLocal) :: particle_pot |
1472 |
real( kind = dp ), dimension(3) :: fpair |
1473 |
real( kind = dp ), dimension(nLocal) :: mfact |
1474 |
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1475 |
real( kind = dp ), dimension(9,nLocal) :: A |
1476 |
real( kind = dp ), dimension(3,nLocal) :: f |
1477 |
real( kind = dp ), dimension(3,nLocal) :: t |
1478 |
|
1479 |
integer, intent(in) :: i, j |
1480 |
real ( kind = dp ), intent(inout) :: rijsq |
1481 |
real ( kind = dp ), intent(inout) :: r_grp |
1482 |
real ( kind = dp ), intent(inout) :: d(3) |
1483 |
real ( kind = dp ), intent(inout) :: d_grp(3) |
1484 |
real ( kind = dp ), intent(inout) :: rCut |
1485 |
integer, intent(inout) :: topoDist |
1486 |
real ( kind = dp ) :: r, pair_pot, vdwMult, electroMult |
1487 |
real ( kind = dp ) :: a_k, b_k, c_k, d_k, dx |
1488 |
|
1489 |
real( kind = dp), dimension(3) :: f1, t1, t2 |
1490 |
real( kind = dp), dimension(9) :: A1, A2, eF1, eF2 |
1491 |
real( kind = dp) :: dfrhodrho_i, dfrhodrho_j |
1492 |
real( kind = dp) :: rho_i, rho_j |
1493 |
real( kind = dp) :: fshift_i, fshift_j |
1494 |
real( kind = dp) :: p_vdw, p_elect, p_hb, p_met |
1495 |
integer :: atid_i, atid_j, id1, id2, idx |
1496 |
integer :: k |
1497 |
|
1498 |
integer :: iHash |
1499 |
|
1500 |
r = sqrt(rijsq) |
1501 |
|
1502 |
vpair = 0.0_dp |
1503 |
fpair(1:3) = 0.0_dp |
1504 |
|
1505 |
p_vdw = 0.0 |
1506 |
p_elect = 0.0 |
1507 |
p_hb = 0.0 |
1508 |
p_met = 0.0 |
1509 |
|
1510 |
f1(1:3) = 0.0 |
1511 |
t1(1:3) = 0.0 |
1512 |
t2(1:3) = 0.0 |
1513 |
|
1514 |
#ifdef IS_MPI |
1515 |
atid_i = atid_row(i) |
1516 |
atid_j = atid_col(j) |
1517 |
|
1518 |
do idx = 1, 9 |
1519 |
A1(idx) = A_Row(idx, i) |
1520 |
A2(idx) = A_Col(idx, j) |
1521 |
eF1(idx) = eFrame_Row(idx, i) |
1522 |
eF2(idx) = eFrame_Col(idx, j) |
1523 |
enddo |
1524 |
|
1525 |
#else |
1526 |
atid_i = atid(i) |
1527 |
atid_j = atid(j) |
1528 |
do idx = 1, 9 |
1529 |
A1(idx) = A(idx, i) |
1530 |
A2(idx) = A(idx, j) |
1531 |
eF1(idx) = eFrame(idx, i) |
1532 |
eF2(idx) = eFrame(idx, j) |
1533 |
enddo |
1534 |
|
1535 |
#endif |
1536 |
|
1537 |
|
1538 |
iHash = InteractionHash(atid_i, atid_j) |
1539 |
|
1540 |
!! For the metallic potentials, we need to pass dF[rho]/drho since |
1541 |
!! the pair calculation routines no longer are aware of parallel. |
1542 |
|
1543 |
if ( (iand(iHash, EAM_PAIR).ne.0) .or. (iand(iHash, SC_PAIR).ne.0) ) then |
1544 |
#ifdef IS_MPI |
1545 |
dfrhodrho_i = dfrhodrho_row(i) |
1546 |
dfrhodrho_j = dfrhodrho_col(j) |
1547 |
rho_i = rho_row(i) |
1548 |
rho_j = rho_col(j) |
1549 |
#else |
1550 |
dfrhodrho_i = dfrhodrho(i) |
1551 |
dfrhodrho_j = dfrhodrho(j) |
1552 |
rho_i = rho(i) |
1553 |
rho_j = rho(j) |
1554 |
#endif |
1555 |
end if |
1556 |
|
1557 |
vdwMult = vdwScale(topoDist) |
1558 |
electroMult = electrostaticScale(topoDist) |
1559 |
|
1560 |
if ( iand(iHash, LJ_PAIR).ne.0 ) then |
1561 |
call do_lj_pair(atid_i, atid_j, d, r, rijsq, rcut, sw, vdwMult, vpair, fpair, & |
1562 |
p_vdw, f1) |
1563 |
endif |
1564 |
|
1565 |
if ( iand(iHash, ELECTROSTATIC_PAIR).ne.0 ) then |
1566 |
call doElectrostaticPair(atid_i, atid_j, d, r, rijsq, rcut, sw, electroMult, & |
1567 |
vpair, fpair, p_elect, eF1, eF2, f1, t1, t2) |
1568 |
endif |
1569 |
|
1570 |
if ( iand(iHash, STICKY_PAIR).ne.0 ) then |
1571 |
call do_sticky_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, & |
1572 |
p_hb, A1, A2, f1, t1, t2) |
1573 |
endif |
1574 |
|
1575 |
if ( iand(iHash, STICKYPOWER_PAIR).ne.0 ) then |
1576 |
call do_sticky_power_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, & |
1577 |
p_hb, A1, A2, f1, t1, t2) |
1578 |
endif |
1579 |
|
1580 |
if ( iand(iHash, GAYBERNE_PAIR).ne.0 ) then |
1581 |
call do_gb_pair(atid_i, atid_j, d, r, rijsq, sw, vdwMult, vpair, fpair, & |
1582 |
p_vdw, A1, A2, f1, t1, t2) |
1583 |
endif |
1584 |
|
1585 |
if ( iand(iHash, GAYBERNE_LJ).ne.0 ) then |
1586 |
call do_gb_pair(atid_i, atid_j, d, r, rijsq, sw, vdwMult, vpair, fpair, & |
1587 |
p_vdw, A1, A2, f1, t1, t2) |
1588 |
endif |
1589 |
|
1590 |
if ( iand(iHash, SHAPE_PAIR).ne.0 ) then |
1591 |
call do_shape_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, & |
1592 |
p_vdw, A1, A2, f1, t1, t2) |
1593 |
endif |
1594 |
|
1595 |
if ( iand(iHash, SHAPE_LJ).ne.0 ) then |
1596 |
call do_shape_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, fpair, & |
1597 |
p_vdw, A1, A2, f1, t1, t2) |
1598 |
endif |
1599 |
|
1600 |
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1601 |
call do_eam_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, & |
1602 |
fpair, p_met, f1, rho_i, rho_j, dfrhodrho_i, dfrhodrho_j, fshift_i,fshift_j) |
1603 |
endif |
1604 |
|
1605 |
if ( iand(iHash, SC_PAIR).ne.0 ) then |
1606 |
call do_SC_pair(atid_i, atid_j, d, r, rijsq, sw, vpair, & |
1607 |
fpair, p_met, f1, rho_i, rho_j, dfrhodrho_i, dfrhodrho_j, fshift_i, fshift_j) |
1608 |
endif |
1609 |
|
1610 |
if ( iand(iHash, MNM_PAIR).ne.0 ) then |
1611 |
call do_mnm_pair(atid_i, atid_j, d, r, rijsq, rcut, sw, vdwMult, vpair, fpair, & |
1612 |
p_vdw, A1, A2, f1, t1, t2) |
1613 |
endif |
1614 |
|
1615 |
|
1616 |
#ifdef IS_MPI |
1617 |
id1 = AtomRowToGlobal(i) |
1618 |
id2 = AtomColToGlobal(j) |
1619 |
|
1620 |
pot_row(VDW_POT,i) = pot_row(VDW_POT,i) + 0.5*p_vdw |
1621 |
pot_col(VDW_POT,j) = pot_col(VDW_POT,j) + 0.5*p_vdw |
1622 |
pot_row(ELECTROSTATIC_POT,i) = pot_row(ELECTROSTATIC_POT,i) + 0.5*p_elect |
1623 |
pot_col(ELECTROSTATIC_POT,j) = pot_col(ELECTROSTATIC_POT,j) + 0.5*p_elect |
1624 |
pot_row(HB_POT,i) = pot_row(HB_POT,i) + 0.5*p_hb |
1625 |
pot_col(HB_POT,j) = pot_col(HB_POT,j) + 0.5*p_hb |
1626 |
pot_Row(METALLIC_POT,i) = pot_Row(METALLIC_POT,i) + 0.5*p_met |
1627 |
pot_Col(METALLIC_POT,j) = pot_Col(METALLIC_POT,j) + 0.5*p_met |
1628 |
|
1629 |
do idx = 1, 3 |
1630 |
f_Row(idx,i) = f_Row(idx,i) + f1(idx) |
1631 |
f_Col(idx,j) = f_Col(idx,j) - f1(idx) |
1632 |
|
1633 |
t_Row(idx,i) = t_Row(idx,i) + t1(idx) |
1634 |
t_Col(idx,j) = t_Col(idx,j) + t2(idx) |
1635 |
enddo |
1636 |
! particle_pot is the difference between the full potential |
1637 |
! and the full potential without the presence of a particular |
1638 |
! particle (atom1). |
1639 |
! |
1640 |
! This reduces the density at other particle locations, so |
1641 |
! we need to recompute the density at atom2 assuming atom1 |
1642 |
! didn't contribute. This then requires recomputing the |
1643 |
! density functional for atom2 as well. |
1644 |
! |
1645 |
! Most of the particle_pot heavy lifting comes from the |
1646 |
! pair interaction, and will be handled by vpair. Parallel version. |
1647 |
|
1648 |
if ( (iand(iHash, EAM_PAIR).ne.0) .or. (iand(iHash, SC_PAIR).ne.0) ) then |
1649 |
ppot_row(i) = ppot_row(i) - frho_row(j) + fshift_j |
1650 |
ppot_col(j) = ppot_col(j) - frho_col(i) + fshift_i |
1651 |
end if |
1652 |
|
1653 |
#else |
1654 |
id1 = i |
1655 |
id2 = j |
1656 |
|
1657 |
pot(VDW_POT) = pot(VDW_POT) + p_vdw |
1658 |
pot(ELECTROSTATIC_POT) = pot(ELECTROSTATIC_POT) + p_elect |
1659 |
pot(HB_POT) = pot(HB_POT) + p_hb |
1660 |
pot(METALLIC_POT) = pot(METALLIC_POT) + p_met |
1661 |
|
1662 |
do idx = 1, 3 |
1663 |
f(idx,i) = f(idx,i) + f1(idx) |
1664 |
f(idx,j) = f(idx,j) - f1(idx) |
1665 |
|
1666 |
t(idx,i) = t(idx,i) + t1(idx) |
1667 |
t(idx,j) = t(idx,j) + t2(idx) |
1668 |
enddo |
1669 |
! particle_pot is the difference between the full potential |
1670 |
! and the full potential without the presence of a particular |
1671 |
! particle (atom1). |
1672 |
! |
1673 |
! This reduces the density at other particle locations, so |
1674 |
! we need to recompute the density at atom2 assuming atom1 |
1675 |
! didn't contribute. This then requires recomputing the |
1676 |
! density functional for atom2 as well. |
1677 |
! |
1678 |
! Most of the particle_pot heavy lifting comes from the |
1679 |
! pair interaction, and will be handled by vpair. NonParallel version. |
1680 |
|
1681 |
if ( (iand(iHash, EAM_PAIR).ne.0) .or. (iand(iHash, SC_PAIR).ne.0) ) then |
1682 |
particle_pot(i) = particle_pot(i) - frho(j) + fshift_j |
1683 |
particle_pot(j) = particle_pot(j) - frho(i) + fshift_i |
1684 |
end if |
1685 |
|
1686 |
|
1687 |
#endif |
1688 |
|
1689 |
if (molMembershipList(id1) .ne. molMembershipList(id2)) then |
1690 |
|
1691 |
fpair(1) = fpair(1) + f1(1) |
1692 |
fpair(2) = fpair(2) + f1(2) |
1693 |
fpair(3) = fpair(3) + f1(3) |
1694 |
|
1695 |
endif |
1696 |
|
1697 |
|
1698 |
!!$ |
1699 |
!!$ particle_pot(i) = particle_pot(i) + vpair*sw |
1700 |
!!$ particle_pot(j) = particle_pot(j) + vpair*sw |
1701 |
|
1702 |
end subroutine do_pair |
1703 |
|
1704 |
subroutine do_prepair(i, j, rijsq, d, sw, rcijsq, dc, rCut, & |
1705 |
eFrame, A, f, t, pot) |
1706 |
|
1707 |
real( kind = dp ) :: sw |
1708 |
real( kind = dp ), dimension(LR_POT_TYPES) :: pot |
1709 |
real( kind = dp ), dimension(9,nLocal) :: eFrame |
1710 |
real (kind=dp), dimension(9,nLocal) :: A |
1711 |
real (kind=dp), dimension(3,nLocal) :: f |
1712 |
real (kind=dp), dimension(3,nLocal) :: t |
1713 |
|
1714 |
integer, intent(in) :: i, j |
1715 |
real ( kind = dp ), intent(inout) :: rijsq, rcijsq, rCut |
1716 |
real ( kind = dp ) :: r, rc |
1717 |
real ( kind = dp ), intent(inout) :: d(3), dc(3) |
1718 |
real ( kind = dp ) :: rho_i_at_j, rho_j_at_i |
1719 |
integer :: atid_i, atid_j, iHash |
1720 |
|
1721 |
r = sqrt(rijsq) |
1722 |
|
1723 |
#ifdef IS_MPI |
1724 |
atid_i = atid_row(i) |
1725 |
atid_j = atid_col(j) |
1726 |
#else |
1727 |
atid_i = atid(i) |
1728 |
atid_j = atid(j) |
1729 |
#endif |
1730 |
rho_i_at_j = 0.0_dp |
1731 |
rho_j_at_i = 0.0_dp |
1732 |
|
1733 |
iHash = InteractionHash(atid_i, atid_j) |
1734 |
|
1735 |
if ( iand(iHash, EAM_PAIR).ne.0 ) then |
1736 |
call calc_EAM_prepair_rho(atid_i, atid_j, d, r, rijsq, rho_i_at_j, rho_j_at_i) |
1737 |
endif |
1738 |
|
1739 |
if ( iand(iHash, SC_PAIR).ne.0 ) then |
1740 |
call calc_SC_prepair_rho(atid_i, atid_j, d, r, rijsq, rho_i_at_j, rho_j_at_i) |
1741 |
endif |
1742 |
|
1743 |
if ( iand(iHash, EAM_PAIR).ne.0 .or. iand(iHash, SC_PAIR).ne.0 ) then |
1744 |
#ifdef IS_MPI |
1745 |
rho_col(j) = rho_col(j) + rho_i_at_j |
1746 |
rho_row(i) = rho_row(i) + rho_j_at_i |
1747 |
#else |
1748 |
rho(j) = rho(j) + rho_i_at_j |
1749 |
rho(i) = rho(i) + rho_j_at_i |
1750 |
#endif |
1751 |
endif |
1752 |
|
1753 |
end subroutine do_prepair |
1754 |
|
1755 |
|
1756 |
subroutine do_preforce(nlocal, pot, particle_pot) |
1757 |
integer :: nlocal |
1758 |
real( kind = dp ),dimension(LR_POT_TYPES) :: pot |
1759 |
real( kind = dp ),dimension(nlocal) :: particle_pot |
1760 |
integer :: sc_err = 0 |
1761 |
|
1762 |
#ifdef IS_MPI |
1763 |
if ((FF_uses_EAM .and. SIM_uses_EAM) .or. (FF_uses_SC .and. SIM_uses_SC)) then |
1764 |
call scatter(rho_row,rho,plan_atom_row,sc_err) |
1765 |
if (sc_err /= 0 ) then |
1766 |
call handleError("do_preforce()", "Error scattering rho_row into rho") |
1767 |
endif |
1768 |
call scatter(rho_col,rho_tmp,plan_atom_col,sc_err) |
1769 |
if (sc_err /= 0 ) then |
1770 |
call handleError("do_preforce()", "Error scattering rho_col into rho") |
1771 |
endif |
1772 |
rho(1:nlocal) = rho(1:nlocal) + rho_tmp(1:nlocal) |
1773 |
end if |
1774 |
#endif |
1775 |
|
1776 |
|
1777 |
|
1778 |
if (FF_uses_EAM .and. SIM_uses_EAM) then |
1779 |
call calc_EAM_preforce_Frho(nlocal, pot(METALLIC_POT), particle_pot) |
1780 |
endif |
1781 |
if (FF_uses_SC .and. SIM_uses_SC) then |
1782 |
call calc_SC_preforce_Frho(nlocal, pot(METALLIC_POT), particle_pot) |
1783 |
endif |
1784 |
|
1785 |
#ifdef IS_MPI |
1786 |
if ((FF_uses_EAM .and. SIM_uses_EAM) .or. (FF_uses_SC .and. SIM_uses_SC)) then |
1787 |
!! communicate f(rho) and derivatives back into row and column arrays |
1788 |
call gather(frho,frho_row,plan_atom_row, sc_err) |
1789 |
if (sc_err /= 0) then |
1790 |
call handleError("do_preforce()","MPI gather frho_row failure") |
1791 |
endif |
1792 |
call gather(dfrhodrho,dfrhodrho_row,plan_atom_row, sc_err) |
1793 |
if (sc_err /= 0) then |
1794 |
call handleError("do_preforce()","MPI gather dfrhodrho_row failure") |
1795 |
endif |
1796 |
call gather(frho,frho_col,plan_atom_col, sc_err) |
1797 |
if (sc_err /= 0) then |
1798 |
call handleError("do_preforce()","MPI gather frho_col failure") |
1799 |
endif |
1800 |
call gather(dfrhodrho,dfrhodrho_col,plan_atom_col, sc_err) |
1801 |
if (sc_err /= 0) then |
1802 |
call handleError("do_preforce()","MPI gather dfrhodrho_col failure") |
1803 |
endif |
1804 |
end if |
1805 |
#endif |
1806 |
|
1807 |
end subroutine do_preforce |
1808 |
|
1809 |
|
1810 |
subroutine get_interatomic_vector(q_i, q_j, d, r_sq) |
1811 |
|
1812 |
real (kind = dp), dimension(3) :: q_i |
1813 |
real (kind = dp), dimension(3) :: q_j |
1814 |
real ( kind = dp ), intent(out) :: r_sq |
1815 |
real( kind = dp ) :: d(3), scaled(3) |
1816 |
real(kind=dp)::t |
1817 |
integer i |
1818 |
|
1819 |
d(1) = q_j(1) - q_i(1) |
1820 |
d(2) = q_j(2) - q_i(2) |
1821 |
d(3) = q_j(3) - q_i(3) |
1822 |
|
1823 |
! Wrap back into periodic box if necessary |
1824 |
if ( SIM_uses_PBC ) then |
1825 |
|
1826 |
if( .not.boxIsOrthorhombic ) then |
1827 |
! calc the scaled coordinates. |
1828 |
! scaled = matmul(HmatInv, d) |
1829 |
|
1830 |
scaled(1) = HmatInv(1,1)*d(1) + HmatInv(1,2)*d(2) + HmatInv(1,3)*d(3) |
1831 |
scaled(2) = HmatInv(2,1)*d(1) + HmatInv(2,2)*d(2) + HmatInv(2,3)*d(3) |
1832 |
scaled(3) = HmatInv(3,1)*d(1) + HmatInv(3,2)*d(2) + HmatInv(3,3)*d(3) |
1833 |
|
1834 |
! wrap the scaled coordinates |
1835 |
|
1836 |
t = scaled(1) |
1837 |
if (t .ge. 0.0) then |
1838 |
scaled(1) = t - floor(t + 0.5) |
1839 |
else |
1840 |
scaled(1) = t + ceiling(t - 0.5) |
1841 |
endif |
1842 |
|
1843 |
t = scaled(2) |
1844 |
if (t .ge. 0.0) then |
1845 |
scaled(2) = t - floor(t + 0.5) |
1846 |
else |
1847 |
scaled(2) = t + ceiling(t - 0.5) |
1848 |
endif |
1849 |
|
1850 |
t = scaled(3) |
1851 |
if (t .ge. 0.0) then |
1852 |
scaled(3) = t - floor(t + 0.5) |
1853 |
else |
1854 |
scaled(3) = t + ceiling(t - 0.5) |
1855 |
endif |
1856 |
|
1857 |
! calc the wrapped real coordinates from the wrapped scaled |
1858 |
! coordinates |
1859 |
! d = matmul(Hmat,scaled) |
1860 |
d(1)= Hmat(1,1)*scaled(1) + Hmat(1,2)*scaled(2) + Hmat(1,3)*scaled(3) |
1861 |
d(2)= Hmat(2,1)*scaled(1) + Hmat(2,2)*scaled(2) + Hmat(2,3)*scaled(3) |
1862 |
d(3)= Hmat(3,1)*scaled(1) + Hmat(3,2)*scaled(2) + Hmat(3,3)*scaled(3) |
1863 |
|
1864 |
else |
1865 |
! calc the scaled coordinates |
1866 |
scaled(1) = d(1) * HmatInv(1,1) |
1867 |
scaled(2) = d(2) * HmatInv(2,2) |
1868 |
scaled(3) = d(3) * HmatInv(3,3) |
1869 |
|
1870 |
! wrap the scaled coordinates |
1871 |
|
1872 |
t = scaled(1) |
1873 |
if (t .ge. 0.0) then |
1874 |
scaled(1) = t - floor(t + 0.5) |
1875 |
else |
1876 |
scaled(1) = t + ceiling(t - 0.5) |
1877 |
endif |
1878 |
|
1879 |
t = scaled(2) |
1880 |
if (t .ge. 0.0) then |
1881 |
scaled(2) = t - floor(t + 0.5) |
1882 |
else |
1883 |
scaled(2) = t + ceiling(t - 0.5) |
1884 |
endif |
1885 |
|
1886 |
t = scaled(3) |
1887 |
if (t .ge. 0.0) then |
1888 |
scaled(3) = t - floor(t + 0.5) |
1889 |
else |
1890 |
scaled(3) = t + ceiling(t - 0.5) |
1891 |
endif |
1892 |
|
1893 |
!scaled(1) = scaled(1) - omd_round(scaled(1)) |
1894 |
!scaled(2) = scaled(2) - omd_round(scaled(2)) |
1895 |
!scaled(3) = scaled(3) - omd_round(scaled(3)) |
1896 |
|
1897 |
! calc the wrapped real coordinates from the wrapped scaled |
1898 |
! coordinates |
1899 |
|
1900 |
d(1) = scaled(1)*Hmat(1,1) |
1901 |
d(2) = scaled(2)*Hmat(2,2) |
1902 |
d(3) = scaled(3)*Hmat(3,3) |
1903 |
|
1904 |
endif |
1905 |
|
1906 |
endif |
1907 |
|
1908 |
r_sq = d(1)*d(1) + d(2)*d(2) + d(3)*d(3) |
1909 |
|
1910 |
end subroutine get_interatomic_vector |
1911 |
|
1912 |
subroutine zero_work_arrays() |
1913 |
|
1914 |
#ifdef IS_MPI |
1915 |
|
1916 |
q_Row = 0.0_dp |
1917 |
q_Col = 0.0_dp |
1918 |
|
1919 |
q_group_Row = 0.0_dp |
1920 |
q_group_Col = 0.0_dp |
1921 |
|
1922 |
eFrame_Row = 0.0_dp |
1923 |
eFrame_Col = 0.0_dp |
1924 |
|
1925 |
A_Row = 0.0_dp |
1926 |
A_Col = 0.0_dp |
1927 |
|
1928 |
f_Row = 0.0_dp |
1929 |
f_Col = 0.0_dp |
1930 |
f_Temp = 0.0_dp |
1931 |
|
1932 |
t_Row = 0.0_dp |
1933 |
t_Col = 0.0_dp |
1934 |
t_Temp = 0.0_dp |
1935 |
|
1936 |
pot_Row = 0.0_dp |
1937 |
pot_Col = 0.0_dp |
1938 |
pot_Temp = 0.0_dp |
1939 |
ppot_Temp = 0.0_dp |
1940 |
|
1941 |
frho_row = 0.0_dp |
1942 |
frho_col = 0.0_dp |
1943 |
rho_row = 0.0_dp |
1944 |
rho_col = 0.0_dp |
1945 |
rho_tmp = 0.0_dp |
1946 |
dfrhodrho_row = 0.0_dp |
1947 |
dfrhodrho_col = 0.0_dp |
1948 |
|
1949 |
#endif |
1950 |
rho = 0.0_dp |
1951 |
frho = 0.0_dp |
1952 |
dfrhodrho = 0.0_dp |
1953 |
|
1954 |
end subroutine zero_work_arrays |
1955 |
|
1956 |
function skipThisPair(atom1, atom2) result(skip_it) |
1957 |
integer, intent(in) :: atom1 |
1958 |
integer, intent(in), optional :: atom2 |
1959 |
logical :: skip_it |
1960 |
integer :: unique_id_1, unique_id_2 |
1961 |
integer :: me_i,me_j |
1962 |
integer :: i |
1963 |
|
1964 |
skip_it = .false. |
1965 |
|
1966 |
!! there are a number of reasons to skip a pair or a particle |
1967 |
!! mostly we do this to exclude atoms who are involved in short |
1968 |
!! range interactions (bonds, bends, torsions), but we also need |
1969 |
!! to exclude some overcounted interactions that result from |
1970 |
!! the parallel decomposition |
1971 |
|
1972 |
#ifdef IS_MPI |
1973 |
!! in MPI, we have to look up the unique IDs for each atom |
1974 |
unique_id_1 = AtomRowToGlobal(atom1) |
1975 |
unique_id_2 = AtomColToGlobal(atom2) |
1976 |
!! this situation should only arise in MPI simulations |
1977 |
if (unique_id_1 == unique_id_2) then |
1978 |
skip_it = .true. |
1979 |
return |
1980 |
end if |
1981 |
|
1982 |
!! this prevents us from doing the pair on multiple processors |
1983 |
if (unique_id_1 < unique_id_2) then |
1984 |
if (mod(unique_id_1 + unique_id_2,2) == 0) then |
1985 |
skip_it = .true. |
1986 |
return |
1987 |
endif |
1988 |
else |
1989 |
if (mod(unique_id_1 + unique_id_2,2) == 1) then |
1990 |
skip_it = .true. |
1991 |
return |
1992 |
endif |
1993 |
endif |
1994 |
#else |
1995 |
!! in the normal loop, the atom numbers are unique |
1996 |
unique_id_1 = atom1 |
1997 |
unique_id_2 = atom2 |
1998 |
#endif |
1999 |
|
2000 |
#ifdef IS_MPI |
2001 |
do i = 1, nSkipsForRowAtom(atom1) |
2002 |
if (skipsForRowAtom(atom1, i) .eq. unique_id_2) then |
2003 |
skip_it = .true. |
2004 |
return |
2005 |
endif |
2006 |
end do |
2007 |
#else |
2008 |
do i = 1, nSkipsForLocalAtom(atom1) |
2009 |
if (skipsForLocalAtom(atom1, i) .eq. unique_id_2) then |
2010 |
skip_it = .true. |
2011 |
return |
2012 |
endif |
2013 |
end do |
2014 |
#endif |
2015 |
|
2016 |
return |
2017 |
end function skipThisPair |
2018 |
|
2019 |
function getTopoDistance(atom1, atom2) result(topoDist) |
2020 |
integer, intent(in) :: atom1 |
2021 |
integer, intent(in) :: atom2 |
2022 |
integer :: topoDist |
2023 |
integer :: unique_id_2 |
2024 |
integer :: i |
2025 |
|
2026 |
#ifdef IS_MPI |
2027 |
unique_id_2 = AtomColToGlobal(atom2) |
2028 |
#else |
2029 |
unique_id_2 = atom2 |
2030 |
#endif |
2031 |
|
2032 |
! zero is default for unconnected (i.e. normal) pair interactions |
2033 |
|
2034 |
topoDist = 0 |
2035 |
|
2036 |
do i = 1, nTopoPairsForAtom(atom1) |
2037 |
if (toposForAtom(atom1, i) .eq. unique_id_2) then |
2038 |
topoDist = topoDistance(atom1, i) |
2039 |
return |
2040 |
endif |
2041 |
end do |
2042 |
|
2043 |
return |
2044 |
end function getTopoDistance |
2045 |
|
2046 |
function FF_UsesDirectionalAtoms() result(doesit) |
2047 |
logical :: doesit |
2048 |
doesit = FF_uses_DirectionalAtoms |
2049 |
end function FF_UsesDirectionalAtoms |
2050 |
|
2051 |
function FF_RequiresPrepairCalc() result(doesit) |
2052 |
logical :: doesit |
2053 |
doesit = FF_uses_EAM .or. FF_uses_SC |
2054 |
end function FF_RequiresPrepairCalc |
2055 |
|
2056 |
#ifdef PROFILE |
2057 |
function getforcetime() result(totalforcetime) |
2058 |
real(kind=dp) :: totalforcetime |
2059 |
totalforcetime = forcetime |
2060 |
end function getforcetime |
2061 |
#endif |
2062 |
|
2063 |
!! This cleans componets of force arrays belonging only to fortran |
2064 |
|
2065 |
subroutine add_stress_tensor(dpair, fpair, tau) |
2066 |
|
2067 |
real( kind = dp ), dimension(3), intent(in) :: dpair, fpair |
2068 |
real( kind = dp ), dimension(9), intent(inout) :: tau |
2069 |
|
2070 |
! because the d vector is the rj - ri vector, and |
2071 |
! because fx, fy, fz are the force on atom i, we need a |
2072 |
! negative sign here: |
2073 |
|
2074 |
tau(1) = tau(1) - dpair(1) * fpair(1) |
2075 |
tau(2) = tau(2) - dpair(1) * fpair(2) |
2076 |
tau(3) = tau(3) - dpair(1) * fpair(3) |
2077 |
tau(4) = tau(4) - dpair(2) * fpair(1) |
2078 |
tau(5) = tau(5) - dpair(2) * fpair(2) |
2079 |
tau(6) = tau(6) - dpair(2) * fpair(3) |
2080 |
tau(7) = tau(7) - dpair(3) * fpair(1) |
2081 |
tau(8) = tau(8) - dpair(3) * fpair(2) |
2082 |
tau(9) = tau(9) - dpair(3) * fpair(3) |
2083 |
|
2084 |
end subroutine add_stress_tensor |
2085 |
|
2086 |
end module doForces |