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root/OpenMD/trunk/forceFields/element.txt
Revision: 2052
Committed: Fri Jan 9 19:06:35 2015 UTC (10 years, 8 months ago) by gezelter
Content type: text/plain
File size: 11458 byte(s)
Log Message:
Updating Hydrogen Bonding structures, and selection syntax to include molecule selections:

File Contents

# User Rev Content
1 tim 760 ##############################################################################
2     # #
3     # Open Babel file: element.txt #
4     # #
5 gezelter 2052 # Some portions Copyright (c) 2001-2009 Geoffrey R. Hutchison #
6 tim 760 # Part of the Open Babel package, under the GNU General Public License (GPL)#
7     # #
8     # Created from the Blue Obelisk Cheminformatics Data Repository #
9     # Direct Source: http://www.blueobelisk.org/ #
10     # http://www.blueobelisk.org/repos/blueobelisk/elements.xml #
11     # (includes furhter bibliographic citation information) #
12     # #
13 gezelter 2052 # Allred and Rochow Electronegativity from: #
14     # http://www.hull.ac.uk/chemistry/electroneg.php?type=Allred-Rochow #
15     # #
16 tim 760 # Columns represent: (used by data.cpp:OBElementTable and OBElement) #
17     # - atomic number (used as an index to the vector as well) #
18     # - elemental symbol #
19 gezelter 2052 # - Allred and Rochow electronegativity 0.0 if unknown #
20 tim 760 # - covalent radii (in Angstrom) 1.6 if unknown #
21 gezelter 2052 # from http://dx.doi.org/10.1039/b801115j #
22 tim 760 # - "bond order" radii -- ignored, but included for compatibility #
23     # - van der Waals radii (in Angstrom) 2.0 if unknown #
24 gezelter 2052 # from http://dx.doi.org/10.1021/jp8111556 #
25 tim 760 # - maximum bond valence 6 if unknown #
26     # - IUPAC recommended atomic masses (in amu) #
27     # - Pauling electronegativity 0.0 if unknown #
28     # - ionization potential (in eV) 0.0 if unknown #
29     # - electron affinity (in eV) 0.0 if unknown #
30     # - RGB values (defaults for visualization) #
31     # - element name (in English) #
32     # #
33     ##############################################################################
34 gezelter 2052 #Num Symb ARENeg RCov RBO RVdW MaxBnd Mass ElNeg. Ionization ElAffinity Red Green Blue Name
35     0 Xx 0.00 0.00 0.00 0.00 0 0 0.00 0 0 0.07 0.50 0.70 Dummy
36     1 H 2.20 0.31 0.31 1.10 1 1.00794 2.20 13.5984 0.75420375 0.75 0.75 0.75 Hydrogen
37     2 He 0.00 0.28 0.28 1.40 0 4.002602 0.00 24.5874 0 0.85 1.00 1.00 Helium
38     3 Li 0.97 1.28 1.28 1.81 1 6.941 0.98 5.3917 0.618049 0.80 0.50 1.00 Lithium
39     4 Be 1.47 0.96 0.96 1.53 2 9.012182 1.57 9.3227 0 0.76 1.00 0.00 Beryllium
40     5 B 2.01 0.84 0.84 1.92 4 10.811 2.04 8.298 0.279723 1.00 0.71 0.71 Boron
41     6 C 2.50 0.76 0.76 1.70 4 12.0107 2.55 11.2603 1.262118 0.40 0.40 0.40 Carbon
42     7 N 3.07 0.71 0.71 1.55 4 14.0067 3.04 14.5341 -0.07 0.05 0.05 1.00 Nitrogen
43     8 O 3.50 0.66 0.66 1.52 2 15.9994 3.44 13.6181 1.461112 1.00 0.05 0.05 Oxygen
44     9 F 4.10 0.57 0.57 1.47 1 18.9984032 3.98 17.4228 3.4011887 0.50 0.70 1.00 Fluorine
45     10 Ne 0.00 0.58 0.58 1.54 0 20.1797 0.00 21.5645 0 0.70 0.89 0.96 Neon
46     11 Na 1.01 1.66 1.66 2.27 1 22.98977 0.93 5.1391 0.547926 0.67 0.36 0.95 Sodium
47     12 Mg 1.23 1.41 1.41 1.73 2 24.3050 1.31 7.6462 0 0.54 1.00 0.00 Magnesium
48     13 Al 1.47 1.21 1.21 1.84 6 26.981538 1.61 5.9858 0.43283 0.75 0.65 0.65 Aluminium
49     14 Si 1.74 1.11 1.11 2.10 6 28.0855 1.90 8.1517 1.389521 0.50 0.60 0.60 Silicon
50     15 P 2.06 1.07 1.07 1.80 6 30.973761 2.19 10.4867 0.7465 1.00 0.50 0.00 Phosphorus
51     16 S 2.44 1.05 1.05 1.80 6 32.065 2.58 10.36 2.0771029 0.70 0.70 0.00 Sulfur
52     17 Cl 2.83 1.02 1.02 1.75 1 35.453 3.16 12.9676 3.612724 0.12 0.94 0.12 Chlorine
53     18 Ar 0.00 1.06 1.06 1.88 0 39.948 0.00 15.7596 0 0.50 0.82 0.89 Argon
54     19 K 0.91 2.03 2.03 2.75 1 39.0983 0.82 4.3407 0.501459 0.56 0.25 0.83 Potassium
55     20 Ca 1.04 1.76 1.76 2.31 2 40.078 1.00 6.1132 0.02455 0.24 1.00 0.00 Calcium
56     21 Sc 1.20 1.70 1.70 2.30 6 44.95591 1.36 6.5615 0.188 0.90 0.90 0.90 Scandium
57     22 Ti 1.32 1.60 1.60 2.15 6 47.867 1.54 6.8281 0.084 0.75 0.76 0.78 Titanium
58     23 V 1.45 1.53 1.53 2.05 6 50.9415 1.63 6.7462 0.525 0.65 0.65 0.67 Vanadium
59     24 Cr 1.56 1.39 1.39 2.05 6 51.9961 1.66 6.7665 0.67584 0.54 0.60 0.78 Chromium
60     25 Mn 1.60 1.39 1.39 2.05 8 54.938049 1.55 7.434 0 0.61 0.48 0.78 Manganese
61     26 Fe 1.64 1.32 1.32 2.05 6 55.845 1.83 7.9024 0.151 0.88 0.40 0.20 Iron
62     27 Co 1.70 1.26 1.26 2.00 6 58.9332 1.88 7.881 0.6633 0.94 0.56 0.63 Cobalt
63     28 Ni 1.75 1.24 1.24 2.00 6 58.6934 1.91 7.6398 1.15716 0.31 0.82 0.31 Nickel
64     29 Cu 1.75 1.32 1.32 2.00 6 63.546 1.90 7.7264 1.23578 0.78 0.50 0.20 Copper
65     30 Zn 1.66 1.22 1.22 2.10 6 65.38 1.65 9.3942 0 0.49 0.50 0.69 Zinc
66     31 Ga 1.82 1.22 1.22 1.87 3 69.723 1.81 5.9993 0.41 0.76 0.56 0.56 Gallium
67     32 Ge 2.02 1.20 1.20 2.11 4 72.64 2.01 7.8994 1.232712 0.40 0.56 0.56 Germanium
68     33 As 2.20 1.19 1.19 1.85 3 74.92160 2.18 9.7886 0.814 0.74 0.50 0.89 Arsenic
69     34 Se 2.48 1.20 1.20 1.90 2 78.96 2.55 9.7524 2.02067 1.00 0.63 0.00 Selenium
70     35 Br 2.74 1.20 1.20 1.83 1 79.904 2.96 11.8138 3.363588 0.65 0.16 0.16 Bromine
71     36 Kr 0.00 1.16 1.16 2.02 0 83.798 3.00 13.9996 0 0.36 0.72 0.82 Krypton
72     37 Rb 0.89 2.20 2.20 3.03 1 85.4678 0.82 4.1771 0.485916 0.44 0.18 0.69 Rubidium
73     38 Sr 0.99 1.95 1.95 2.49 2 87.62 0.95 5.6949 0.05206 0.00 1.00 0.00 Strontium
74     39 Y 1.11 1.90 1.90 2.40 6 88.90585 1.22 6.2173 0.307 0.58 1.00 1.00 Yttrium
75     40 Zr 1.22 1.75 1.75 2.30 6 91.224 1.33 6.6339 0.426 0.58 0.88 0.88 Zirconium
76     41 Nb 1.23 1.64 1.64 2.15 6 92.90638 1.60 6.7589 0.893 0.45 0.76 0.79 Niobium
77     42 Mo 1.30 1.54 1.54 2.10 6 95.96 2.16 7.0924 0.7472 0.33 0.71 0.71 Molybdenum
78     43 Tc 1.36 1.47 1.47 2.05 6 98 1.90 7.28 0.55 0.23 0.62 0.62 Technetium
79     44 Ru 1.42 1.46 1.46 2.05 6 101.07 2.20 7.3605 1.04638 0.14 0.56 0.56 Ruthenium
80     45 Rh 1.45 1.42 1.42 2.00 6 102.90550 2.28 7.4589 1.14289 0.04 0.49 0.55 Rhodium
81     46 Pd 1.35 1.39 1.39 2.05 6 106.42 2.20 8.3369 0.56214 0.00 0.41 0.52 Palladium
82     47 Ag 1.42 1.45 1.45 2.10 6 107.8682 1.93 7.5762 1.30447 0.88 0.88 1.00 Silver
83     48 Cd 1.46 1.44 1.44 2.20 6 112.411 1.69 8.9938 0 1.00 0.85 0.56 Cadmium
84     49 In 1.49 1.42 1.42 2.20 3 114.818 1.78 5.7864 0.404 0.65 0.46 0.45 Indium
85     50 Sn 1.72 1.39 1.39 1.93 4 118.701 1.96 7.3439 1.112066 0.40 0.50 0.50 Tin
86     51 Sb 1.82 1.39 1.39 2.17 3 121.760 2.05 8.6084 1.047401 0.62 0.39 0.71 Antimony
87     52 Te 2.01 1.38 1.38 2.06 2 127.60 2.10 9.0096 1.970875 0.83 0.48 0.00 Tellurium
88     53 I 2.21 1.39 1.39 1.98 1 126.90447 2.66 10.4513 3.059038 0.58 0.00 0.58 Iodine
89     54 Xe 0.00 1.40 1.40 2.16 0 131.293 2.60 12.1298 0 0.26 0.62 0.69 Xenon
90     55 Cs 0.86 2.44 2.44 3.43 1 132.90545 0.79 3.8939 0.471626 0.34 0.09 0.56 Caesium
91     56 Ba 0.97 2.15 2.15 2.68 2 137.327 0.89 5.2117 0.14462 0.00 0.79 0.00 Barium
92     57 La 1.08 2.07 2.07 2.50 12 138.9055 1.10 5.5769 0.47 0.44 0.83 1.00 Lanthanum
93     58 Ce 0.00 2.04 2.04 2.48 6 140.116 1.12 5.5387 0.5 1.00 1.00 0.78 Cerium
94     59 Pr 0.00 2.03 2.03 2.47 6 140.90765 1.13 5.473 0.5 0.85 1.00 0.78 Praseodymium
95     60 Nd 0.00 2.01 2.01 2.45 6 144.24 1.14 5.525 0.5 0.78 1.00 0.78 Neodymium
96     61 Pm 0.00 1.99 1.99 2.43 6 145 0.00 5.582 0.5 0.64 1.00 0.78 Promethium
97     62 Sm 0.00 1.98 1.98 2.42 6 150.36 1.17 5.6437 0.5 0.56 1.00 0.78 Samarium
98     63 Eu 0.00 1.98 1.98 2.40 6 151.964 0.00 5.6704 0.5 0.38 1.00 0.78 Europium
99     64 Gd 0.00 1.96 1.96 2.38 6 157.25 1.20 6.1498 0.5 0.27 1.00 0.78 Gadolinium
100     65 Tb 0.00 1.94 1.94 2.37 6 158.92534 0.00 5.8638 0.5 0.19 1.00 0.78 Terbium
101     66 Dy 0.00 1.92 1.92 2.35 6 162.500 1.22 5.9389 0.5 0.12 1.00 0.78 Dysprosium
102     67 Ho 0.00 1.92 1.92 2.33 6 164.93032 1.23 6.0215 0.5 0.00 1.00 0.61 Holmium
103     68 Er 0.00 1.89 1.89 2.32 6 167.259 1.24 6.1077 0.5 0.00 0.90 0.46 Erbium
104     69 Tm 0.00 1.90 1.90 2.30 6 168.93421 1.25 6.1843 0.5 0.00 0.83 0.32 Thulium
105     70 Yb 0.00 1.87 1.87 2.28 6 173.054 0.00 6.2542 0.5 0.00 0.75 0.22 Ytterbium
106     71 Lu 0.00 1.87 1.87 2.27 6 174.9668 1.27 5.4259 0.5 0.00 0.67 0.14 Lutetium
107     72 Hf 1.23 1.75 1.75 2.25 6 178.49 1.30 6.8251 0 0.30 0.76 1.00 Hafnium
108     73 Ta 1.33 1.70 1.70 2.20 6 180.9479 1.50 7.5496 0.322 0.30 0.65 1.00 Tantalum
109     74 W 1.40 1.62 1.62 2.10 6 183.84 2.36 7.864 0.815 0.13 0.58 0.84 Tungsten
110     75 Re 1.46 1.51 1.51 2.05 6 186.207 1.90 7.8335 0.15 0.15 0.49 0.67 Rhenium
111     76 Os 1.52 1.44 1.44 2.00 6 190.23 2.20 8.4382 1.0778 0.15 0.40 0.59 Osmium
112     77 Ir 1.55 1.41 1.41 2.00 6 192.217 2.20 8.967 1.56436 0.09 0.33 0.53 Iridium
113     78 Pt 1.44 1.36 1.36 2.05 6 195.078 2.28 8.9588 2.1251 0.96 0.93 0.82 Platinum
114     79 Au 1.42 1.36 1.36 2.10 6 196.96655 2.54 9.2255 2.30861 0.80 0.82 0.12 Gold
115     80 Hg 1.44 1.32 1.32 2.05 6 200.59 2.00 10.4375 0 0.71 0.71 0.76 Mercury
116     81 Tl 1.44 1.45 1.45 1.96 3 204.3833 1.62 6.1082 0.377 0.65 0.33 0.30 Thallium
117     82 Pb 1.55 1.46 1.46 2.02 4 207.2 2.33 7.4167 0.364 0.34 0.35 0.38 Lead
118     83 Bi 1.67 1.48 1.48 2.07 3 208.98040 2.02 7.2855 0.942363 0.62 0.31 0.71 Bismuth
119     84 Po 1.76 1.40 1.40 1.97 2 209 2.00 8.414 1.9 0.67 0.36 0.00 Polonium
120     85 At 1.90 1.50 1.50 2.02 1 210 2.20 0 2.8 0.46 0.31 0.27 Astatine
121     86 Rn 0.00 1.50 1.50 2.20 0 222 0.00 10.7485 0 0.26 0.51 0.59 Radon
122     87 Fr 0.00 2.60 2.60 3.48 1 223 0.70 4.0727 0 0.26 0.00 0.40 Francium
123     88 Ra 0.00 2.21 2.21 2.83 2 226 0.90 5.2784 0 0.00 0.49 0.00 Radium
124     89 Ac 0.00 2.15 2.15 2.00 6 227 1.10 5.17 0 0.44 0.67 0.98 Actinium
125     90 Th 0.00 2.06 2.06 2.40 6 232.0381 1.30 6.3067 0 0.00 0.73 1.00 Thorium
126     91 Pa 0.00 2.00 2.00 2.00 6 231.03588 1.50 5.89 0 0.00 0.63 1.00 Protactinium
127     92 U 0.00 1.96 1.96 2.30 6 238.02891 1.38 6.1941 0 0.00 0.56 1.00 Uranium
128     93 Np 0.00 1.90 1.90 2.00 6 237.05 1.36 6.2657 0 0.00 0.50 1.00 Neptunium
129     94 Pu 0.00 1.87 1.87 2.00 6 244.06 1.28 6.026 0 0.00 0.42 1.00 Plutonium
130     95 Am 0.00 1.80 1.80 2.00 6 243.06 1.30 5.9738 0 0.33 0.36 0.95 Americium
131     96 Cm 0.00 1.69 1.69 2.00 6 247.07 1.30 5.9914 0 0.47 0.36 0.89 Curium
132     97 Bk 0.00 1.60 1.60 2.00 6 247.07 1.30 6.1979 0 0.54 0.31 0.89 Berkelium
133     98 Cf 0.00 1.60 1.60 2.00 6 251.08 1.30 6.2817 0 0.63 0.21 0.83 Californium
134     99 Es 0.00 1.60 1.60 2.00 6 252.08 1.30 6.42 0 0.70 0.12 0.83 Einsteinium
135     100 Fm 0.00 1.60 1.60 2.00 6 257.10 1.30 6.5 0 0.70 0.12 0.73 Fermium
136     101 Md 0.00 1.60 1.60 2.00 6 258.10 1.30 6.58 0 0.70 0.05 0.65 Mendelevium
137     102 No 0.00 1.60 1.60 2.00 6 259.10 1.30 6.65 0 0.74 0.05 0.53 Nobelium
138     103 Lr 0.00 1.60 1.60 2.00 6 262.11 0.00 4.9 0 0.78 0.00 0.40 Lawrencium
139     104 Rf 0.00 1.60 1.60 2.00 6 265.12 0.00 6 0 0.80 0.00 0.35 Rutherfordium
140     105 Db 0.00 1.60 1.60 2.00 6 268.13 0.00 0 0 0.82 0.00 0.31 Dubnium
141     106 Sg 0.00 1.60 1.60 2.00 6 271.13 0.00 0 0 0.85 0.00 0.27 Seaborgium
142     107 Bh 0.00 1.60 1.60 2.00 6 270 0.00 0 0 0.88 0.00 0.22 Bohrium
143     108 Hs 0.00 1.60 1.60 2.00 6 277.15 0.00 0 0 0.90 0.00 0.18 Hassium
144     109 Mt 0.00 1.60 1.60 2.00 6 276.15 0.00 0 0 0.92 0.00 0.15 Meitnerium
145     110 Ds 0.00 1.60 1.60 2.00 6 281.16 0.00 0 0 0.93 0.00 0.14 Darmstadtium
146     111 Rg 0.00 1.60 1.60 2.00 6 280.16 0.00 0 0 0.94 0.00 0.13 Roentgenium
147     112 Cn 0.00 1.60 1.60 2.00 6 285.17 0.00 0 0 0.95 0.00 0.12 Copernicium
148     113 Uut 0.00 1.60 1.60 2.00 6 284.18 0.00 0 0 0.96 0.00 0.11 Ununtrium
149     114 Fl 0.00 1.60 1.60 2.00 6 289.19 0.00 0 0 0.97 0.00 0.10 Flerovium
150     115 Uup 0.00 1.60 1.60 2.00 6 288.19 0.00 0 0 0.98 0.00 0.09 Ununpentium
151     116 Lv 0.00 1.60 1.60 2.00 6 293 0.00 0 0 0.99 0.00 0.08 Livermorium
152     117 Uuh 0.00 1.60 1.60 2.00 6 294 0.00 0 0 0.99 0.00 0.07 Ununseptium
153     118 Uuh 0.00 1.60 1.60 2.00 6 294 0.00 0 0 0.99 0.00 0.06 Ununoctium