src/UseTheForce/ForceFields.hpp

#ifndef __FORCEFIELDS_H__
#define __FORCEFIELDS_H__

#define MK_STR(s) # s
#define STR_DEFINE(t, s) t = MK_STR(s)


#include <stdio.h>
#include <stdlib.h>
#include <math.h>

#include "primitives/Atom.hpp"
#include "brains/SimInfo.hpp"
#include "primitives/StuntDouble.hpp"

#ifdef IS_MPI
#include "UseTheForce/mpiForceField.h"
#endif

#include ""UseTheForce/fForceField.h""
#include "UseTheForce/fortranWrapDefines.hpp"

class bond_pair{
public:
  bond_pair(){}
  ~bond_pair(){}

  int a;
  int b;
};

class bend_set{
public:
  bend_set(){ isGhost = 0; }
  ~bend_set(){}

  int ghost;
  int isGhost;

  int a;
  int b;
  int c;
};

class torsion_set{
public:
  torsion_set(){}
  ~torsion_set(){}

  int a;
  int b;
  int c;
  int d;
};


class ForceFields{

public:
  ForceFields(){ frcFile = NULL; entry_plug = NULL; has_variant=0;}
  ForceFields(char * theVariant ){ frcFile = NULL; entry_plug = NULL; has_variant=1; strcpy(variant, theVariant); }
  virtual ~ForceFields(){}
  
  void setSimInfo( SimInfo* the_entry_plug ) { entry_plug = the_entry_plug; }
  
  virtual void readParams( void ) = 0;
  
  virtual void cleanMe( void ) = 0;


  virtual void initializeAtoms( int nAtoms, Atom** atomArray ) = 0;
  virtual void initializeBonds( int nBonds, Bond** bondArray,
                                bond_pair* the_bonds ) = 0;
  virtual void initializeBends( int nBends, Bend** bendArray,
                                bend_set* the_bends ) = 0;
  virtual void initializeTorsions( int nTorsions, Torsion** torsionArray,
                                   torsion_set* the_torsions ) = 0;
  virtual void initForceField( int ljMixRule ) = 0;
  virtual void initRestraints();
  virtual void dumpzAngle();

  virtual void calcRcut( void );
  virtual void setRcut( double LJrcut );
  virtual void doForces( int calcPot, int calcStress );

  virtual double getAtomTypeMass(char* atomType) = 0;

  void setFortranForceLoop( doForceLoop_TD fsub ){
    fortranForceLoop = fsub;
  }

protected:
  
  void initFortran( int ljMixPolicy, int useReactionField );
  doForceLoop_TD fortranForceLoop;

  FILE *frcFile;
  SimInfo* entry_plug;
  
  int lineNum;
  char readLine[500];
  char* eof_test;
  char variant[100];
  short int has_variant;
  double bigSigma;

};


class DUFF : public ForceFields{

public:
  DUFF();
  virtual ~DUFF();

  void readParams();
  void cleanMe( void );

  void initializeAtoms( int nAtoms, Atom** atomArray );
  void initializeBonds( int nBonds, Bond** bondArray,
                        bond_pair* the_bonds );
  void initializeBends( int nBends, Bend** bendArray,
                        bend_set* the_bends );
  void initializeTorsions( int nTorsions, Torsion** torsionArray,
                           torsion_set* the_torsions );

  void initForceField( int ljMixRule );
  double getAtomTypeMass(char* atomType);

private:
  
  void fastForward( char* stopText, char* searchOwner );
};

class LJFF : public ForceFields{

public:
  LJFF();
  virtual ~LJFF();
  

  void readParams();
  void cleanMe( void );

  void initializeAtoms( int nAtoms, Atom** atomArray );
  void initializeBonds( int nBonds, Bond** bondArray,
                        bond_pair* the_bonds );
  void initializeBends( int nBends, Bend** bendArray,
                        bend_set* the_bends );
  void initializeTorsions( int nTorsions, Torsion** torsionArray,
                           torsion_set* the_torsions );

  void initForceField( int ljMixRule );
  double getAtomTypeMass(char* atomType);

private:

  void fastForward( char* stopText, char* searchOwner );

};

class EAM_FF : public ForceFields{

public:
  EAM_FF();
  EAM_FF(char* the_variant);
  virtual ~EAM_FF();
  

  void readParams();
  void cleanMe( void );

  void initializeAtoms( int nAtoms, Atom** atomArray );
  void initializeBonds( int nBonds, Bond** bondArray,
                        bond_pair* the_bonds );
  void initializeBends( int nBends, Bend** bendArray,
                        bend_set* the_bends );
  void initializeTorsions( int nTorsions, Torsion** torsionArray,
                           torsion_set* the_torsions );

  void initForceField( int ljMixRule );

  void calcRcut( void );
  double getAtomTypeMass(char* atomType);
private:

  void fastForward( char* stopText, char* searchOwner );
  
  double eamRcut;
};

class WATER : public ForceFields{

public:
  WATER();
  virtual ~WATER();

  void readParams();
  void cleanMe( void );
  void initializeAtoms( int nAtoms, Atom** atomArray );
  void initializeBonds( int nBonds, Bond** bondArray,
                        bond_pair* the_bonds );
  void initializeBends( int nBends, Bend** bendArray,
                        bend_set* the_bends );
  void initializeTorsions( int nTorsions, Torsion** torsionArray,
                           torsion_set* the_torsions );
  void initForceField( int ljMixRule );
  double getAtomTypeMass(char* atomType);

private:
  
  void fastForward( char* stopText, char* searchOwner );
  void sectionSearch( char* secHead, char* stopText, char* searchOwner );

};

#endif

Revision:	3
Committed:	Fri Sep 24 16:27:58 2004 UTC (20 years, 7 months ago) by tim
File size:	4717 byte(s)
Log Message:	change the #include in source files
#	User	Rev	Content
1	gezelter	2	#ifndef __FORCEFIELDS_H__
2			#define __FORCEFIELDS_H__
3
4			#define MK_STR(s) # s
5			#define STR_DEFINE(t, s) t = MK_STR(s)
6
7
8			#include <stdio.h>
9			#include <stdlib.h>
10			#include <math.h>
11
12	tim	3	#include "primitives/Atom.hpp"
13			#include "brains/SimInfo.hpp"
14			#include "primitives/StuntDouble.hpp"
15	gezelter	2
16			#ifdef IS_MPI
17	tim	3	#include "UseTheForce/mpiForceField.h"
18	gezelter	2	#endif
19
20	tim	3	#include ""UseTheForce/fForceField.h""
21			#include "UseTheForce/fortranWrapDefines.hpp"
22	gezelter	2
23			class bond_pair{
24			public:
25			bond_pair(){}
26			~bond_pair(){}
27
28			int a;
29			int b;
30			};
31
32			class bend_set{
33			public:
34			bend_set(){ isGhost = 0; }
35			~bend_set(){}
36
37			int ghost;
38			int isGhost;
39
40			int a;
41			int b;
42			int c;
43			};
44
45			class torsion_set{
46			public:
47			torsion_set(){}
48			~torsion_set(){}
49
50			int a;
51			int b;
52			int c;
53			int d;
54			};
55
56
57
58			class ForceFields{
59
60			public:
61			ForceFields(){ frcFile = NULL; entry_plug = NULL; has_variant=0;}
62			ForceFields(char * theVariant ){ frcFile = NULL; entry_plug = NULL; has_variant=1; strcpy(variant, theVariant); }
63			virtual ~ForceFields(){}
64
65			void setSimInfo( SimInfo* the_entry_plug ) { entry_plug = the_entry_plug; }
66
67			virtual void readParams( void ) = 0;
68
69			virtual void cleanMe( void ) = 0;
70
71
72			virtual void initializeAtoms( int nAtoms, Atom** atomArray ) = 0;
73			virtual void initializeBonds( int nBonds, Bond** bondArray,
74			bond_pair* the_bonds ) = 0;
75			virtual void initializeBends( int nBends, Bend** bendArray,
76			bend_set* the_bends ) = 0;
77			virtual void initializeTorsions( int nTorsions, Torsion** torsionArray,
78			torsion_set* the_torsions ) = 0;
79			virtual void initForceField( int ljMixRule ) = 0;
80			virtual void initRestraints();
81			virtual void dumpzAngle();
82
83			virtual void calcRcut( void );
84			virtual void setRcut( double LJrcut );
85			virtual void doForces( int calcPot, int calcStress );
86
87			virtual double getAtomTypeMass(char* atomType) = 0;
88
89			void setFortranForceLoop( doForceLoop_TD fsub ){
90			fortranForceLoop = fsub;
91			}
92
93			protected:
94
95			void initFortran( int ljMixPolicy, int useReactionField );
96			doForceLoop_TD fortranForceLoop;
97
98			FILE *frcFile;
99			SimInfo* entry_plug;
100
101			int lineNum;
102			char readLine[500];
103			char* eof_test;
104			char variant[100];
105			short int has_variant;
106			double bigSigma;
107
108			};
109
110
111			class DUFF : public ForceFields{
112
113			public:
114			DUFF();
115			virtual ~DUFF();
116
117			void readParams();
118			void cleanMe( void );
119
120			void initializeAtoms( int nAtoms, Atom** atomArray );
121			void initializeBonds( int nBonds, Bond** bondArray,
122			bond_pair* the_bonds );
123			void initializeBends( int nBends, Bend** bendArray,
124			bend_set* the_bends );
125			void initializeTorsions( int nTorsions, Torsion** torsionArray,
126			torsion_set* the_torsions );
127
128			void initForceField( int ljMixRule );
129			double getAtomTypeMass(char* atomType);
130
131			private:
132
133			void fastForward( char* stopText, char* searchOwner );
134			};
135
136			class LJFF : public ForceFields{
137
138			public:
139			LJFF();
140			virtual ~LJFF();
141
142
143			void readParams();
144			void cleanMe( void );
145
146			void initializeAtoms( int nAtoms, Atom** atomArray );
147			void initializeBonds( int nBonds, Bond** bondArray,
148			bond_pair* the_bonds );
149			void initializeBends( int nBends, Bend** bendArray,
150			bend_set* the_bends );
151			void initializeTorsions( int nTorsions, Torsion** torsionArray,
152			torsion_set* the_torsions );
153
154			void initForceField( int ljMixRule );
155			double getAtomTypeMass(char* atomType);
156
157			private:
158
159			void fastForward( char* stopText, char* searchOwner );
160
161			};
162
163			class EAM_FF : public ForceFields{
164
165			public:
166			EAM_FF();
167			EAM_FF(char* the_variant);
168			virtual ~EAM_FF();
169
170
171			void readParams();
172			void cleanMe( void );
173
174			void initializeAtoms( int nAtoms, Atom** atomArray );
175			void initializeBonds( int nBonds, Bond** bondArray,
176			bond_pair* the_bonds );
177			void initializeBends( int nBends, Bend** bendArray,
178			bend_set* the_bends );
179			void initializeTorsions( int nTorsions, Torsion** torsionArray,
180			torsion_set* the_torsions );
181
182			void initForceField( int ljMixRule );
183
184			void calcRcut( void );
185			double getAtomTypeMass(char* atomType);
186			private:
187
188			void fastForward( char* stopText, char* searchOwner );
189
190			double eamRcut;
191			};
192
193			class WATER : public ForceFields{
194
195			public:
196			WATER();
197			virtual ~WATER();
198
199			void readParams();
200			void cleanMe( void );
201			void initializeAtoms( int nAtoms, Atom** atomArray );
202			void initializeBonds( int nBonds, Bond** bondArray,
203			bond_pair* the_bonds );
204			void initializeBends( int nBends, Bend** bendArray,
205			bend_set* the_bends );
206			void initializeTorsions( int nTorsions, Torsion** torsionArray,
207			torsion_set* the_torsions );
208			void initForceField( int ljMixRule );
209			double getAtomTypeMass(char* atomType);
210
211			private:
212
213			void fastForward( char* stopText, char* searchOwner );
214			void sectionSearch( char* secHead, char* stopText, char* searchOwner );
215
216			};
217
218			#endif
219