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gezelter |
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!! |
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!! Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
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!! |
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!! The University of Notre Dame grants you ("Licensee") a |
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!! non-exclusive, royalty free, license to use, modify and |
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!! redistribute this software in source and binary code form, provided |
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!! that the following conditions are met: |
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!! |
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!! 1. Acknowledgement of the program authors must be made in any |
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!! publication of scientific results based in part on use of the |
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!! program. An acceptable form of acknowledgement is citation of |
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!! the article in which the program was described (Matthew |
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!! A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
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!! J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
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!! Parallel Simulation Engine for Molecular Dynamics," |
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!! J. Comput. Chem. 26, pp. 252-271 (2005)) |
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!! |
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!! 2. Redistributions of source code must retain the above copyright |
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!! notice, this list of conditions and the following disclaimer. |
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!! |
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!! 3. Redistributions in binary form must reproduce the above copyright |
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!! notice, this list of conditions and the following disclaimer in the |
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!! documentation and/or other materials provided with the |
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!! distribution. |
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!! |
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!! This software is provided "AS IS," without a warranty of any |
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!! kind. All express or implied conditions, representations and |
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!! warranties, including any implied warranty of merchantability, |
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!! fitness for a particular purpose or non-infringement, are hereby |
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!! excluded. The University of Notre Dame and its licensors shall not |
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!! be liable for any damages suffered by licensee as a result of |
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!! using, modifying or distributing the software or its |
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!! derivatives. In no event will the University of Notre Dame or its |
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!! licensors be liable for any lost revenue, profit or data, or for |
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!! direct, indirect, special, consequential, incidental or punitive |
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!! damages, however caused and regardless of the theory of liability, |
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!! arising out of the use of or inability to use software, even if the |
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!! University of Notre Dame has been advised of the possibility of |
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!! such damages. |
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!! |
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gezelter |
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!! This Module Calculates forces due to SSD potential and VDW interactions |
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!! [Chandra and Ichiye, J. Chem. Phys. 111, 2701 (1999)]. |
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!! This module contains the Public procedures: |
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!! Corresponds to the force field defined in ssd_FF.cpp |
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!! @author Charles F. Vardeman II |
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!! @author Matthew Meineke |
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chrisfen |
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!! @author Christopher Fennell |
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gezelter |
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!! @author J. Daniel Gezelter |
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gezelter |
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!! @version $Id: sticky.F90,v 1.7 2005-04-15 22:03:49 gezelter Exp $, $Date: 2005-04-15 22:03:49 $, $Name: not supported by cvs2svn $, $Revision: 1.7 $ |
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gezelter |
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gezelter |
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module sticky |
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gezelter |
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use force_globals |
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use definitions |
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gezelter |
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use atype_module |
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use vector_class |
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gezelter |
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use simulation |
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gezelter |
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use status |
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gezelter |
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#ifdef IS_MPI |
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use mpiSimulation |
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#endif |
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implicit none |
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PRIVATE |
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gezelter |
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public :: newStickyType |
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gezelter |
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public :: do_sticky_pair |
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chuckv |
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public :: destroyStickyTypes |
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gezelter |
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gezelter |
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type :: StickyList |
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integer :: c_ident |
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real( kind = dp ) :: w0 = 0.0_dp |
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real( kind = dp ) :: v0 = 0.0_dp |
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real( kind = dp ) :: v0p = 0.0_dp |
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real( kind = dp ) :: rl = 0.0_dp |
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real( kind = dp ) :: ru = 0.0_dp |
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real( kind = dp ) :: rlp = 0.0_dp |
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real( kind = dp ) :: rup = 0.0_dp |
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real( kind = dp ) :: rbig = 0.0_dp |
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end type StickyList |
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gezelter |
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gezelter |
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type(StickyList), dimension(:),allocatable :: StickyMap |
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gezelter |
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contains |
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gezelter |
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subroutine newStickyType(c_ident, w0, v0, v0p, rl, ru, rlp, rup, isError) |
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gezelter |
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gezelter |
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integer, intent(in) :: c_ident |
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integer, intent(inout) :: isError |
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real( kind = dp ), intent(in) :: w0, v0, v0p |
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real( kind = dp ), intent(in) :: rl, ru |
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real( kind = dp ), intent(in) :: rlp, rup |
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integer :: nATypes, myATID |
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gezelter |
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gezelter |
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gezelter |
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isError = 0 |
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myATID = getFirstMatchingElement(atypes, "c_ident", c_ident) |
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gezelter |
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gezelter |
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!! Be simple-minded and assume that we need a StickyMap that |
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!! is the same size as the total number of atom types |
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if (.not.allocated(StickyMap)) then |
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nAtypes = getSize(atypes) |
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if (nAtypes == 0) then |
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isError = -1 |
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return |
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end if |
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if (.not. allocated(StickyMap)) then |
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allocate(StickyMap(nAtypes)) |
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endif |
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end if |
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if (myATID .gt. size(StickyMap)) then |
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isError = -1 |
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return |
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endif |
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! set the values for StickyMap for this atom type: |
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StickyMap(myATID)%c_ident = c_ident |
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gezelter |
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! we could pass all 5 parameters if we felt like it... |
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gezelter |
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gezelter |
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StickyMap(myATID)%w0 = w0 |
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StickyMap(myATID)%v0 = v0 |
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StickyMap(myATID)%v0p = v0p |
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StickyMap(myATID)%rl = rl |
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StickyMap(myATID)%ru = ru |
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StickyMap(myATID)%rlp = rlp |
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StickyMap(myATID)%rup = rup |
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gezelter |
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gezelter |
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if (StickyMap(myATID)%ru .gt. StickyMap(myATID)%rup) then |
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StickyMap(myATID)%rbig = StickyMap(myATID)%ru |
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gezelter |
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else |
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gezelter |
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StickyMap(myATID)%rbig = StickyMap(myATID)%rup |
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gezelter |
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endif |
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gezelter |
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gezelter |
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return |
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gezelter |
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end subroutine newStickyType |
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gezelter |
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subroutine do_sticky_pair(atom1, atom2, d, rij, r2, sw, vpair, fpair, & |
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pot, A, f, t, do_pot) |
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gezelter |
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gezelter |
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!! This routine does only the sticky portion of the SSD potential |
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!! [Chandra and Ichiye, J. Chem. Phys. 111, 2701 (1999)]. |
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!! The Lennard-Jones and dipolar interaction must be handled separately. |
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gezelter |
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gezelter |
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!! We assume that the rotation matrices have already been calculated |
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!! and placed in the A array. |
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!! i and j are pointers to the two SSD atoms |
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integer, intent(in) :: atom1, atom2 |
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real (kind=dp), intent(inout) :: rij, r2 |
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real (kind=dp), dimension(3), intent(in) :: d |
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real (kind=dp), dimension(3), intent(inout) :: fpair |
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real (kind=dp) :: pot, vpair, sw |
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real (kind=dp), dimension(9,nLocal) :: A |
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real (kind=dp), dimension(3,nLocal) :: f |
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real (kind=dp), dimension(3,nLocal) :: t |
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logical, intent(in) :: do_pot |
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real (kind=dp) :: xi, yi, zi, xj, yj, zj, xi2, yi2, zi2, xj2, yj2, zj2 |
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real (kind=dp) :: r3, r5, r6, s, sp, dsdr, dspdr |
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real (kind=dp) :: wi, wj, w, wip, wjp, wp |
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real (kind=dp) :: dwidx, dwidy, dwidz, dwjdx, dwjdy, dwjdz |
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real (kind=dp) :: dwipdx, dwipdy, dwipdz, dwjpdx, dwjpdy, dwjpdz |
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real (kind=dp) :: dwidux, dwiduy, dwiduz, dwjdux, dwjduy, dwjduz |
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real (kind=dp) :: dwipdux, dwipduy, dwipduz, dwjpdux, dwjpduy, dwjpduz |
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real (kind=dp) :: zif, zis, zjf, zjs, uglyi, uglyj |
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real (kind=dp) :: drdx, drdy, drdz |
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real (kind=dp) :: txi, tyi, tzi, txj, tyj, tzj |
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real (kind=dp) :: fxii, fyii, fzii, fxjj, fyjj, fzjj |
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real (kind=dp) :: fxij, fyij, fzij, fxji, fyji, fzji |
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real (kind=dp) :: fxradial, fyradial, fzradial |
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real (kind=dp) :: rijtest, rjitest |
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real (kind=dp) :: radcomxi, radcomyi, radcomzi |
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real (kind=dp) :: radcomxj, radcomyj, radcomzj |
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integer :: id1, id2 |
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gezelter |
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integer :: me1, me2 |
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gezelter |
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real (kind=dp) :: w0, v0, v0p, rl, ru, rlp, rup, rbig |
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gezelter |
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gezelter |
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if (.not.allocated(StickyMap)) then |
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gezelter |
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call handleError("sticky", "no StickyMap was present before first call of do_sticky_pair!") |
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gezelter |
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return |
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gezelter |
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end if |
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gezelter |
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gezelter |
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#ifdef IS_MPI |
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me1 = atid_Row(atom1) |
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me2 = atid_Col(atom2) |
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#else |
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me1 = atid(atom1) |
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me2 = atid(atom2) |
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#endif |
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if (me1.eq.me2) then |
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w0 = StickyMap(me1)%w0 |
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v0 = StickyMap(me1)%v0 |
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v0p = StickyMap(me1)%v0p |
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rl = StickyMap(me1)%rl |
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ru = StickyMap(me1)%ru |
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rlp = StickyMap(me1)%rlp |
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rup = StickyMap(me1)%rup |
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rbig = StickyMap(me1)%rbig |
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else |
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! This is silly, but if you want 2 sticky types in your |
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! simulation, we'll let you do it with the Lorentz- |
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! Berthelot mixing rules. |
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! (Warning: you'll be SLLLLLLLLLLLLLLLOOOOOOOOOOWWWWWWWWWWW) |
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rl = 0.5_dp * ( StickyMap(me1)%rl + StickyMap(me2)%rl ) |
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ru = 0.5_dp * ( StickyMap(me1)%ru + StickyMap(me2)%ru ) |
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rlp = 0.5_dp * ( StickyMap(me1)%rlp + StickyMap(me2)%rlp ) |
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rup = 0.5_dp * ( StickyMap(me1)%rup + StickyMap(me2)%rup ) |
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rbig = max(ru, rup) |
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w0 = sqrt( StickyMap(me1)%w0 * StickyMap(me2)%w0 ) |
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v0 = sqrt( StickyMap(me1)%v0 * StickyMap(me2)%v0 ) |
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v0p = sqrt( StickyMap(me1)%v0p * StickyMap(me2)%v0p ) |
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gezelter |
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endif |
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gezelter |
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if ( rij .LE. rbig ) then |
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gezelter |
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r3 = r2*rij |
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r5 = r3*r2 |
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drdx = d(1) / rij |
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drdy = d(2) / rij |
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drdz = d(3) / rij |
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#ifdef IS_MPI |
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! rotate the inter-particle separation into the two different |
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! body-fixed coordinate systems: |
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xi = A_row(1,atom1)*d(1) + A_row(2,atom1)*d(2) + A_row(3,atom1)*d(3) |
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yi = A_row(4,atom1)*d(1) + A_row(5,atom1)*d(2) + A_row(6,atom1)*d(3) |
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zi = A_row(7,atom1)*d(1) + A_row(8,atom1)*d(2) + A_row(9,atom1)*d(3) |
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! negative sign because this is the vector from j to i: |
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xj = -(A_Col(1,atom2)*d(1) + A_Col(2,atom2)*d(2) + A_Col(3,atom2)*d(3)) |
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yj = -(A_Col(4,atom2)*d(1) + A_Col(5,atom2)*d(2) + A_Col(6,atom2)*d(3)) |
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zj = -(A_Col(7,atom2)*d(1) + A_Col(8,atom2)*d(2) + A_Col(9,atom2)*d(3)) |
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#else |
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! rotate the inter-particle separation into the two different |
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! body-fixed coordinate systems: |
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xi = a(1,atom1)*d(1) + a(2,atom1)*d(2) + a(3,atom1)*d(3) |
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yi = a(4,atom1)*d(1) + a(5,atom1)*d(2) + a(6,atom1)*d(3) |
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zi = a(7,atom1)*d(1) + a(8,atom1)*d(2) + a(9,atom1)*d(3) |
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! negative sign because this is the vector from j to i: |
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xj = -(a(1,atom2)*d(1) + a(2,atom2)*d(2) + a(3,atom2)*d(3)) |
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yj = -(a(4,atom2)*d(1) + a(5,atom2)*d(2) + a(6,atom2)*d(3)) |
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zj = -(a(7,atom2)*d(1) + a(8,atom2)*d(2) + a(9,atom2)*d(3)) |
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#endif |
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xi2 = xi*xi |
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yi2 = yi*yi |
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zi2 = zi*zi |
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xj2 = xj*xj |
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yj2 = yj*yj |
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zj2 = zj*zj |
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gezelter |
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call calc_sw_fnc(rij, rl, ru, rlp, rup, s, sp, dsdr, dspdr) |
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gezelter |
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wi = 2.0d0*(xi2-yi2)*zi / r3 |
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wj = 2.0d0*(xj2-yj2)*zj / r3 |
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w = wi+wj |
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zif = zi/rij - 0.6d0 |
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zis = zi/rij + 0.8d0 |
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zjf = zj/rij - 0.6d0 |
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zjs = zj/rij + 0.8d0 |
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gezelter |
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wip = zif*zif*zis*zis - w0 |
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wjp = zjf*zjf*zjs*zjs - w0 |
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gezelter |
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wp = wip + wjp |
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gezelter |
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vpair = vpair + 0.5d0*(v0*s*w + v0p*sp*wp) |
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gezelter |
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if (do_pot) then |
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#ifdef IS_MPI |
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gezelter |
246 |
pot_row(atom1) = pot_row(atom1) + 0.25d0*(v0*s*w + v0p*sp*wp)*sw |
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pot_col(atom2) = pot_col(atom2) + 0.25d0*(v0*s*w + v0p*sp*wp)*sw |
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gezelter |
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#else |
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gezelter |
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pot = pot + 0.5d0*(v0*s*w + v0p*sp*wp)*sw |
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gezelter |
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#endif |
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endif |
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dwidx = 4.0d0*xi*zi/r3 - 6.0d0*xi*zi*(xi2-yi2)/r5 |
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dwidy = - 4.0d0*yi*zi/r3 - 6.0d0*yi*zi*(xi2-yi2)/r5 |
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dwidz = 2.0d0*(xi2-yi2)/r3 - 6.0d0*zi2*(xi2-yi2)/r5 |
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dwjdx = 4.0d0*xj*zj/r3 - 6.0d0*xj*zj*(xj2-yj2)/r5 |
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dwjdy = - 4.0d0*yj*zj/r3 - 6.0d0*yj*zj*(xj2-yj2)/r5 |
| 306 |
|
|
dwjdz = 2.0d0*(xj2-yj2)/r3 - 6.0d0*zj2*(xj2-yj2)/r5 |
| 307 |
|
|
|
| 308 |
|
|
uglyi = zif*zif*zis + zif*zis*zis |
| 309 |
|
|
uglyj = zjf*zjf*zjs + zjf*zjs*zjs |
| 310 |
|
|
|
| 311 |
|
|
dwipdx = -2.0d0*xi*zi*uglyi/r3 |
| 312 |
|
|
dwipdy = -2.0d0*yi*zi*uglyi/r3 |
| 313 |
|
|
dwipdz = 2.0d0*(1.0d0/rij - zi2/r3)*uglyi |
| 314 |
|
|
|
| 315 |
|
|
dwjpdx = -2.0d0*xj*zj*uglyj/r3 |
| 316 |
|
|
dwjpdy = -2.0d0*yj*zj*uglyj/r3 |
| 317 |
|
|
dwjpdz = 2.0d0*(1.0d0/rij - zj2/r3)*uglyj |
| 318 |
|
|
|
| 319 |
|
|
dwidux = 4.0d0*(yi*zi2 + 0.5d0*yi*(xi2-yi2))/r3 |
| 320 |
|
|
dwiduy = 4.0d0*(xi*zi2 - 0.5d0*xi*(xi2-yi2))/r3 |
| 321 |
|
|
dwiduz = - 8.0d0*xi*yi*zi/r3 |
| 322 |
|
|
|
| 323 |
|
|
dwjdux = 4.0d0*(yj*zj2 + 0.5d0*yj*(xj2-yj2))/r3 |
| 324 |
|
|
dwjduy = 4.0d0*(xj*zj2 - 0.5d0*xj*(xj2-yj2))/r3 |
| 325 |
|
|
dwjduz = - 8.0d0*xj*yj*zj/r3 |
| 326 |
|
|
|
| 327 |
|
|
dwipdux = 2.0d0*yi*uglyi/rij |
| 328 |
|
|
dwipduy = -2.0d0*xi*uglyi/rij |
| 329 |
|
|
dwipduz = 0.0d0 |
| 330 |
|
|
|
| 331 |
|
|
dwjpdux = 2.0d0*yj*uglyj/rij |
| 332 |
|
|
dwjpduy = -2.0d0*xj*uglyj/rij |
| 333 |
|
|
dwjpduz = 0.0d0 |
| 334 |
|
|
|
| 335 |
|
|
! do the torques first since they are easy: |
| 336 |
|
|
! remember that these are still in the body fixed axes |
| 337 |
|
|
|
| 338 |
gezelter |
246 |
txi = 0.5d0*(v0*s*dwidux + v0p*sp*dwipdux)*sw |
| 339 |
|
|
tyi = 0.5d0*(v0*s*dwiduy + v0p*sp*dwipduy)*sw |
| 340 |
|
|
tzi = 0.5d0*(v0*s*dwiduz + v0p*sp*dwipduz)*sw |
| 341 |
gezelter |
115 |
|
| 342 |
gezelter |
246 |
txj = 0.5d0*(v0*s*dwjdux + v0p*sp*dwjpdux)*sw |
| 343 |
|
|
tyj = 0.5d0*(v0*s*dwjduy + v0p*sp*dwjpduy)*sw |
| 344 |
|
|
tzj = 0.5d0*(v0*s*dwjduz + v0p*sp*dwjpduz)*sw |
| 345 |
gezelter |
115 |
|
| 346 |
|
|
! go back to lab frame using transpose of rotation matrix: |
| 347 |
|
|
|
| 348 |
|
|
#ifdef IS_MPI |
| 349 |
|
|
t_Row(1,atom1) = t_Row(1,atom1) + a_Row(1,atom1)*txi + & |
| 350 |
|
|
a_Row(4,atom1)*tyi + a_Row(7,atom1)*tzi |
| 351 |
|
|
t_Row(2,atom1) = t_Row(2,atom1) + a_Row(2,atom1)*txi + & |
| 352 |
|
|
a_Row(5,atom1)*tyi + a_Row(8,atom1)*tzi |
| 353 |
|
|
t_Row(3,atom1) = t_Row(3,atom1) + a_Row(3,atom1)*txi + & |
| 354 |
|
|
a_Row(6,atom1)*tyi + a_Row(9,atom1)*tzi |
| 355 |
|
|
|
| 356 |
|
|
t_Col(1,atom2) = t_Col(1,atom2) + a_Col(1,atom2)*txj + & |
| 357 |
|
|
a_Col(4,atom2)*tyj + a_Col(7,atom2)*tzj |
| 358 |
|
|
t_Col(2,atom2) = t_Col(2,atom2) + a_Col(2,atom2)*txj + & |
| 359 |
|
|
a_Col(5,atom2)*tyj + a_Col(8,atom2)*tzj |
| 360 |
|
|
t_Col(3,atom2) = t_Col(3,atom2) + a_Col(3,atom2)*txj + & |
| 361 |
|
|
a_Col(6,atom2)*tyj + a_Col(9,atom2)*tzj |
| 362 |
|
|
#else |
| 363 |
|
|
t(1,atom1) = t(1,atom1) + a(1,atom1)*txi + a(4,atom1)*tyi + a(7,atom1)*tzi |
| 364 |
|
|
t(2,atom1) = t(2,atom1) + a(2,atom1)*txi + a(5,atom1)*tyi + a(8,atom1)*tzi |
| 365 |
|
|
t(3,atom1) = t(3,atom1) + a(3,atom1)*txi + a(6,atom1)*tyi + a(9,atom1)*tzi |
| 366 |
|
|
|
| 367 |
|
|
t(1,atom2) = t(1,atom2) + a(1,atom2)*txj + a(4,atom2)*tyj + a(7,atom2)*tzj |
| 368 |
|
|
t(2,atom2) = t(2,atom2) + a(2,atom2)*txj + a(5,atom2)*tyj + a(8,atom2)*tzj |
| 369 |
|
|
t(3,atom2) = t(3,atom2) + a(3,atom2)*txj + a(6,atom2)*tyj + a(9,atom2)*tzj |
| 370 |
|
|
#endif |
| 371 |
|
|
! Now, on to the forces: |
| 372 |
|
|
|
| 373 |
|
|
! first rotate the i terms back into the lab frame: |
| 374 |
|
|
|
| 375 |
gezelter |
246 |
radcomxi = (v0*s*dwidx+v0p*sp*dwipdx)*sw |
| 376 |
|
|
radcomyi = (v0*s*dwidy+v0p*sp*dwipdy)*sw |
| 377 |
|
|
radcomzi = (v0*s*dwidz+v0p*sp*dwipdz)*sw |
| 378 |
gezelter |
115 |
|
| 379 |
gezelter |
246 |
radcomxj = (v0*s*dwjdx+v0p*sp*dwjpdx)*sw |
| 380 |
|
|
radcomyj = (v0*s*dwjdy+v0p*sp*dwjpdy)*sw |
| 381 |
|
|
radcomzj = (v0*s*dwjdz+v0p*sp*dwjpdz)*sw |
| 382 |
gezelter |
115 |
|
| 383 |
|
|
#ifdef IS_MPI |
| 384 |
|
|
fxii = a_Row(1,atom1)*(radcomxi) + & |
| 385 |
|
|
a_Row(4,atom1)*(radcomyi) + & |
| 386 |
|
|
a_Row(7,atom1)*(radcomzi) |
| 387 |
|
|
fyii = a_Row(2,atom1)*(radcomxi) + & |
| 388 |
|
|
a_Row(5,atom1)*(radcomyi) + & |
| 389 |
|
|
a_Row(8,atom1)*(radcomzi) |
| 390 |
|
|
fzii = a_Row(3,atom1)*(radcomxi) + & |
| 391 |
|
|
a_Row(6,atom1)*(radcomyi) + & |
| 392 |
|
|
a_Row(9,atom1)*(radcomzi) |
| 393 |
|
|
|
| 394 |
|
|
fxjj = a_Col(1,atom2)*(radcomxj) + & |
| 395 |
|
|
a_Col(4,atom2)*(radcomyj) + & |
| 396 |
|
|
a_Col(7,atom2)*(radcomzj) |
| 397 |
|
|
fyjj = a_Col(2,atom2)*(radcomxj) + & |
| 398 |
|
|
a_Col(5,atom2)*(radcomyj) + & |
| 399 |
|
|
a_Col(8,atom2)*(radcomzj) |
| 400 |
|
|
fzjj = a_Col(3,atom2)*(radcomxj)+ & |
| 401 |
|
|
a_Col(6,atom2)*(radcomyj) + & |
| 402 |
|
|
a_Col(9,atom2)*(radcomzj) |
| 403 |
|
|
#else |
| 404 |
|
|
fxii = a(1,atom1)*(radcomxi) + & |
| 405 |
|
|
a(4,atom1)*(radcomyi) + & |
| 406 |
|
|
a(7,atom1)*(radcomzi) |
| 407 |
|
|
fyii = a(2,atom1)*(radcomxi) + & |
| 408 |
|
|
a(5,atom1)*(radcomyi) + & |
| 409 |
|
|
a(8,atom1)*(radcomzi) |
| 410 |
|
|
fzii = a(3,atom1)*(radcomxi) + & |
| 411 |
|
|
a(6,atom1)*(radcomyi) + & |
| 412 |
|
|
a(9,atom1)*(radcomzi) |
| 413 |
|
|
|
| 414 |
|
|
fxjj = a(1,atom2)*(radcomxj) + & |
| 415 |
|
|
a(4,atom2)*(radcomyj) + & |
| 416 |
|
|
a(7,atom2)*(radcomzj) |
| 417 |
|
|
fyjj = a(2,atom2)*(radcomxj) + & |
| 418 |
|
|
a(5,atom2)*(radcomyj) + & |
| 419 |
|
|
a(8,atom2)*(radcomzj) |
| 420 |
|
|
fzjj = a(3,atom2)*(radcomxj)+ & |
| 421 |
|
|
a(6,atom2)*(radcomyj) + & |
| 422 |
|
|
a(9,atom2)*(radcomzj) |
| 423 |
|
|
#endif |
| 424 |
|
|
|
| 425 |
|
|
fxij = -fxii |
| 426 |
|
|
fyij = -fyii |
| 427 |
|
|
fzij = -fzii |
| 428 |
|
|
|
| 429 |
|
|
fxji = -fxjj |
| 430 |
|
|
fyji = -fyjj |
| 431 |
|
|
fzji = -fzjj |
| 432 |
|
|
|
| 433 |
|
|
! now assemble these with the radial-only terms: |
| 434 |
|
|
|
| 435 |
gezelter |
246 |
fxradial = 0.5d0*(v0*dsdr*drdx*w + v0p*dspdr*drdx*wp + fxii + fxji) |
| 436 |
|
|
fyradial = 0.5d0*(v0*dsdr*drdy*w + v0p*dspdr*drdy*wp + fyii + fyji) |
| 437 |
|
|
fzradial = 0.5d0*(v0*dsdr*drdz*w + v0p*dspdr*drdz*wp + fzii + fzji) |
| 438 |
gezelter |
115 |
|
| 439 |
|
|
#ifdef IS_MPI |
| 440 |
|
|
f_Row(1,atom1) = f_Row(1,atom1) + fxradial |
| 441 |
|
|
f_Row(2,atom1) = f_Row(2,atom1) + fyradial |
| 442 |
|
|
f_Row(3,atom1) = f_Row(3,atom1) + fzradial |
| 443 |
|
|
|
| 444 |
|
|
f_Col(1,atom2) = f_Col(1,atom2) - fxradial |
| 445 |
|
|
f_Col(2,atom2) = f_Col(2,atom2) - fyradial |
| 446 |
|
|
f_Col(3,atom2) = f_Col(3,atom2) - fzradial |
| 447 |
|
|
#else |
| 448 |
|
|
f(1,atom1) = f(1,atom1) + fxradial |
| 449 |
|
|
f(2,atom1) = f(2,atom1) + fyradial |
| 450 |
|
|
f(3,atom1) = f(3,atom1) + fzradial |
| 451 |
|
|
|
| 452 |
|
|
f(1,atom2) = f(1,atom2) - fxradial |
| 453 |
|
|
f(2,atom2) = f(2,atom2) - fyradial |
| 454 |
|
|
f(3,atom2) = f(3,atom2) - fzradial |
| 455 |
|
|
#endif |
| 456 |
|
|
|
| 457 |
|
|
#ifdef IS_MPI |
| 458 |
|
|
id1 = AtomRowToGlobal(atom1) |
| 459 |
|
|
id2 = AtomColToGlobal(atom2) |
| 460 |
|
|
#else |
| 461 |
|
|
id1 = atom1 |
| 462 |
|
|
id2 = atom2 |
| 463 |
|
|
#endif |
| 464 |
gezelter |
507 |
|
| 465 |
gezelter |
115 |
if (molMembershipList(id1) .ne. molMembershipList(id2)) then |
| 466 |
gezelter |
507 |
|
| 467 |
gezelter |
115 |
fpair(1) = fpair(1) + fxradial |
| 468 |
|
|
fpair(2) = fpair(2) + fyradial |
| 469 |
|
|
fpair(3) = fpair(3) + fzradial |
| 470 |
gezelter |
507 |
|
| 471 |
gezelter |
115 |
endif |
| 472 |
|
|
endif |
| 473 |
|
|
end subroutine do_sticky_pair |
| 474 |
|
|
|
| 475 |
|
|
!! calculates the switching functions and their derivatives for a given |
| 476 |
gezelter |
246 |
subroutine calc_sw_fnc(r, rl, ru, rlp, rup, s, sp, dsdr, dspdr) |
| 477 |
gezelter |
507 |
|
| 478 |
gezelter |
246 |
real (kind=dp), intent(in) :: r, rl, ru, rlp, rup |
| 479 |
gezelter |
115 |
real (kind=dp), intent(inout) :: s, sp, dsdr, dspdr |
| 480 |
gezelter |
507 |
|
| 481 |
gezelter |
115 |
! distances must be in angstroms |
| 482 |
gezelter |
507 |
|
| 483 |
gezelter |
246 |
if (r.lt.rl) then |
| 484 |
gezelter |
115 |
s = 1.0d0 |
| 485 |
|
|
dsdr = 0.0d0 |
| 486 |
gezelter |
246 |
elseif (r.gt.ru) then |
| 487 |
gezelter |
115 |
s = 0.0d0 |
| 488 |
|
|
dsdr = 0.0d0 |
| 489 |
|
|
else |
| 490 |
gezelter |
246 |
s = ((ru + 2.0d0*r - 3.0d0*rl) * (ru-r)**2) / & |
| 491 |
|
|
((ru - rl)**3) |
| 492 |
|
|
dsdr = 6.0d0*(r-ru)*(r-rl)/((ru - rl)**3) |
| 493 |
gezelter |
115 |
endif |
| 494 |
|
|
|
| 495 |
gezelter |
246 |
if (r.lt.rlp) then |
| 496 |
gezelter |
115 |
sp = 1.0d0 |
| 497 |
|
|
dspdr = 0.0d0 |
| 498 |
gezelter |
246 |
elseif (r.gt.rup) then |
| 499 |
gezelter |
115 |
sp = 0.0d0 |
| 500 |
|
|
dspdr = 0.0d0 |
| 501 |
|
|
else |
| 502 |
gezelter |
246 |
sp = ((rup + 2.0d0*r - 3.0d0*rlp) * (rup-r)**2) / & |
| 503 |
|
|
((rup - rlp)**3) |
| 504 |
|
|
dspdr = 6.0d0*(r-rup)*(r-rlp)/((rup - rlp)**3) |
| 505 |
gezelter |
115 |
endif |
| 506 |
gezelter |
507 |
|
| 507 |
gezelter |
115 |
return |
| 508 |
|
|
end subroutine calc_sw_fnc |
| 509 |
chuckv |
492 |
|
| 510 |
|
|
subroutine destroyStickyTypes() |
| 511 |
|
|
if(allocated(StickyMap)) deallocate(StickyMap) |
| 512 |
|
|
end subroutine destroyStickyTypes |
| 513 |
gezelter |
246 |
end module sticky |
