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root/OpenMD/trunk/forceFields/Amber.frc
Revision: 2063
Committed: Tue Mar 3 16:45:34 2015 UTC (10 years, 6 months ago) by gezelter
File size: 101264 byte(s)
Log Message:
Fixed a force field atom problem

File Contents

# User Rev Content
1 gezelter 1278 begin Options
2 cli2 1289 Name "Amber"
3     vdW-14-scale 0.5
4     electrostatic-14-scale 0.83333333333333333
5 gezelter 1278 end Options
6 gezelter 1270
7     begin BaseAtomTypes
8     //number name mass (amu)
9 cli2 1289 C 12.01
10     N 14.01
11     O 16.0
12     S 32.06
13     P 30.97
14     H 1.008
15 gezelter 1270 Li+ 6.940
16     Na+ 22.990
17     K+ 39.100
18     Rb+ 85.470
19     Cs+ 132.910
20 gezelter 1278 Mg+2 24.305
21     Ca+2 40.080
22     Zn+2 65.400
23 gezelter 1270 Cl- 35.450
24 kstocke1 1526 F- 19.000
25     Br- 79.900
26     I- 126.900
27 gezelter 1363 EP 0.0
28 gezelter 1270 end BaseAtomTypes
29    
30    
31     begin AtomTypes
32     //name baseatomtype
33 cli2 1289 CT C
34     CA C
35     CM C
36     CC C
37     CV C
38     CW C
39     CR C
40     CB C
41     C* C
42     CN C
43     CK C
44     CQ C
45     NA N
46     NB N
47     NC N
48     N* N
49     N2 N
50     N3 N
51     OW O
52     OH O
53     OS O
54     O2 O
55     SH S
56     HW H
57     HO H
58     HS H
59     HA H
60     HC H
61     H1 H
62     H2 H
63     H3 H
64     HP H
65     H4 H
66     H5 H
67 gezelter 1270 GLY-N N
68     GLY-CA CT
69     GLY-C C
70     GLY-HN H
71     GLY-O O
72     GLY-HA H1
73     ALA-N N
74     ALA-CA CT
75     ALA-C C
76     ALA-HN H
77     ALA-O O
78     ALA-HA H1
79     ALA-CB CT
80     ALA-HB HC
81     VAL-N N
82     VAL-CA CT
83     VAL-C C
84     VAL-HN H
85     VAL-O O
86     VAL-HA H1
87     VAL-CB CT
88     VAL-HB HC
89 cli2 1289 VAL-CG CT
90     VAL-HG HC
91 gezelter 1270 LEU-N N
92     LEU-CA CT
93     LEU-C C
94     LEU-HN H
95     LEU-O O
96     LEU-HA H1
97     LEU-CB CT
98     LEU-HB HC
99     LEU-CG CT
100     LEU-HG HC
101 cli2 1289 LEU-CD CT
102     LEU-HD HC
103 gezelter 1270 ILE-N N
104     ILE-CA CT
105     ILE-C C
106     ILE-HN H
107     ILE-O O
108     ILE-HA H1
109     ILE-CB CT
110     ILE-HB HC
111     ILE-CG1 CT
112     ILE-HG1 HC
113     ILE-CG2 CT
114     ILE-HG2 HC
115     ILE-CD CT
116     ILE-HD HC
117     SER-N N
118     SER-CA CT
119     SER-C C
120     SER-HN H
121     SER-O O
122     SER-HA H1
123     SER-CB CT
124     SER-HB H1
125     SER-OG OH
126     SER-HG HO
127     THR-N N
128     THR-CA CT
129     THR-C C
130     THR-HN H
131     THR-O O
132     THR-HA H1
133     THR-CB CT
134     THR-HB H1
135     THR-OG1 OH
136     THR-HG1 HO
137     THR-CG2 CT
138     THR-HG2 HC
139     CYS-N N
140     CYS-CA CT
141     CYS-C C
142     CYS-HN H
143     CYS-O O
144     CYS-HA H1
145     CYS-CB CT
146     CYS-HB H1
147     CYS-SG SH
148     CYS-HG HS
149     CYX-N N
150     CYX-CA CT
151     CYX-C C
152     CYX-HN H
153     CYX-O O
154     CYX-HA H1
155     CYX-CB CT
156     CYX-HB H1
157     CYX-SG S
158     PRO-N N
159     PRO-CA CT
160     PRO-C C
161     PRO-O O
162     PRO-HA H1
163     PRO-CB CT
164     PRO-HB HC
165     PRO-CG CT
166     PRO-HG HC
167     PRO-CD CT
168     PRO-HD H1
169     PHE-N N
170     PHE-CA CT
171     PHE-C C
172     PHE-HN H
173     PHE-O O
174     PHE-HA H1
175     PHE-CB CT
176     PHE-HB HC
177     PHE-CG CA
178     PHE-CD CA
179     PHE-HD HA
180     PHE-CE CA
181     PHE-HE HA
182     PHE-CZ CA
183     PHE-HZ HA
184     TYR-N N
185     TYR-CA CT
186     TYR-C C
187     TYR-HN H
188     TYR-O O
189     TYR-HA H1
190     TYR-CB CT
191     TYR-HB HC
192     TYR-CG CA
193     TYR-CD CA
194     TYR-HD HA
195     TYR-CE CA
196     TYR-HE HA
197     TYR-CZ CA
198     TYR-OH OH
199 cli2 1289 TYR-HO HO
200 gezelter 1270 TRP-N N
201     TRP-CA CT
202     TRP-C C
203     TRP-HN H
204     TRP-O O
205     TRP-HA H1
206     TRP-CB CT
207     TRP-HB HC
208     TRP-CG C*
209     TRP-CD1 CW
210     TRP-HD1 H4
211     TRP-CD2 CB
212     TRP-NE1 NA
213     TRP-HE1 H
214     TRP-CE2 CN
215     TRP-CE3 CA
216     TRP-HE3 HA
217     TRP-CZ2 CA
218     TRP-HZ2 HA
219     TRP-CZ3 CA
220     TRP-HZ3 HA
221     TRP-CH2 CA
222     TRP-HH2 HA
223     HIS-N N
224     HIS-CA CT
225     HIS-C C
226     HIS-HN H
227     HIS-O O
228     HIS-HA H1
229     HIS-CB CT
230     HIS-HB HC
231     HIS-CG CC
232     HIS-ND1 NA
233     HIS-HD1 H
234     HIS-CD2 CW
235     HIS-HD2 H4
236     HIS-CE1 CR
237     HIS-HE1 H5
238     HIS-NE2 NA
239     HIS-HE2 H
240     HID-N N
241     HID-CA CT
242     HID-C C
243     HID-HN H
244     HID-O O
245     HID-HA H1
246     HID-CB CT
247     HID-HB HC
248     HID-CG CC
249     HID-ND1 NA
250     HID-HD1 H
251     HID-CD2 CV
252     HID-HD2 H4
253     HID-CE1 CR
254     HID-HE1 H5
255     HID-NE2 NB
256     HIE-N N
257     HIE-CA CT
258     HIE-C C
259     HIE-HN H
260     HIE-O O
261     HIE-HA H1
262     HIE-CB CT
263     HIE-HB HC
264     HIE-CG CC
265     HIE-ND1 NB
266     HIE-CD2 CW
267     HIE-HD2 H4
268     HIE-CE1 CR
269     HIE-HE1 H5
270     HIE-NE2 NA
271     HIE-HE2 H
272     ASP-N N
273     ASP-CA CT
274     ASP-C C
275     ASP-HN H
276     ASP-O O
277     ASP-HA H1
278     ASP-CB CT
279     ASP-HB HC
280     ASP-CG C
281     ASP-OD O2
282     ASN-N N
283     ASN-CA CT
284     ASN-C C
285     ASN-HN H
286     ASN-O O
287     ASN-HA H1
288     ASN-CB CT
289     ASN-HB HC
290     ASN-CG C
291     ASN-OD1 O
292     ASN-ND2 N
293     ASN-HD2 H
294     GLU-N N
295     GLU-CA CT
296     GLU-C C
297     GLU-HN H
298     GLU-O O
299     GLU-HA H1
300     GLU-CB CT
301     GLU-HB HC
302     GLU-CG CT
303     GLU-HG HC
304     GLU-CD C
305     GLU-OE O2
306     GLN-N N
307     GLN-CA CT
308     GLN-C C
309     GLN-HN H
310     GLN-O O
311     GLN-HA H1
312     GLN-CB CT
313     GLN-HB HC
314     GLN-CG CT
315     GLN-HG HC
316     GLN-CD C
317     GLN-OE1 O
318     GLN-NE2 N
319     GLN-HE2 H
320     MET-N N
321     MET-CA CT
322     MET-C C
323     MET-HN H
324     MET-O O
325     MET-HA H1
326     MET-CB CT
327     MET-HB HC
328     MET-CG CT
329     MET-HG H1
330     MET-SD S
331     MET-CE CT
332     MET-HE H1
333     LYS-N N
334     LYS-CA CT
335     LYS-C C
336     LYS-HN H
337     LYS-O O
338     LYS-HA H1
339     LYS-CB CT
340     LYS-HB HC
341     LYS-CG CT
342     LYS-HG HC
343     LYS-CD CT
344     LYS-HD HC
345     LYS-CE CT
346     LYS-HE HP
347     LYS-NZ N3
348     LYS-HZ H
349     ARG-N N
350     ARG-CA CT
351     ARG-C C
352     ARG-HN H
353     ARG-O O
354     ARG-HA H1
355     ARG-CB CT
356     ARG-HB HC
357     ARG-CG CT
358     ARG-HG HC
359     ARG-CD CT
360     ARG-HD H1
361     ARG-NE N2
362     ARG-HE H
363     ARG-CZ CA
364     ARG-NH N2
365     ARG-HH H
366     ORN-N N
367     ORN-CA CT
368     ORN-C C
369     ORN-HN H
370     ORN-O O
371     ORN-HA H1
372     ORN-CB CT
373     ORN-HB HC
374     ORN-CG CT
375     ORN-HG HC
376     ORN-CD CT
377     ORN-HD HP
378     ORN-NE N3
379     ORN-HE H
380     MAA-N N
381     MAA-CA CT
382     MAA-C C
383     MAA-HN H
384     MAA-O O
385     MAA-CB CT
386     MAA-HB HC
387     PCA-N N
388     PCA-CA CT
389     PCA-C C
390     PCA-HN H
391     PCA-O O
392     PCA-HA H1
393     PCA-CB CT
394     PCA-HB HC
395     PCA-CG CT
396     PCA-HG HC
397     PCA-CD C
398     PCA-OE O
399     FOR-C C
400     FOR-H H
401     FOR-O O
402     ACE-CA CT
403     ACE-HA HC
404     ACE-C C
405     ACE-O O
406 gezelter 1278 C-Term-N N
407     C-Term-H H
408     N-MeAmide-N N
409     N-MeAmide-H H
410     N-MeAmide-C CT
411     N-MeAmide-H1 H1
412 gezelter 1270 NGLY-N N3
413     NGLY-CA CT
414     NGLY-C C
415     NGLY-HN H
416     NGLY-O O
417     NGLY-HA H1
418     NALA-N N3
419     NALA-CA CT
420     NALA-C C
421     NALA-HN H
422     NALA-O O
423     NALA-HA H1
424     NVAL-N N3
425     NVAL-CA CT
426     NVAL-C C
427     NVAL-HN H
428     NVAL-O O
429     NVAL-HA H1
430     NLEU-N N3
431     NLEU-CA CT
432     NLEU-C C
433     NLEU-HN H
434     NLEU-O O
435     NLEU-HA H1
436     NILE-N N3
437     NILE-CA CT
438     NILE-C C
439     NILE-HN H
440     NILE-O O
441     NILE-HA H1
442     NSER-N N3
443     NSER-CA CT
444     NSER-C C
445     NSER-HN H
446     NSER-O O
447     NSER-HA H1
448     NTHR-N N3
449     NTHR-CA CT
450     NTHR-C C
451     NTHR-HN H
452     NTHR-O O
453     NTHR-HA H1
454     NCYS-N N3
455     NCYS-CA CT
456     NCYS-C C
457     NCYS-HN H
458     NCYS-O O
459     NCYS-HA H1
460     NCYX-N N3
461     NCYX-CA CT
462     NCYX-C C
463     NCYX-HN H
464     NCYX-O O
465     NCYX-HA H1
466     NPRO-N N3
467     NPRO-CA CT
468     NPRO-C C
469     NPRO-HN H
470     NPRO-O O
471     NPRO-HA H1
472     NPRO-CD CT
473     NPRO-HD HP
474     NPHE-N N3
475     NPHE-CA CT
476     NPHE-C C
477     NPHE-HN H
478     NPHE-O O
479     NPHE-HA H1
480     NTYR-N N3
481     NTYR-CA CT
482     NTYR-C C
483     NTYR-HN H
484     NTYR-O O
485     NTYR-HA H1
486     NTRP-N N3
487     NTRP-CA CT
488     NTRP-C C
489     NTRP-HN H
490     NTRP-O O
491     NTRP-HA H1
492     NHIS-N N3
493     NHIS-CA CT
494     NHIS-C C
495     NHIS-HN H
496     NHIS-O O
497     NHIS-HA H1
498     NHID-N N3
499     NHID-CA CT
500     NHID-C C
501     NHID-HN H
502     NHID-O O
503     NHID-HA H1
504     NHIE-N N3
505     NHIE-CA CT
506     NHIE-C C
507     NHIE-HN H
508     NHIE-O O
509     NHIE-HA H1
510     NASP-N N3
511     NASP-CA CT
512     NASP-C C
513     NASP-HN H
514     NASP-O O
515     NASP-HA H1
516     NASN-N N3
517     NASN-CA CT
518     NASN-C C
519     NASN-HN H
520     NASN-O O
521     NASN-HA H1
522     NGLU-N N3
523     NGLU-CA CT
524     NGLU-C C
525     NGLU-HN H
526     NGLU-O O
527     NGLU-HA H1
528 cli2 1289 NGLN-N N3
529     NGLN-CA CT
530     NGLN-C C
531     NGLN-HN H
532     NGLN-O O
533     NGLN-HA H1
534     NGLN-CB CT
535     NGLN-HB HC
536     NGLN-CG CT
537     NGLN-HG HC
538     NGLN-CD C
539     NGLN-OE1 O
540     NGLN-NE2 N
541     NGLN-HE2 H
542 gezelter 1270 NMET-N N3
543     NMET-CA CT
544     NMET-C C
545     NMET-HN H
546     NMET-O O
547     NMET-HA H1
548     NLYS-N N3
549     NLYS-CA CT
550     NLYS-C C
551     NLYS-HN H
552     NLYS-O O
553     NLYS-HA H1
554     NARG-N N3
555     NARG-CA CT
556     NARG-C C
557     NARG-HN H
558     NARG-O O
559     NARG-HA H1
560     NORN-N N3
561     NORN-CA CT
562     NORN-C C
563     NORN-HN H
564     NORN-O O
565     NORN-HA H1
566     NAIB-N N3
567     NAIB-CA CT
568     NAIB-C C
569     NAIB-HN H
570     NAIB-O O
571     CGLY-N N
572     CGLY-CA CT
573     CGLY-C C
574     CGLY-HN H
575     CGLY-OXT O2
576     CGLY-HA H1
577     CALA-N N
578     CALA-CA CT
579     CALA-C C
580     CALA-HN H
581     CALA-OXT O2
582     CALA-HA H1
583     CVAL-N N
584     CVAL-CA CT
585     CVAL-C C
586     CVAL-HN H
587     CVAL-OXT O2
588     CVAL-HA H1
589     CLEU-N N
590     CLEU-CA CT
591     CLEU-C C
592     CLEU-HN H
593     CLEU-OXT O2
594     CLEU-HA H1
595     CILE-N N
596     CILE-CA CT
597     CILE-C C
598     CILE-HN H
599     CILE-OXT O2
600     CILE-HA H1
601     CSER-N N
602     CSER-CA CT
603     CSER-C C
604     CSER-HN H
605     CSER-OXT O2
606     CSER-HA H1
607     CTHR-N N
608     CTHR-CA CT
609     CTHR-C C
610     CTHR-HN H
611     CTHR-OXT O2
612     CTHR-HA H1
613     CCYS-N N
614     CCYS-CA CT
615     CCYS-C C
616     CCYS-HN H
617     CCYS-OXT O2
618     CCYS-HA H1
619     CCYX-N N
620     CCYX-CA CT
621     CCYX-C C
622     CCYX-HN H
623     CCYX-OXT O2
624     CCYX-HA H1
625     CPRO-N N
626     CPRO-CA CT
627     CPRO-C C
628     CPRO-OXT O2
629 cli2 1289 CPRO-O O
630 gezelter 1270 CPRO-HA H1
631 cli2 1289 CPRO-CB CT
632     CPRO-HB HC
633     CPRO-CG CT
634     CPRO-HG HC
635     CPRO-CD CT
636     CPRO-HD H1
637 gezelter 1270 CPHE-N N
638     CPHE-CA CT
639     CPHE-C C
640     CPHE-HN H
641     CPHE-OXT O2
642     CPHE-HA H1
643     CTYR-N N
644     CTYR-CA CT
645     CTYR-C C
646     CTYR-HN H
647     CTYR-OXT O2
648     CTYR-HA H1
649     CTRP-N N
650     CTRP-CA CT
651     CTRP-C C
652     CTRP-HN H
653     CTRP-OXT O2
654     CTRP-HA H1
655     CHIS-N N
656     CHIS-CA CT
657     CHIS-C C
658     CHIS-HN H
659     CHIS-OXT O2
660     CHIS-HA H1
661     CHID-N N
662     CHID-CA CT
663     CHID-C C
664     CHID-HN H
665     CHID-OXT O2
666     CHID-HA H1
667     CHIE-N N
668     CHIE-CA CT
669     CHIE-C C
670     CHIE-HN H
671     CHIE-OXT O2
672     CHIE-HA H1
673     CASP-N N
674     CASP-CA CT
675     CASP-C C
676     CASP-HN H
677     CASP-OXT O2
678     CASP-HA H1
679     CASN-N N
680     CASN-CA CT
681     CASN-C C
682     CASN-HN H
683     CASN-OXT O2
684     CASN-HA H1
685     CGLU-N N
686     CGLU-CA CT
687     CGLU-C C
688     CGLU-HN H
689     CGLU-OXT O2
690     CGLU-HA H1
691     CGLN-N N
692     CGLN-CA CT
693     CGLN-C C
694     CGLN-HN H
695     CGLN-OXT O2
696     CGLN-HA H1
697     CMET-N N
698     CMET-CA CT
699     CMET-C C
700     CMET-HN H
701     CMET-OXT O2
702     CMET-HA H1
703     CLYS-N N
704     CLYS-CA CT
705     CLYS-C C
706     CLYS-HN H
707     CLYS-OXT O2
708     CLYS-HA H1
709     CARG-N N
710     CARG-CA CT
711     CARG-C C
712     CARG-HN H
713     CARG-OXT O2
714     CARG-HA H1
715     CORN-N N
716     CORN-CA CT
717     CORN-C C
718     CORN-HN H
719     CORN-OXT O2
720     CORN-HA H1
721     CAIB-N N
722     CAIB-CA CT
723     CAIB-C C
724     CAIB-HN H
725     CAIB-OXT O2
726     RA-O5' OS
727     RA-C5' CT
728     RA-H5'1 H1
729     RA-H5'2 H1
730     RA-C4' CT
731     RA-H4' H1
732     RA-O4' OS
733     RA-C1' CT
734     RA-H1' H2
735     RA-C3' CT
736     RA-H3' H1
737     RA-C2' CT
738     RA-H2'1 H1
739     RA-O2' OH
740     RA-HO'2 HO
741     RA-O3' OS
742     RA-N9 N*
743     RA-C4 CB
744     RA-C5 CB
745     RA-N7 NB
746     RA-C8 CK
747     RA-N3 NC
748     RA-C2 CQ
749     RA-N1 NC
750     RA-C6 CA
751     RA-H2 H5
752     RA-N6 N2
753     RA-H61 H
754     RA-H62 H
755     RA-H8 H5
756     RG-O5' OS
757     RG-C5' CT
758     RG-H5'1 H1
759     RG-H5'2 H1
760     RG-C4' CT
761     RG-H4' H1
762     RG-O4' OS
763     RG-C1' CT
764     RG-H1' H2
765     RG-C3' CT
766     RG-H3' H1
767     RG-C2' CT
768     RG-H2'1 H1
769     RG-O2' OH
770     RG-HO'2 HO
771     RG-O3' OS
772     RG-N9 N*
773     RG-C4 CB
774     RG-C5 CB
775     RG-N7 NB
776     RG-C8 CK
777     RG-N3 NC
778     RG-C2 CA
779     RG-N1 NA
780     RG-C6 C
781     RG-H1 H
782     RG-N2 N2
783     RG-H21 H
784     RG-H22 H
785     RG-O6 O
786     RG-H8 H5
787     RC-O5' OS
788     RC-C5' CT
789     RC-H5'1 H1
790     RC-H5'2 H1
791     RC-C4' CT
792     RC-H4' H1
793     RC-O4' OS
794     RC-C1' CT
795     RC-H1' H2
796     RC-C3' CT
797     RC-H3' H1
798     RC-C2' CT
799     RC-H2'1 H1
800     RC-O2' OH
801     RC-HO'2 HO
802     RC-O3' OS
803     RC-N1 N*
804     RC-C2 C
805     RC-N3 NC
806     RC-C4 CA
807     RC-C5 CM
808     RC-C6 CM
809     RC-O2 O
810     RC-N4 N2
811     RC-H41 H
812     RC-H42 H
813     RC-H5 HA
814     RC-H6 H4
815     RU-O5' OS
816     RU-C5' CT
817     RU-H5'1 H1
818     RU-H5'2 H1
819     RU-C4' CT
820     RU-H4' H1
821     RU-O4' OS
822     RU-C1' CT
823     RU-H1' H2
824     RU-C3' CT
825     RU-H3' H1
826     RU-C2' CT
827     RU-H2'1 H1
828     RU-O2' OH
829     RU-HO'2 HO
830     RU-O3' OS
831     RU-N1 N*
832     RU-C2 C
833     RU-N3 NA
834     RU-C4 C
835     RU-C5 CM
836     RU-C6 CM
837     RU-O2 O
838     RU-H3 H
839     RU-O4 O
840     RU-H5 HA
841     RU-H6 H4
842     DA-O5' OS
843     DA-C5' CT
844     DA-H5'1 H1
845     DA-H5'2 H1
846     DA-C4' CT
847     DA-H4' H1
848     DA-O4' OS
849     DA-C1' CT
850     DA-H1' H2
851     DA-C3' CT
852     DA-H3' H1
853     DA-C2' CT
854     DA-H2'1 HC
855     DA-H2'2 HC
856     DA-O3' OS
857     DA-N9 N*
858     DA-C4 CB
859     DA-C5 CB
860     DA-N7 NB
861     DA-C8 CK
862     DA-N3 NC
863     DA-C2 CQ
864     DA-N1 NC
865     DA-C6 CA
866     DA-H2 H5
867     DA-N6 N2
868     DA-H61 H
869     DA-H62 H
870     DA-H8 H5
871     DG-O5' OS
872     DG-C5' CT
873     DG-H5'1 H1
874     DG-H5'2 H1
875     DG-C4' CT
876     DG-H4' H1
877     DG-O4' OS
878     DG-C1' CT
879     DG-H1' H2
880     DG-C3' CT
881     DG-H3' H1
882     DG-C2' CT
883     DG-H2'1 HC
884     DG-H2'2 HC
885     DG-O3' OS
886     DG-N9 N*
887     DG-C4 CB
888     DG-C5 CB
889     DG-N7 NB
890     DG-C8 CK
891     DG-N3 NC
892     DG-C2 CA
893     DG-N1 NA
894     DG-C6 C
895     DG-H1 H
896     DG-N2 N2
897     DG-H21 H
898     DG-H22 H
899     DG-O6 O
900     DG-H8 H5
901     DC-O5' OS
902     DC-C5' CT
903     DC-H5'1 H1
904     DC-H5'2 H1
905     DC-C4' CT
906     DC-H4' H1
907     DC-O4' OS
908     DC-C1' CT
909     DC-H1' H2
910     DC-C3' CT
911     DC-H3' H1
912     DC-C2' CT
913     DC-H2'1 HC
914     DC-H2'2 HC
915     DC-O3' OS
916     DC-N1 N*
917     DC-C2 C
918     DC-N3 NC
919     DC-C4 CA
920     DC-C5 CM
921     DC-C6 CM
922     DC-O2 O
923     DC-N4 N2
924     DC-H41 H
925     DC-H42 H
926     DC-H5 HA
927     DC-H6 H4
928     DT-O5' OS
929     DT-C5' CT
930     DT-H5'1 H1
931     DT-H5'2 H1
932     DT-C4' CT
933     DT-H4' H1
934     DT-O4' OS
935     DT-C1' CT
936     DT-H1' H2
937     DT-C3' CT
938     DT-H3' H1
939     DT-C2' CT
940     DT-H2'1 HC
941     DT-H2'2 HC
942     DT-O3' OS
943     DT-N1 N*
944     DT-C2 C
945     DT-N3 NA
946     DT-C4 C
947     DT-C5 CM
948     DT-C6 CM
949     DT-O2 O
950     DT-H3 H
951     DT-O4 O
952     DT-C7 CT
953     DT-H7 HC
954     DT-H6 H4
955 gezelter 1278 R-Phosphodiester-P P
956     R-Phosphodiester-O O2
957 gezelter 1270 R5H-O5' OH
958     R5H-H5T HO
959     R5P-O5' OS
960     R5P-P P
961     R5P-OP O2
962     R3H-O3' OH
963     R3H-H3T HO
964     R3P-O3' OS
965     R3P-P P
966     R3P-OP O2
967 gezelter 1278 D-Phosphodiester-P P
968     D-Phosphodiester-O O2
969 gezelter 1270 D5H-O5' OH
970     D5H-H5T HO
971     D5P-O5' OS
972     D5P-P P
973     D5P-OP O2
974     D3H-O3' OH
975     D3H-H3T HO
976     D3P-O3' OS
977     D3P-P P
978     D3P-OP O2
979 gezelter 1278 TIP3P-O OW
980     TIP3P-H HW
981 gezelter 1363 O_TIP3P OW
982     O_TIP4P OW
983     O_TIP4P-Ew OW
984     O_TIP5P OW
985     O_TIP5P-E OW
986     O_SPCE OW
987 gezelter 1782 O_SPC OW
988     O_POL3 OW
989 gezelter 1363 H_TIP3P HW
990     H_TIP4P HW
991     H_TIP4P-Ew HW
992     H_TIP5P HW
993     H_SPCE HW
994     H_SPC HW
995 gezelter 1782 H_POL3 HW
996 gezelter 1363 EP_TIP4P EP
997     EP_TIP4P-Ew EP
998     EP_TIP5P EP
999 gezelter 1270 end AtomTypes
1000    
1001    
1002     begin ChargeAtomTypes
1003     //name charge
1004 gezelter 1563 HO 0.435
1005     OH -0.7
1006 gezelter 1418 O2 -0.5
1007     C 0.55
1008 gezelter 1270 GLY-N -0.4157
1009     GLY-CA -0.0252
1010     GLY-C 0.5973
1011     GLY-HN 0.2719
1012     GLY-O -0.5679
1013     GLY-HA 0.0698
1014     ALA-N -0.4157
1015     ALA-CA 0.0337
1016     ALA-C 0.5973
1017     ALA-HN 0.2719
1018     ALA-O -0.5679
1019     ALA-HA 0.0823
1020     ALA-CB -0.1825
1021     ALA-HB 0.0603
1022     VAL-N -0.4157
1023     VAL-CA -0.0875
1024     VAL-C 0.5973
1025     VAL-HN 0.2719
1026     VAL-O -0.5679
1027     VAL-HA 0.0969
1028     VAL-CB 0.2985
1029     VAL-HB -0.0297
1030 cli2 1289 VAL-CG -0.3192
1031     VAL-HG 0.0791
1032 gezelter 1270 LEU-N -0.4157
1033     LEU-CA -0.0518
1034     LEU-C 0.5973
1035     LEU-HN 0.2719
1036     LEU-O -0.5679
1037     LEU-HA 0.0922
1038     LEU-CB -0.1102
1039     LEU-HB 0.0457
1040     LEU-CG 0.3531
1041     LEU-HG -0.0361
1042 cli2 1289 LEU-CD -0.4121
1043     LEU-HD 0.1000
1044 gezelter 1270 ILE-N -0.4157
1045     ILE-CA -0.0597
1046     ILE-C 0.5973
1047     ILE-HN 0.2719
1048     ILE-O -0.5679
1049     ILE-HA 0.0869
1050     ILE-CB 0.1303
1051     ILE-HB 0.0187
1052     ILE-CG1 -0.0430
1053     ILE-HG1 0.0236
1054     ILE-CG2 -0.3204
1055     ILE-HG2 0.0882
1056     ILE-CD -0.0660
1057     ILE-HD 0.0186
1058     SER-N -0.4157
1059     SER-CA -0.0249
1060     SER-C 0.5973
1061     SER-HN 0.2719
1062     SER-O -0.5679
1063     SER-HA 0.0843
1064     SER-CB 0.2117
1065     SER-HB 0.0352
1066     SER-OG -0.6546
1067     SER-HG 0.4275
1068     THR-N -0.4157
1069     THR-CA -0.0389
1070     THR-C 0.5973
1071     THR-HN 0.2719
1072     THR-O -0.5679
1073     THR-HA 0.1007
1074     THR-CB 0.3654
1075     THR-HB 0.0043
1076     THR-OG1 -0.6761
1077     THR-HG1 0.4102
1078     THR-CG2 -0.2438
1079     THR-HG2 0.0642
1080     CYS-N -0.4157
1081     CYS-CA 0.0213
1082     CYS-C 0.5973
1083     CYS-HN 0.2719
1084     CYS-O -0.5679
1085     CYS-HA 0.1124
1086     CYS-CB -0.1231
1087     CYS-HB 0.1112
1088     CYS-SG -0.3119
1089     CYS-HG 0.1933
1090     CYX-N -0.4157
1091     CYX-CA 0.0429
1092     CYX-C 0.5973
1093     CYX-HN 0.2719
1094     CYX-O -0.5679
1095     CYX-HA 0.0766
1096     CYX-CB -0.0790
1097     CYX-HB 0.0910
1098     CYX-SG -0.1081
1099     PRO-N -0.2548
1100     PRO-CA -0.0266
1101     PRO-C 0.5896
1102     PRO-O -0.5748
1103     PRO-HA 0.0641
1104     PRO-CB -0.0070
1105     PRO-HB 0.0253
1106     PRO-CG 0.0189
1107     PRO-HG 0.0213
1108     PRO-CD 0.0192
1109     PRO-HD 0.0391
1110     PHE-N -0.4157
1111     PHE-CA -0.0024
1112     PHE-C 0.5973
1113     PHE-HN 0.2719
1114     PHE-O -0.5679
1115     PHE-HA 0.0978
1116     PHE-CB -0.0343
1117     PHE-HB 0.0295
1118     PHE-CG 0.0118
1119     PHE-CD -0.1256
1120     PHE-HD 0.1330
1121     PHE-CE -0.1704
1122     PHE-HE 0.1430
1123     PHE-CZ -0.1072
1124     PHE-HZ 0.1297
1125     TYR-N -0.4157
1126     TYR-CA -0.0014
1127     TYR-C 0.5973
1128     TYR-HN 0.2719
1129     TYR-O -0.5679
1130     TYR-HA 0.0876
1131     TYR-CB -0.0152
1132     TYR-HB 0.0295
1133     TYR-CG -0.0011
1134     TYR-CD -0.1906
1135     TYR-HD 0.1699
1136     TYR-CE -0.2341
1137     TYR-HE 0.1656
1138     TYR-CZ 0.3226
1139     TYR-OH -0.5579
1140 cli2 1289 TYR-HO 0.3992
1141 gezelter 1270 TRP-N -0.4157
1142     TRP-CA -0.0275
1143     TRP-C 0.5973
1144     TRP-HN 0.2719
1145     TRP-O -0.5679
1146     TRP-HA 0.1123
1147     TRP-CB -0.0050
1148     TRP-HB 0.0339
1149     TRP-CG -0.1415
1150     TRP-CD1 -0.1638
1151     TRP-HD1 0.2062
1152     TRP-CD2 0.1243
1153     TRP-NE1 -0.3418
1154     TRP-HE1 0.3412
1155     TRP-CE2 0.1380
1156     TRP-CE3 -0.2387
1157     TRP-HE3 0.1700
1158     TRP-CZ2 -0.2601
1159     TRP-HZ2 0.1572
1160     TRP-CZ3 -0.1972
1161     TRP-HZ3 0.1447
1162     TRP-CH2 -0.1134
1163     TRP-HH2 0.1417
1164     HIS-N -0.3479
1165     HIS-CA -0.1354
1166     HIS-C 0.7341
1167     HIS-HN 0.2747
1168     HIS-O -0.5894
1169     HIS-HA 0.1212
1170     HIS-CB -0.0414
1171     HIS-HB 0.0810
1172     HIS-CG -0.0012
1173     HIS-ND1 -0.1513
1174     HIS-HD1 0.3866
1175     HIS-CD2 -0.1141
1176     HIS-HD2 0.2317
1177     HIS-CE1 -0.0170
1178     HIS-HE1 0.2681
1179     HIS-NE2 -0.1718
1180     HIS-HE2 0.3911
1181     HID-N -0.4157
1182     HID-CA 0.0188
1183     HID-C 0.5973
1184     HID-HN 0.2719
1185     HID-O -0.5679
1186     HID-HA 0.0881
1187     HID-CB -0.0462
1188     HID-HB 0.0402
1189     HID-CG -0.0266
1190     HID-ND1 -0.3811
1191     HID-HD1 0.3649
1192     HID-CD2 0.1292
1193     HID-HD2 0.1147
1194     HID-CE1 0.2057
1195     HID-HE1 0.1392
1196     HID-NE2 -0.5727
1197     HIE-N -0.4157
1198     HIE-CA -0.0581
1199     HIE-C 0.5973
1200     HIE-HN 0.2719
1201     HIE-O -0.5679
1202     HIE-HA 0.1360
1203     HIE-CB -0.0074
1204     HIE-HB 0.0367
1205     HIE-CG 0.1868
1206     HIE-ND1 -0.5432
1207     HIE-CD2 -0.2207
1208     HIE-HD2 0.1862
1209     HIE-CE1 0.1635
1210     HIE-HE1 0.1435
1211     HIE-NE2 -0.2795
1212     HIE-HE2 0.3339
1213     ASP-N -0.5163
1214     ASP-CA 0.0381
1215     ASP-C 0.5366
1216     ASP-HN 0.2936
1217     ASP-O -0.5819
1218     ASP-HA 0.0880
1219     ASP-CB -0.0303
1220     ASP-HB -0.0122
1221     ASP-CG 0.7994
1222     ASP-OD -0.8014
1223     ASN-N -0.4157
1224     ASN-CA 0.0143
1225     ASN-C 0.5973
1226     ASN-HN 0.2719
1227     ASN-O -0.5679
1228     ASN-HA 0.1048
1229     ASN-CB -0.2041
1230     ASN-HB 0.0797
1231     ASN-CG 0.7130
1232     ASN-OD1 -0.5931
1233     ASN-ND2 -0.9191
1234     ASN-HD2 0.4196
1235     GLU-N -0.5163
1236     GLU-CA 0.0397
1237     GLU-C 0.5366
1238     GLU-HN 0.2936
1239     GLU-O -0.5819
1240     GLU-HA 0.1105
1241     GLU-CB 0.0560
1242     GLU-HB -0.0173
1243     GLU-CG 0.0136
1244     GLU-HG -0.0425
1245     GLU-CD 0.8054
1246     GLU-OE -0.8188
1247 gezelter 2063 #GLU-OE2 -0.8188
1248     #GLU-HE2 0.4641
1249 gezelter 1270 GLN-N -0.4157
1250     GLN-CA -0.0031
1251     GLN-C 0.5973
1252     GLN-HN 0.2719
1253     GLN-O -0.5679
1254     GLN-HA 0.0850
1255     GLN-CB -0.0036
1256     GLN-HB 0.0171
1257     GLN-CG -0.0645
1258     GLN-HG 0.0352
1259     GLN-CD 0.6951
1260     GLN-OE1 -0.6086
1261     GLN-NE2 -0.9407
1262     GLN-HE2 0.4251
1263     MET-N -0.4157
1264     MET-CA -0.0237
1265     MET-C 0.5973
1266     MET-HN 0.2719
1267     MET-O -0.5679
1268     MET-HA 0.0880
1269     MET-CB 0.0342
1270     MET-HB 0.0241
1271     MET-CG 0.0018
1272     MET-HG 0.0440
1273     MET-SD -0.2737
1274     MET-CE -0.0536
1275     MET-HE 0.0684
1276     LYS-N -0.3479
1277     LYS-CA -0.2400
1278     LYS-C 0.7341
1279     LYS-HN 0.2747
1280     LYS-O -0.5894
1281     LYS-HA 0.1426
1282     LYS-CB -0.0094
1283     LYS-HB 0.0362
1284     LYS-CG 0.0187
1285     LYS-HG 0.0103
1286     LYS-CD -0.0479
1287     LYS-HD 0.0621
1288     LYS-CE -0.0143
1289     LYS-HE 0.1135
1290     LYS-NZ -0.3854
1291     LYS-HZ 0.3400
1292     ARG-N -0.3479
1293     ARG-CA -0.2637
1294     ARG-C 0.7341
1295     ARG-HN 0.2747
1296     ARG-O -0.5894
1297     ARG-HA 0.1560
1298     ARG-CB -0.0007
1299     ARG-HB 0.0327
1300     ARG-CG 0.0390
1301     ARG-HG 0.0285
1302     ARG-CD 0.0486
1303     ARG-HD 0.0687
1304     ARG-NE -0.5295
1305     ARG-HE 0.3456
1306     ARG-CZ 0.8076
1307     ARG-NH -0.8627
1308     ARG-HH 0.4478
1309     ORN-N -0.3479
1310     ORN-CA -0.2400
1311     ORN-C 0.7341
1312     ORN-HN 0.2747
1313     ORN-O -0.5894
1314     ORN-HA 0.1426
1315     ORN-CB 0.0099
1316     ORN-HB 0.0362
1317     ORN-CG -0.0279
1318     ORN-HG 0.0621
1319     ORN-CD -0.0143
1320     ORN-HD 0.1135
1321     ORN-NE -0.3854
1322     ORN-HE 0.3400
1323     MAA-N -0.4157
1324     MAA-CA 0.1032
1325     MAA-C 0.5973
1326     MAA-HN 0.2719
1327     MAA-O -0.5679
1328     MAA-CB -0.2503
1329     MAA-HB 0.0853
1330     PCA-N -0.4157
1331     PCA-CA -0.0371
1332     PCA-C 0.5973
1333     PCA-HN 0.2719
1334     PCA-O -0.5679
1335     PCA-HA 0.0850
1336     PCA-CB -0.0036
1337     PCA-HB 0.0171
1338     PCA-CG -0.0645
1339     PCA-HG 0.0352
1340     PCA-CD 0.6000
1341     PCA-OE -0.5700
1342     FOR-C 0.5500
1343     FOR-H 0.0000
1344     FOR-O -0.5500
1345     ACE-CA -0.3662
1346     ACE-HA 0.1123
1347     ACE-C 0.5972
1348     ACE-O -0.5679
1349 gezelter 1278 C-Term-N -0.8400
1350     C-Term-H 0.4200
1351     N-MeAmide-N -0.4157
1352     N-MeAmide-H 0.2719
1353     N-MeAmide-C -0.1490
1354     N-MeAmide-H1 0.0976
1355 gezelter 1270 NGLY-N 0.2943
1356     NGLY-CA -0.0100
1357     NGLY-C 0.6163
1358     NGLY-HN 0.1642
1359     NGLY-O -0.5722
1360     NGLY-HA 0.0895
1361     NALA-N 0.1414
1362     NALA-CA 0.1281
1363     NALA-C 0.6163
1364     NALA-HN 0.1997
1365     NALA-O -0.5722
1366     NALA-HA 0.0889
1367     NVAL-N 0.0577
1368     NVAL-CA 0.0023
1369     NVAL-C 0.6163
1370     NVAL-HN 0.2272
1371     NVAL-O -0.5722
1372     NVAL-HA 0.1093
1373     NLEU-N 0.1010
1374     NLEU-CA 0.0343
1375     NLEU-C 0.6123
1376     NLEU-HN 0.2148
1377     NLEU-O -0.5713
1378     NLEU-HA 0.1053
1379     NILE-N 0.0311
1380     NILE-CA 0.0389
1381     NILE-C 0.6123
1382     NILE-HN 0.2329
1383     NILE-O -0.5713
1384     NILE-HA 0.1031
1385     NSER-N 0.1849
1386     NSER-CA 0.0684
1387     NSER-C 0.6163
1388     NSER-HN 0.1898
1389     NSER-O -0.5722
1390     NSER-HA 0.0782
1391     NTHR-N 0.1812
1392     NTHR-CA 0.0332
1393     NTHR-C 0.6163
1394     NTHR-HN 0.1934
1395     NTHR-O -0.5722
1396     NTHR-HA 0.1087
1397     NCYS-N 0.1325
1398     NCYS-CA 0.0978
1399     NCYS-C 0.6123
1400     NCYS-HN 0.2023
1401     NCYS-O -0.5713
1402     NCYS-HA 0.1411
1403     NCYX-N 0.2096
1404     NCYX-CA 0.1138
1405     NCYX-C 0.6163
1406     NCYX-HN 0.1815
1407     NCYX-O -0.5713
1408     NCYX-HA 0.0922
1409     NPRO-N -0.2020
1410     NPRO-CA 0.1589
1411     NPRO-C 0.5260
1412     NPRO-HN 0.3120
1413     NPRO-O -0.5000
1414     NPRO-HA 0.1000
1415     NPRO-CD -0.0120
1416     NPRO-HD 0.1000
1417     NPHE-N 0.1737
1418     NPHE-CA 0.0859
1419     NPHE-C 0.6123
1420     NPHE-HN 0.1921
1421     NPHE-O -0.5713
1422     NPHE-HA 0.1041
1423     NTYR-N 0.1940
1424     NTYR-CA 0.0766
1425     NTYR-C 0.6123
1426     NTYR-HN 0.1873
1427     NTYR-O -0.5713
1428     NTYR-HA 0.0983
1429     NTRP-N 0.1913
1430     NTRP-CA 0.0555
1431     NTRP-C 0.6123
1432     NTRP-HN 0.1888
1433     NTRP-O -0.5713
1434     NTRP-HA 0.1162
1435     NHIS-N 0.2560
1436     NHIS-CA 0.0653
1437     NHIS-C 0.7214
1438     NHIS-HN 0.1704
1439     NHIS-O -0.6013
1440     NHIS-HA 0.1047
1441     NHID-N 0.1542
1442     NHID-CA 0.1126
1443     NHID-C 0.6123
1444     NHID-HN 0.1963
1445     NHID-O -0.5713
1446     NHID-HA 0.0958
1447     NHIE-N 0.1472
1448     NHIE-CA 0.0325
1449     NHIE-C 0.6123
1450     NHIE-HN 0.2016
1451     NHIE-O -0.5713
1452     NHIE-HA 0.1380
1453     NASP-N 0.0782
1454     NASP-CA 0.0326
1455     NASP-C 0.5621
1456     NASP-HN 0.2200
1457     NASP-O -0.5889
1458     NASP-HA 0.1141
1459     NASN-N 0.1801
1460     NASN-CA 0.0811
1461     NASN-C 0.6163
1462     NASN-HN 0.1921
1463     NASN-O -0.5722
1464     NASN-HA 0.1231
1465     NGLU-N 0.0017
1466     NGLU-CA 0.0698
1467     NGLU-C 0.5621
1468     NGLU-HN 0.2391
1469     NGLU-O -0.5889
1470     NGLU-HA 0.1202
1471 cli2 1289 NGLN-N 0.1493
1472     NGLN-CA 0.0769
1473     NGLN-C 0.6123
1474     NGLN-HN 0.1996
1475     NGLN-O -0.5713
1476     NGLN-HA 0.1015
1477 gezelter 1270 NMET-N 0.1592
1478     NMET-CA 0.0429
1479     NMET-C 0.6123
1480     NMET-HN 0.1984
1481     NMET-O -0.5713
1482     NMET-HA 0.1116
1483     NLYS-N 0.0966
1484     NLYS-CA -0.0101
1485     NLYS-C 0.7214
1486     NLYS-HN 0.2165
1487     NLYS-O -0.6013
1488     NLYS-HA 0.1180
1489     NARG-N 0.1305
1490     NARG-CA -0.0359
1491     NARG-C 0.7214
1492     NARG-HN 0.2083
1493     NARG-O -0.6013
1494     NARG-HA 0.1242
1495     NORN-N 0.0966
1496     NORN-CA -0.0101
1497     NORN-C 0.7214
1498     NORN-HN 0.2165
1499     NORN-O -0.6013
1500     NORN-HA 0.1180
1501     NAIB-N 0.1000
1502     NAIB-CA 0.2447
1503     NAIB-C 0.6163
1504     NAIB-HN 0.2000
1505     NAIB-O -0.5722
1506     CGLY-N -0.3821
1507     CGLY-CA -0.2493
1508     CGLY-C 0.7231
1509     CGLY-HN 0.2681
1510     CGLY-OXT -0.7855
1511     CGLY-HA 0.1056
1512     CALA-N -0.3821
1513     CALA-CA -0.1532
1514     CALA-C 0.7731
1515     CALA-HN 0.2681
1516     CALA-OXT -0.8055
1517     CALA-HA 0.1067
1518     CVAL-N -0.3821
1519     CVAL-CA -0.3352
1520     CVAL-C 0.8350
1521     CVAL-HN 0.2681
1522     CVAL-OXT -0.8173
1523     CVAL-HA 0.1438
1524     CLEU-N -0.3821
1525     CLEU-CA -0.2874
1526     CLEU-C 0.8326
1527     CLEU-HN 0.2681
1528     CLEU-OXT -0.8199
1529     CLEU-HA 0.1346
1530     CILE-N -0.3821
1531     CILE-CA -0.3070
1532     CILE-C 0.8343
1533     CILE-HN 0.2681
1534     CILE-OXT -0.8190
1535     CILE-HA 0.1375
1536     CSER-N -0.3821
1537     CSER-CA -0.2563
1538     CSER-C 0.8113
1539     CSER-HN 0.2681
1540     CSER-OXT -0.8132
1541     CSER-HA 0.1304
1542     CTHR-N -0.3821
1543     CTHR-CA -0.2315
1544     CTHR-C 0.7810
1545     CTHR-HN 0.2681
1546     CTHR-OXT -0.8044
1547     CTHR-HA 0.1207
1548     CCYS-N -0.3821
1549     CCYS-CA -0.1598
1550     CCYS-C 0.7497
1551     CCYS-HN 0.2681
1552     CCYS-OXT -0.7981
1553     CCYS-HA 0.1396
1554     CCYX-N -0.3821
1555     CCYX-CA -0.1283
1556     CCYX-C 0.7618
1557     CCYX-HN 0.2681
1558     CCYX-OXT -0.8041
1559     CCYX-HA 0.0938
1560     CPRO-N -0.2802
1561     CPRO-CA -0.1236
1562     CPRO-C 0.6631
1563     CPRO-OXT -0.7697
1564     CPRO-HA 0.0776
1565     CPHE-N -0.3821
1566     CPHE-CA -0.1756
1567     CPHE-C 0.7660
1568     CPHE-HN 0.2681
1569     CPHE-OXT -0.8026
1570     CPHE-HA 0.1098
1571     CTYR-N -0.3821
1572     CTYR-CA -0.1911
1573     CTYR-C 0.7817
1574     CTYR-HN 0.2681
1575     CTYR-OXT -0.8070
1576     CTYR-HA 0.1092
1577     CTRP-N -0.3821
1578     CTRP-CA -0.2064
1579     CTRP-C 0.7658
1580     CTRP-HN 0.2681
1581     CTRP-OXT -0.8011
1582     CTRP-HA 0.1272
1583     CHIS-N -0.3481
1584     CHIS-CA -0.1503
1585     CHIS-C 0.8032
1586     CHIS-HN 0.2764
1587     CHIS-OXT -0.8177
1588     CHIS-HA 0.1115
1589     CHID-N -0.3821
1590     CHID-CA -0.1618
1591     CHID-C 0.7615
1592     CHID-HN 0.2681
1593     CHID-OXT -0.8016
1594     CHID-HA 0.1100
1595     CHIE-N -0.3821
1596     CHIE-CA -0.2661
1597     CHIE-C 0.7916
1598     CHIE-HN 0.2681
1599     CHIE-OXT -0.8065
1600     CHIE-HA 0.1650
1601     CASP-N -0.5192
1602     CASP-CA -0.1810
1603     CASP-C 0.7256
1604     CASP-HN 0.3055
1605     CASP-OXT -0.7887
1606     CASP-HA 0.1046
1607     CASN-N -0.3821
1608     CASN-CA -0.1927
1609     CASN-C 0.8050
1610     CASN-HN 0.2681
1611     CASN-OXT -0.8147
1612     CASN-HA 0.1358
1613     CGLU-N -0.5192
1614     CGLU-CA -0.2000
1615     CGLU-C 0.7420
1616     CGLU-HN 0.3055
1617     CGLU-OXT -0.7930
1618     CGLU-HA 0.1399
1619     CGLN-N -0.3821
1620     CGLN-CA -0.2108
1621     CGLN-C 0.7775
1622     CGLN-HN 0.2681
1623     CGLN-OXT -0.8042
1624     CGLN-HA 0.1232
1625     CMET-N -0.3821
1626     CMET-CA -0.2441
1627     CMET-C 0.8013
1628     CMET-HN 0.2681
1629     CMET-OXT -0.8105
1630     CMET-HA 0.1277
1631     CLYS-N -0.3481
1632     CLYS-CA -0.2964
1633     CLYS-C 0.8488
1634     CLYS-HN 0.2764
1635     CLYS-OXT -0.8252
1636     CLYS-HA 0.1438
1637     CARG-N -0.3481
1638     CARG-CA -0.3117
1639     CARG-C 0.8557
1640     CARG-HN 0.2764
1641     CARG-OXT -0.8266
1642     CARG-HA 0.1447
1643     CORN-N -0.3481
1644     CORN-CA -0.2964
1645     CORN-C 0.8488
1646     CORN-HN 0.2764
1647     CORN-OXT -0.8252
1648     CORN-HA 0.1438
1649     CAIB-N -0.3821
1650     CAIB-CA -0.0572
1651     CAIB-C 0.8000
1652     CAIB-HN 0.2681
1653     CAIB-OXT -0.8200
1654     RA-O5' -0.4989
1655     RA-C5' 0.0558
1656     RA-H5'1 0.0679
1657     RA-H5'2 0.0679
1658     RA-C4' 0.1065
1659     RA-H4' 0.1174
1660     RA-O4' -0.3548
1661     RA-C1' 0.0394
1662     RA-H1' 0.2007
1663     RA-C3' 0.2022
1664     RA-H3' 0.0615
1665     RA-C2' 0.0670
1666     RA-H2'1 0.0972
1667     RA-O2' -0.6139
1668     RA-HO'2 0.4186
1669     RA-O3' -0.5246
1670     RA-N9 -0.0251
1671     RA-C4 0.3053
1672     RA-C5 0.0515
1673     RA-N7 -0.6073
1674     RA-C8 0.2006
1675     RA-N3 -0.6997
1676     RA-C2 0.5875
1677     RA-N1 -0.7615
1678     RA-C6 0.7009
1679     RA-H2 0.0473
1680     RA-N6 -0.9019
1681     RA-H61 0.4115
1682     RA-H62 0.4115
1683     RA-H8 0.1553
1684     RG-O5' -0.4989
1685     RG-C5' 0.0558
1686     RG-H5'1 0.0679
1687     RG-H5'2 0.0679
1688     RG-C4' 0.1065
1689     RG-H4' 0.1174
1690     RG-O4' -0.3548
1691     RG-C1' 0.0191
1692     RG-H1' 0.2006
1693     RG-C3' 0.2022
1694     RG-H3' 0.0615
1695     RG-C2' 0.0670
1696     RG-H2'1 0.0972
1697     RG-O2' -0.6139
1698     RG-HO'2 0.4186
1699     RG-O3' -0.5246
1700     RG-N9 0.0492
1701     RG-C4 0.1222
1702     RG-C5 0.1744
1703     RG-N7 -0.5709
1704     RG-C8 0.1374
1705     RG-N3 -0.6323
1706     RG-C2 0.7657
1707     RG-N1 -0.4787
1708     RG-C6 0.4770
1709     RG-H1 0.3424
1710     RG-N2 -0.9672
1711     RG-H21 0.4364
1712     RG-H22 0.4364
1713     RG-O6 -0.5597
1714     RG-H8 0.1640
1715     RC-O5' -0.4989
1716     RC-C5' 0.0558
1717     RC-H5'1 0.0679
1718     RC-H5'2 0.0679
1719     RC-C4' 0.1065
1720     RC-H4' 0.1174
1721     RC-O4' -0.3548
1722     RC-C1' 0.0066
1723     RC-H1' 0.2029
1724     RC-C3' 0.2022
1725     RC-H3' 0.0615
1726     RC-C2' 0.0670
1727     RC-H2'1 0.0972
1728     RC-O2' -0.6139
1729     RC-HO'2 0.4186
1730     RC-O3' -0.5246
1731     RC-N1 -0.0484
1732     RC-C2 0.7538
1733     RC-N3 -0.7584
1734     RC-C4 0.8185
1735     RC-C5 -0.5215
1736     RC-C6 0.0053
1737     RC-O2 -0.6252
1738     RC-N4 -0.9530
1739     RC-H41 0.4234
1740     RC-H42 0.4234
1741     RC-H5 0.1928
1742     RC-H6 0.1958
1743     RU-O5' -0.4989
1744     RU-C5' 0.0558
1745     RU-H5'1 0.0679
1746     RU-H5'2 0.0679
1747     RU-C4' 0.1065
1748     RU-H4' 0.1174
1749     RU-O4' -0.3548
1750     RU-C1' 0.0674
1751     RU-H1' 0.1824
1752     RU-C3' 0.2022
1753     RU-H3' 0.0615
1754     RU-C2' 0.0670
1755     RU-H2'1 0.0972
1756     RU-O2' -0.6139
1757     RU-HO'2 0.4186
1758     RU-O3' -0.5246
1759     RU-N1 0.0418
1760     RU-C2 0.4687
1761     RU-N3 -0.3549
1762     RU-C4 0.5952
1763     RU-C5 -0.3635
1764     RU-C6 -0.1126
1765     RU-O2 -0.5477
1766     RU-H3 0.3154
1767     RU-O4 -0.5761
1768     RU-H5 0.1811
1769     RU-H6 0.2188
1770     DA-O5' -0.4954
1771     DA-C5' -0.0069
1772     DA-H5'1 0.0754
1773     DA-H5'2 0.0754
1774     DA-C4' 0.1629
1775     DA-H4' 0.1176
1776     DA-O4' -0.3691
1777     DA-C1' 0.0431
1778     DA-H1' 0.1838
1779     DA-C3' 0.0713
1780     DA-H3' 0.0985
1781     DA-C2' -0.0854
1782     DA-H2'1 0.0718
1783     DA-H2'2 0.0718
1784     DA-O3' -0.5232
1785     DA-N9 -0.0268
1786     DA-C4 0.3800
1787     DA-C5 0.0725
1788     DA-N7 -0.6175
1789     DA-C8 0.1607
1790     DA-N3 -0.7417
1791     DA-C2 0.5716
1792     DA-N1 -0.7624
1793     DA-C6 0.6897
1794     DA-H2 0.0598
1795     DA-N6 -0.9123
1796     DA-H61 0.4167
1797     DA-H62 0.4167
1798     DA-H8 0.1877
1799     DG-O5' -0.4954
1800     DG-C5' -0.0069
1801     DG-H5'1 0.0754
1802     DG-H5'2 0.0754
1803     DG-C4' 0.1629
1804     DG-H4' 0.1176
1805     DG-O4' -0.3691
1806     DG-C1' 0.0358
1807     DG-H1' 0.1746
1808     DG-C3' 0.0713
1809     DG-H3' 0.0985
1810     DG-C2' -0.0854
1811     DG-H2'1 0.0718
1812     DG-H2'2 0.0718
1813     DG-O3' -0.5232
1814     DG-N9 0.0577
1815     DG-C4 0.1814
1816     DG-C5 0.1991
1817     DG-N7 -0.5725
1818     DG-C8 0.0736
1819     DG-N3 -0.6636
1820     DG-C2 0.7432
1821     DG-N1 -0.5053
1822     DG-C6 0.4918
1823     DG-H1 0.3520
1824     DG-N2 -0.9230
1825     DG-H21 0.4235
1826     DG-H22 0.4235
1827     DG-O6 -0.5699
1828     DG-H8 0.1997
1829     DC-O5' -0.4954
1830     DC-C5' -0.0069
1831     DC-H5'1 0.0754
1832     DC-H5'2 0.0754
1833     DC-C4' 0.1629
1834     DC-H4' 0.1176
1835     DC-O4' -0.3691
1836     DC-C1' -0.0116
1837     DC-H1' 0.1963
1838     DC-C3' 0.0713
1839     DC-H3' 0.0985
1840     DC-C2' -0.0854
1841     DC-H2'1 0.0718
1842     DC-H2'2 0.0718
1843     DC-O3' -0.5232
1844     DC-N1 -0.0339
1845     DC-C2 0.7959
1846     DC-N3 -0.7748
1847     DC-C4 0.8439
1848     DC-C5 -0.5222
1849     DC-C6 -0.0183
1850     DC-O2 -0.6548
1851     DC-N4 -0.9773
1852     DC-H41 0.4314
1853     DC-H42 0.4314
1854     DC-H5 0.1863
1855     DC-H6 0.2293
1856     DT-O5' -0.4954
1857     DT-C5' -0.0069
1858     DT-H5'1 0.0754
1859     DT-H5'2 0.0754
1860     DT-C4' 0.1629
1861     DT-H4' 0.1176
1862     DT-O4' -0.3691
1863     DT-C1' 0.0680
1864     DT-H1' 0.1804
1865     DT-C3' 0.0713
1866     DT-H3' 0.0985
1867     DT-C2' -0.0854
1868     DT-H2'1 0.0718
1869     DT-H2'2 0.0718
1870     DT-O3' -0.5232
1871     DT-N1 -0.0239
1872     DT-C2 0.5677
1873     DT-N3 -0.4340
1874     DT-C4 0.5194
1875     DT-C5 0.0025
1876     DT-C6 -0.2209
1877     DT-O2 -0.5881
1878     DT-H3 0.3420
1879     DT-O4 -0.5563
1880     DT-C7 -0.2269
1881     DT-H7 0.0770
1882     DT-H6 0.2607
1883 gezelter 1278 R-Phosphodiester-P 1.1662
1884     R-Phosphodiester-O -0.7760
1885 gezelter 1270 R5H-O5' -0.6223
1886     R5H-H5T 0.4295
1887     R5P-O5' -0.6328
1888     R5P-P 0.9000
1889     R5P-OP -0.8200
1890     R3H-O3' -0.6541
1891     R3H-H3T 0.4376
1892     R3P-O3' -0.6565
1893     R3P-P 0.9000
1894     R3P-OP -0.8200
1895 gezelter 1278 D-Phosphodiester-P 1.1659
1896     D-Phosphodiester-O -0.7761
1897 gezelter 1270 D5H-O5' -0.6318
1898     D5H-H5T 0.4422
1899     D5P-O5' -0.6296
1900     D5P-P 0.9000
1901     D5P-OP -0.8200
1902     D3H-O3' -0.6549
1903     D3H-H3T 0.4396
1904     D3P-O3' -0.6553
1905     D3P-P 0.9000
1906     D3P-OP -0.8200
1907 gezelter 1278 TIP3P-O -0.834
1908 gezelter 1782 TIP3P-H 0.417
1909     O_TIP3P -0.834
1910     O_SPCE -0.8476
1911     O_SPC -0.82
1912     O_POL3 -0.7300
1913     H_TIP3P 0.417
1914     H_TIP4P 0.520
1915     H_TIP4P-Ew 0.52422
1916     H_TIP5P 0.241
1917     H_SPCE 0.4238
1918     H_SPC 0.42
1919     H_POL3 0.3650
1920     EP_TIP4P -1.040
1921     EP_TIP4P-Ew -1.04844
1922     EP_TIP5P -0.241
1923 gezelter 1270 Li+ 1.000
1924     Na+ 1.000
1925     K+ 1.000
1926     Rb+ 1.000
1927     Cs+ 1.000
1928     Mg+2 2.000
1929     Ca+2 2.000
1930     Zn+2 2.000
1931     Cl- -1.000
1932 kstocke1 1526 F- -1.000
1933     Br- -1.000
1934     I- -1.000
1935 gezelter 1270 end ChargeAtomTypes
1936    
1937    
1938    
1939     begin LennardJonesAtomTypes
1940     //name epsilon sigma
1941     CT 0.109400 3.399670
1942     C 0.086000 3.399670
1943     CA 0.086000 3.399670
1944     CM 0.086000 3.399670
1945     CC 0.086000 3.399670
1946     CV 0.086000 3.399670
1947     CW 0.086000 3.399670
1948     CR 0.086000 3.399670
1949     CB 0.086000 3.399670
1950     C* 0.086000 3.399670
1951     CN 0.086000 3.399670
1952     CK 0.086000 3.399670
1953     CQ 0.086000 3.399670
1954     N 0.170000 3.249999
1955     NA 0.170000 3.249999
1956     NB 0.170000 3.249999
1957     NC 0.170000 3.249999
1958     N* 0.170000 3.249999
1959     N2 0.170000 3.249999
1960     N3 0.170000 3.340870
1961     OW 0.152000 3.150752
1962 gezelter 1363 O_TIP3P 0.1521 3.15061
1963     O_TIP4P 0.1550 3.15365
1964     O_TIP4P-Ew 0.16275 3.16435
1965     O_TIP5P 0.16 3.12
1966     O_TIP5P-E 0.178 3.097
1967     O_SPCE 0.15532 3.16549
1968     O_SPC 0.15532 3.16549
1969 gezelter 1782 O_POL3 0.156 1.7980
1970 gezelter 1270 OH 0.210400 3.066473
1971     OS 0.170000 3.000012
1972     O 0.210000 2.959922
1973     O2 0.210000 2.959922
1974     S 0.250000 3.563595
1975     SH 0.250000 3.563595
1976     P 0.200000 3.741775
1977     H 0.015700 1.069078
1978     HW 0.000000 0.000178
1979     HO 0.000000 0.000178
1980     HS 0.015700 1.069078
1981     HA 0.015000 2.599642
1982     HC 0.015700 2.649533
1983     H1 0.015700 2.471353
1984     H2 0.015700 2.293173
1985     H3 0.015700 2.114994
1986     HP 0.015700 1.959977
1987     H4 0.015000 2.510553
1988     H5 0.015000 2.421463
1989     Li+ 0.018300 2.025904
1990     Na+ 0.002770 3.328398
1991     K+ 0.000328 4.736018
1992     Rb+ 0.000170 5.266993
1993     Cs+ 0.000081 6.049202
1994 gezelter 1278 Mg+2 0.894700 1.412253
1995     Ca+2 0.459789 3.052397
1996     Zn+2 0.012500 1.959977
1997 gezelter 1270 Cl- 0.100000 4.401040
1998     end LennardJonesAtomTypes
1999    
2000    
2001     begin BondTypes
2002     //Atom1 Atom2 Harmonic b0 kb (kcal/mol)
2003     CT CT Harmonic 1.526000 310.000000
2004     CT C Harmonic 1.522000 317.000000
2005     CT CA Harmonic 1.510000 317.000000
2006     CT CM Harmonic 1.510000 317.000000
2007     CT CC Harmonic 1.504000 317.000000
2008     CT C* Harmonic 1.495000 317.000000
2009     CT N Harmonic 1.449000 337.000000
2010     CT N* Harmonic 1.475000 337.000000
2011     CT N2 Harmonic 1.463000 337.000000
2012     CT N3 Harmonic 1.471000 367.000000
2013     CT OH Harmonic 1.410000 320.000000
2014     CT OS Harmonic 1.410000 320.000000
2015     CT S Harmonic 1.810000 227.000000
2016     CT SH Harmonic 1.810000 237.000000
2017     CT HC Harmonic 1.090000 340.000000
2018     CT H1 Harmonic 1.090000 340.000000
2019     CT H2 Harmonic 1.090000 340.000000
2020     CT H3 Harmonic 1.090000 340.000000
2021     CT HP Harmonic 1.090000 340.000000
2022     C CA Harmonic 1.409000 469.000000
2023     C CM Harmonic 1.444000 410.000000
2024     C CB Harmonic 1.419000 447.000000
2025     C N Harmonic 1.335000 490.000000
2026     C NA Harmonic 1.388000 418.000000
2027     C NC Harmonic 1.358000 457.000000
2028     C N* Harmonic 1.383000 424.000000
2029     C O Harmonic 1.229000 570.000000
2030     C O2 Harmonic 1.250000 656.000000
2031     CA CA Harmonic 1.400000 469.000000
2032     CA CM Harmonic 1.433000 427.000000
2033     CA CB Harmonic 1.404000 469.000000
2034     CA CN Harmonic 1.400000 469.000000
2035     CA NA Harmonic 1.381000 427.000000
2036     CA NC Harmonic 1.339000 483.000000
2037     CA N2 Harmonic 1.340000 481.000000
2038     CA OH Harmonic 1.364000 450.000000
2039     CA HA Harmonic 1.080000 367.000000
2040     CA H4 Harmonic 1.080000 367.000000
2041     CM CM Harmonic 1.350000 549.000000
2042     CM N* Harmonic 1.365000 448.000000
2043     CM HA Harmonic 1.080000 367.000000
2044     CM H4 Harmonic 1.080000 367.000000
2045     CM H5 Harmonic 1.080000 367.000000
2046     CC CV Harmonic 1.375000 512.000000
2047     CC CW Harmonic 1.371000 518.000000
2048     CC NA Harmonic 1.385000 422.000000
2049     CC NB Harmonic 1.394000 410.000000
2050     CV NB Harmonic 1.394000 410.000000
2051     CV H4 Harmonic 1.080000 367.000000
2052     CW C* Harmonic 1.352000 546.000000
2053     CW NA Harmonic 1.381000 427.000000
2054     CW H4 Harmonic 1.080000 367.000000
2055     CR NA Harmonic 1.343000 477.000000
2056     CR NB Harmonic 1.335000 488.000000
2057     CR H5 Harmonic 1.080000 367.000000
2058     CB CB Harmonic 1.370000 520.000000
2059     CB C* Harmonic 1.459000 388.000000
2060     CB CN Harmonic 1.419000 447.000000
2061     CB NB Harmonic 1.391000 414.000000
2062     CB NC Harmonic 1.354000 461.000000
2063     CB N* Harmonic 1.374000 436.000000
2064     C* HC Harmonic 1.080000 367.000000
2065     CN NA Harmonic 1.380000 428.000000
2066     CK NB Harmonic 1.304000 529.000000
2067     CK N* Harmonic 1.371000 440.000000
2068     CK H5 Harmonic 1.080000 367.000000
2069     CQ NC Harmonic 1.324000 502.000000
2070     CQ H5 Harmonic 1.080000 367.000000
2071     N H Harmonic 1.010000 434.000000
2072     NA H Harmonic 1.010000 434.000000
2073     N* H Harmonic 1.010000 434.000000
2074     N2 H Harmonic 1.010000 434.000000
2075     N3 H Harmonic 1.010000 434.000000
2076     OW HW Harmonic 0.957200 553.000000
2077     OH P Harmonic 1.610000 230.000000
2078     OH HO Harmonic 0.960000 553.000000
2079     OS P Harmonic 1.610000 230.000000
2080     OS HO Harmonic 0.960000 553.000000
2081     O2 P Harmonic 1.480000 525.000000
2082     S S Harmonic 2.038000 166.000000
2083     SH HS Harmonic 1.336000 274.000000
2084     HW HW Harmonic 1.513600 553.000000
2085 gezelter 1278 end BondTypes
2086 gezelter 1270
2087    
2088     begin BendTypes
2089     //Atom1 Atom2 Atom3 Harmonic Theta Ktheta
2090     CT CT CT Harmonic 109.500000 80.000000
2091     CT CT C Harmonic 111.100000 126.000000
2092     CT CT CA Harmonic 114.000000 126.000000
2093     CT CT CC Harmonic 113.100000 126.000000
2094     CT CT C* Harmonic 115.600000 126.000000
2095     CT CT N Harmonic 109.700000 160.000000
2096     CT CT N* Harmonic 109.500000 100.000000
2097     CT CT N2 Harmonic 111.200000 160.000000
2098     CT CT N3 Harmonic 111.200000 160.000000
2099     CT CT OH Harmonic 109.500000 100.000000
2100     CT CT OS Harmonic 109.500000 100.000000
2101     CT CT S Harmonic 114.700000 100.000000
2102     CT CT SH Harmonic 108.600000 100.000000
2103     CT CT HC Harmonic 109.500000 100.000000
2104     CT CT H1 Harmonic 109.500000 100.000000
2105     CT CT H2 Harmonic 109.500000 100.000000
2106     CT CT HP Harmonic 109.500000 100.000000
2107     C CT N Harmonic 110.100000 126.000000
2108     C CT N3 Harmonic 111.200000 160.000000
2109     C CT HC Harmonic 109.500000 100.000000
2110     C CT H1 Harmonic 109.500000 100.000000
2111     C CT HP Harmonic 109.500000 100.000000
2112     CA CT HC Harmonic 109.500000 100.000000
2113     CM CT HC Harmonic 109.500000 100.000000
2114     CC CT HC Harmonic 109.500000 100.000000
2115     C* CT HC Harmonic 109.500000 100.000000
2116     N CT H1 Harmonic 109.500000 100.000000
2117     N* CT OS Harmonic 109.500000 100.000000
2118     N* CT H1 Harmonic 109.500000 100.000000
2119     N* CT H2 Harmonic 109.500000 100.000000
2120     N2 CT H1 Harmonic 109.500000 100.000000
2121     N3 CT H1 Harmonic 109.500000 100.000000
2122     N3 CT HP Harmonic 109.500000 100.000000
2123     OH CT H1 Harmonic 109.500000 100.000000
2124     OS CT H1 Harmonic 109.500000 100.000000
2125     OS CT H2 Harmonic 109.500000 100.000000
2126     S CT H1 Harmonic 109.500000 100.000000
2127     SH CT H1 Harmonic 109.500000 100.000000
2128     HC CT HC Harmonic 109.500000 70.000000
2129     H1 CT H1 Harmonic 109.500000 70.000000
2130     H2 CT H2 Harmonic 109.500000 70.000000
2131     HP CT HP Harmonic 109.500000 70.000000
2132     CT C N Harmonic 116.600000 140.000000
2133     CT C O Harmonic 120.400000 160.000000
2134     CT C O2 Harmonic 117.000000 140.000000
2135     CA C CA Harmonic 120.000000 126.000000
2136     CM C NA Harmonic 114.100000 140.000000
2137     CM C O Harmonic 125.300000 160.000000
2138     CB C NA Harmonic 111.300000 140.000000
2139     CB C O Harmonic 128.800000 160.000000
2140     N C O Harmonic 122.900000 160.000000
2141     NA C N* Harmonic 115.400000 140.000000
2142     NA C O Harmonic 120.600000 160.000000
2143     NC C N* Harmonic 118.600000 140.000000
2144     NC C O Harmonic 122.500000 160.000000
2145     N* C O Harmonic 120.900000 160.000000
2146 gezelter 2046 N C N Harmonic 115.4 140.0 #biotin
2147 gezelter 1270 O C O Harmonic 126.000000 160.000000
2148     O2 C O2 Harmonic 126.000000 160.000000
2149     CT CA CA Harmonic 120.000000 140.000000
2150     C CA CA Harmonic 120.000000 126.000000
2151     C CA HA Harmonic 120.000000 100.000000
2152     CA CA CA Harmonic 120.000000 126.000000
2153     CA CA CB Harmonic 120.000000 126.000000
2154     CA CA CN Harmonic 120.000000 126.000000
2155     CA CA OH Harmonic 120.000000 140.000000
2156     CA CA HA Harmonic 120.000000 100.000000
2157     CA CA H4 Harmonic 120.000000 100.000000
2158     CM CA NC Harmonic 121.500000 140.000000
2159     CM CA N2 Harmonic 120.100000 140.000000
2160     CB CA NC Harmonic 117.300000 140.000000
2161     CB CA N2 Harmonic 123.500000 140.000000
2162     CB CA HA Harmonic 120.000000 100.000000
2163     CB CA H4 Harmonic 120.000000 100.000000
2164     CN CA HA Harmonic 120.000000 100.000000
2165     NA CA NC Harmonic 123.300000 140.000000
2166     NA CA N2 Harmonic 116.000000 140.000000
2167     NC CA N2 Harmonic 119.300000 140.000000
2168     N2 CA N2 Harmonic 120.000000 140.000000
2169     CT CM C Harmonic 119.700000 140.000000
2170     CT CM CM Harmonic 119.700000 140.000000
2171     C CM CM Harmonic 120.700000 126.000000
2172     C CM HA Harmonic 119.700000 100.000000
2173     C CM H4 Harmonic 119.700000 100.000000
2174     CA CM CM Harmonic 117.000000 126.000000
2175     CA CM HA Harmonic 123.300000 100.000000
2176     CA CM H4 Harmonic 123.300000 100.000000
2177     CM CM N* Harmonic 121.200000 140.000000
2178     CM CM HA Harmonic 119.700000 100.000000
2179     CM CM H4 Harmonic 119.700000 100.000000
2180     N* CM H4 Harmonic 119.100000 100.000000
2181     CT CC CV Harmonic 120.000000 140.000000
2182     CT CC CW Harmonic 120.000000 140.000000
2183     CT CC NA Harmonic 120.000000 140.000000
2184     CT CC NB Harmonic 120.000000 140.000000
2185     CV CC NA Harmonic 120.000000 140.000000
2186     CW CC NA Harmonic 120.000000 140.000000
2187     CW CC NB Harmonic 120.000000 140.000000
2188     CC CV NB Harmonic 120.000000 140.000000
2189     CC CV H4 Harmonic 120.000000 100.000000
2190     NB CV H4 Harmonic 120.000000 100.000000
2191     CC CW NA Harmonic 120.000000 140.000000
2192     CC CW H4 Harmonic 120.000000 100.000000
2193     C* CW NA Harmonic 108.700000 140.000000
2194     C* CW H4 Harmonic 120.000000 100.000000
2195     NA CW H4 Harmonic 120.000000 100.000000
2196     NA CR NA Harmonic 120.000000 140.000000
2197     NA CR NB Harmonic 120.000000 140.000000
2198     NA CR H5 Harmonic 120.000000 100.000000
2199     NB CR H5 Harmonic 120.000000 100.000000
2200     C CB CB Harmonic 119.200000 126.000000
2201     C CB NB Harmonic 130.000000 140.000000
2202     CA CB CB Harmonic 117.300000 126.000000
2203     CA CB C* Harmonic 134.900000 126.000000
2204     CA CB CN Harmonic 116.200000 126.000000
2205     CA CB NB Harmonic 132.400000 140.000000
2206     CB CB NB Harmonic 110.400000 140.000000
2207     CB CB NC Harmonic 127.700000 140.000000
2208     CB CB N* Harmonic 106.200000 140.000000
2209     C* CB CN Harmonic 108.800000 126.000000
2210     NC CB N* Harmonic 126.200000 140.000000
2211     CT C* CW Harmonic 125.000000 140.000000
2212     CT C* CB Harmonic 128.600000 140.000000
2213     CW C* CB Harmonic 106.400000 126.000000
2214     CA CN CB Harmonic 122.700000 126.000000
2215     CA CN NA Harmonic 132.800000 140.000000
2216     CB CN NA Harmonic 104.400000 140.000000
2217     NB CK N* Harmonic 113.900000 140.000000
2218     NB CK H5 Harmonic 123.050000 100.000000
2219     N* CK H5 Harmonic 123.050000 100.000000
2220     NC CQ NC Harmonic 129.100000 140.000000
2221     NC CQ H5 Harmonic 115.450000 100.000000
2222     CT N CT Harmonic 118.000000 100.000000
2223     CT N C Harmonic 121.900000 100.000000
2224     CT N H Harmonic 118.040000 100.000000
2225     C N H Harmonic 120.000000 100.000000
2226     H N H Harmonic 120.000000 70.000000
2227     C NA C Harmonic 126.400000 140.000000
2228     C NA CA Harmonic 125.200000 140.000000
2229     C NA H Harmonic 116.800000 100.000000
2230     CA NA H Harmonic 118.000000 100.000000
2231     CC NA CR Harmonic 120.000000 140.000000
2232     CC NA H Harmonic 120.000000 100.000000
2233     CW NA CR Harmonic 120.000000 140.000000
2234     CW NA CN Harmonic 111.600000 140.000000
2235     CW NA H Harmonic 120.000000 100.000000
2236     CR NA H Harmonic 120.000000 100.000000
2237     CN NA H Harmonic 123.100000 100.000000
2238     CC NB CR Harmonic 117.000000 140.000000
2239     CV NB CR Harmonic 117.000000 140.000000
2240     CB NB CK Harmonic 103.800000 140.000000
2241     C NC CA Harmonic 120.500000 140.000000
2242     CA NC CB Harmonic 112.200000 140.000000
2243     CA NC CQ Harmonic 118.600000 140.000000
2244     CB NC CQ Harmonic 111.000000 140.000000
2245     CT N* C Harmonic 117.600000 140.000000
2246     CT N* CM Harmonic 121.200000 140.000000
2247     CT N* CB Harmonic 125.800000 140.000000
2248     CT N* CK Harmonic 128.800000 140.000000
2249     C N* CM Harmonic 121.600000 140.000000
2250     C N* H Harmonic 119.200000 100.000000
2251     CM N* H Harmonic 121.200000 100.000000
2252     CB N* CK Harmonic 105.400000 140.000000
2253     CB N* H Harmonic 125.800000 100.000000
2254     CK N* H Harmonic 128.800000 100.000000
2255     CT N2 CA Harmonic 123.200000 100.000000
2256     CT N2 H Harmonic 118.400000 100.000000
2257     CA N2 H Harmonic 120.000000 100.000000
2258     H N2 H Harmonic 120.000000 70.000000
2259     CT N3 CT Harmonic 109.500000 100.000000
2260     CT N3 H Harmonic 109.500000 100.000000
2261     H N3 H Harmonic 109.500000 70.000000
2262     HW OW HW Harmonic 104.520000 200.000000
2263     CT OH HO Harmonic 108.500000 110.000000
2264     CA OH HO Harmonic 113.000000 100.000000
2265     P OH HO Harmonic 108.500000 90.000000
2266     CT OS CT Harmonic 109.500000 120.000000
2267     CT OS P Harmonic 120.500000 200.000000
2268     P OS P Harmonic 120.500000 200.000000
2269     CT S CT Harmonic 98.900000 124.000000
2270     CT S S Harmonic 103.700000 136.000000
2271     CT SH HS Harmonic 96.000000 86.000000
2272     HS SH HS Harmonic 92.070000 70.000000
2273     OH P OS Harmonic 102.600000 90.000000
2274     OH P O2 Harmonic 108.230000 90.000000
2275     OS P OS Harmonic 102.600000 90.000000
2276     OS P O2 Harmonic 108.230000 200.000000
2277     O2 P O2 Harmonic 119.900000 280.000000
2278     OW HW HW Harmonic 127.740000 0.000000
2279 gezelter 1414 C OH HO Harmonic 113.00 50.00000
2280 gezelter 1270 end BendTypes
2281    
2282    
2283     begin TorsionTypes
2284     //Atom1 Atom2 Atom3 Atom4 Charmm Kchi n delta [Kchi n delta]
2285     CT CT CT CT Charmm 0.200000 1 180.000000 0.25 2 180 0.18 3 0
2286     CT CT CT C Charmm 0.156000 3 0.000000
2287     CT CT CT N Charmm 0.156000 3 0.000000
2288     CT CT CT N* Charmm 0.156000 3 0.000000
2289     CT CT CT N2 Charmm 0.156000 3 0.000000
2290     CT CT CT N3 Charmm 0.156000 3 0.000000
2291     CT CT CT OH Charmm 0.156000 3 0.000000
2292     CT CT CT OS Charmm 0.156000 3 0.000000
2293     CT CT CT S Charmm 0.156000 3 0.000000
2294     CT CT CT HC Charmm 0.160000 3 0.000000
2295     CT CT CT H1 Charmm 0.156000 3 0.000000
2296     CT CT CT H2 Charmm 0.156000 3 0.000000
2297     CT CT CT HP Charmm 0.156000 3 0.000000
2298     C CT CT C Charmm 0.156000 3 0.000000
2299     C CT CT CA Charmm 0.156000 3 0.000000
2300     C CT CT CC Charmm 0.156000 3 0.000000
2301     C CT CT C* Charmm 0.156000 3 0.000000
2302     C CT CT N Charmm 0.156000 3 0.000000
2303     C CT CT N3 Charmm 0.156000 3 0.000000
2304     C CT CT OH Charmm 0.156000 3 0.000000
2305     C CT CT S Charmm 0.156000 3 0.000000
2306     C CT CT SH Charmm 0.156000 3 0.000000
2307     C CT CT HC Charmm 0.156000 3 0.000000
2308     C CT CT H1 Charmm 0.156000 3 0.000000
2309     C CT CT HP Charmm 0.156000 3 0.000000
2310     CA CT CT N Charmm 0.156000 3 0.000000
2311     CA CT CT N3 Charmm 0.156000 3 0.000000
2312     CA CT CT H1 Charmm 0.156000 3 0.000000
2313     CA CT CT HP Charmm 0.156000 3 0.000000
2314     CC CT CT N Charmm 0.156000 3 0.000000
2315     CC CT CT N3 Charmm 0.156000 3 0.000000
2316     CC CT CT H1 Charmm 0.156000 3 0.000000
2317     CC CT CT HP Charmm 0.156000 3 0.000000
2318     C* CT CT N Charmm 0.156000 3 0.000000
2319     C* CT CT N3 Charmm 0.156000 3 0.000000
2320     C* CT CT H1 Charmm 0.156000 3 0.000000
2321     C* CT CT HP Charmm 0.156000 3 0.000000
2322     N CT CT OH Charmm 0.156000 3 0.000000
2323     N CT CT S Charmm 0.156000 3 0.000000
2324     N CT CT SH Charmm 0.156000 3 0.000000
2325     N CT CT HC Charmm 0.156000 3 0.000000
2326     N CT CT H1 Charmm 0.156000 3 0.000000
2327     N* CT CT OH Charmm 0.156000 3 0.000000
2328     N* CT CT HC Charmm 0.156000 3 0.000000
2329     N* CT CT H1 Charmm 0.156000 3 0.000000
2330     N2 CT CT HC Charmm 0.156000 3 0.000000
2331     N3 CT CT OH Charmm 0.156000 3 0.000000
2332     N3 CT CT S Charmm 0.156000 3 0.000000
2333     N3 CT CT SH Charmm 0.156000 3 0.000000
2334     N3 CT CT HC Charmm 0.156000 3 0.000000
2335     N3 CT CT H1 Charmm 0.156000 3 0.000000
2336     OH CT CT N* Charmm 0.156000 3 0.000000
2337     OH CT CT OH Charmm 0.144000 3 0.000000 1.175 2 0
2338     OH CT CT OS Charmm 0.144000 3 0.000000 1.175 2 0
2339     OH CT CT HC Charmm 0.156000 3 0.000000 0.25 1 0
2340     OH CT CT H1 Charmm 0.156000 3 0.000000
2341     OH CT CT H2 Charmm 0.156000 3 0.000000
2342     OH CT CT HP Charmm 0.156000 3 0.000000
2343     OS CT CT OS Charmm 0.144000 3 0.000000 1.175 2 0
2344     OS CT CT HC Charmm 0.156000 3 0.000000 0.25 1 0
2345     OS CT CT H1 Charmm 0.156000 3 0.000000
2346     S CT CT HC Charmm 0.156000 3 0.000000
2347     S CT CT H1 Charmm 0.156000 3 0.000000
2348     S CT CT HP Charmm 0.156000 3 0.000000
2349     SH CT CT H1 Charmm 0.156000 3 0.000000
2350     SH CT CT HP Charmm 0.156000 3 0.000000
2351     HC CT CT HC Charmm 0.150000 3 0.000000
2352     HC CT CT H1 Charmm 0.156000 3 0.000000
2353     HC CT CT H2 Charmm 0.156000 3 0.000000
2354     HC CT CT HP Charmm 0.156000 3 0.000000
2355     H1 CT CT H1 Charmm 0.156000 3 0.000000
2356     H1 CT CT H2 Charmm 0.156000 3 0.000000
2357     H1 CT CT HP Charmm 0.156000 3 0.000000
2358     CT CT C N Charmm 0.070000 2 0.000000 0.1 4 0
2359     CT CT C O Charmm 0.000000 2 0.000000
2360     CT CT C O2 Charmm 0.000000 2 0.000000
2361     N CT C N Charmm 1.700000 1 180.000000 2.0 2 180
2362     N CT C O Charmm 0.000000 2 0.000000
2363     N CT C O2 Charmm 0.000000 2 0.000000
2364     N3 CT C N Charmm 0.000000 2 0.000000
2365     N3 CT C O Charmm 0.000000 2 0.000000
2366     N3 CT C O2 Charmm 0.000000 2 0.000000
2367     HC CT C N Charmm 0.000000 2 0.000000
2368     HC CT C O Charmm 0.800000 1 0.000000 0.08 3 180
2369     HC CT C O2 Charmm 0.000000 2 0.000000
2370     H1 CT C N Charmm 0.000000 2 0.000000
2371     H1 CT C O Charmm 0.800000 1 0.000000 0.08 3 180
2372     H1 CT C O2 Charmm 0.000000 2 0.000000
2373     CT CT CA CA Charmm 0.000000 2 0.000000
2374     HC CT CA CA Charmm 0.000000 2 0.000000
2375     HC CT CM C Charmm 0.000000 3 0.000000
2376     HC CT CM CM Charmm 1.150000 1 0.000000 0.38 3 180
2377     CT CT CC CV Charmm 0.000000 2 0.000000
2378     CT CT CC CW Charmm 0.000000 2 0.000000
2379     CT CT CC NA Charmm 0.000000 2 0.000000
2380     CT CT CC NB Charmm 0.000000 2 0.000000
2381     HC CT CC CV Charmm 0.000000 2 0.000000
2382     HC CT CC CW Charmm 0.000000 2 0.000000
2383     HC CT CC NA Charmm 0.000000 2 0.000000
2384     HC CT CC NB Charmm 0.000000 2 0.000000
2385     CT CT C* CW Charmm 0.000000 2 0.000000
2386     CT CT C* CB Charmm 0.000000 2 0.000000
2387     HC CT C* CW Charmm 0.000000 2 0.000000
2388     HC CT C* CB Charmm 0.000000 2 0.000000
2389     CT CT N CT Charmm 0.000000 2 0.000000
2390     CT CT N C Charmm 0.530000 1 0.000000 0.15 3 180 0.5 4 180
2391     CT CT N H Charmm 0.000000 2 0.000000
2392     C CT N CT Charmm 0.000000 2 0.000000
2393     C CT N C Charmm 0.800000 1 0.000000 0.85 2 180
2394     C CT N H Charmm 0.000000 2 0.000000
2395     H1 CT N CT Charmm 0.000000 2 0.000000
2396     H1 CT N C Charmm 0.000000 2 0.000000
2397     H1 CT N H Charmm 0.000000 2 0.000000
2398     CT CT N* C Charmm 0.000000 2 0.000000
2399     CT CT N* CM Charmm 0.000000 2 0.000000
2400     CT CT N* CB Charmm 0.000000 2 0.000000
2401     CT CT N* CK Charmm 0.000000 2 0.000000
2402     OS CT N* C Charmm 0.000000 2 0.000000
2403     OS CT N* CM Charmm 0.000000 2 180.000000 2.5 1 0
2404     OS CT N* CB Charmm 0.000000 2 0.000000
2405     OS CT N* CK Charmm 0.000000 2 180.000000 2.5 1 0
2406     H2 CT N* C Charmm 0.000000 2 0.000000
2407     H2 CT N* CM Charmm 0.000000 2 0.000000
2408     H2 CT N* CB Charmm 0.000000 2 0.000000
2409     H2 CT N* CK Charmm 0.000000 2 0.000000
2410     CT CT N2 CA Charmm 0.000000 3 0.000000
2411     CT CT N2 H Charmm 0.000000 3 0.000000
2412     H1 CT N2 CA Charmm 0.000000 3 0.000000
2413     H1 CT N2 H Charmm 0.000000 3 0.000000
2414     CT CT N3 CT Charmm 0.156000 3 0.000000
2415     CT CT N3 H Charmm 0.156000 3 0.000000
2416     C CT N3 CT Charmm 0.156000 3 0.000000
2417     C CT N3 H Charmm 0.156000 3 0.000000
2418     H1 CT N3 CT Charmm 0.156000 3 0.000000
2419     H1 CT N3 H Charmm 0.156000 3 0.000000
2420     HP CT N3 CT Charmm 0.156000 3 0.000000
2421     HP CT N3 H Charmm 0.156000 3 0.000000
2422     CT CT OH HO Charmm 0.025000 1 0.000000 0.16 3 0
2423     H1 CT OH HO Charmm 0.167000 3 0.000000
2424     CT CT OS CT Charmm 0.383000 3 0.000000 0.1 2 180
2425     CT CT OS C Charmm 0.383000 3 0.000000 0.8 1 180
2426     CT CT OS P Charmm 0.383000 3 0.000000
2427     N* CT OS CT Charmm 0.383000 3 0.000000 0.65 2 0
2428     OS CT OS CT Charmm 1.350000 1 180.000000 0.85 3 180 0.1 3 0
2429     OS CT OS CT Charmm 0.850000 2 180.000000 0.1 3 0
2430     OS CT OS CT Charmm 0.850000 2 180.000000 0.1 3 0
2431     H1 CT OS CT Charmm 0.383000 3 0.000000
2432     H1 CT OS P Charmm 0.383000 3 0.000000
2433     H2 CT OS CT Charmm 0.383000 3 0.000000
2434     CT CT S CT Charmm 0.333000 3 0.000000
2435     CT CT S S Charmm 0.333000 3 0.000000
2436     H1 CT S CT Charmm 0.333000 3 0.000000
2437     H1 CT S S Charmm 0.333000 3 0.000000
2438     CT CT SH HS Charmm 0.250000 3 0.000000
2439     H1 CT SH HS Charmm 0.250000 3 0.000000
2440     NA C CM CT Charmm 2.175000 2 180.000000
2441     NA C CM CM Charmm 2.175000 2 180.000000
2442     NA C CM HA Charmm 2.175000 2 180.000000
2443     O C CM CT Charmm 2.175000 2 180.000000
2444     O C CM CM Charmm 2.175000 2 180.000000 0.3 3 0
2445     O C CM HA Charmm 2.175000 2 180.000000
2446     NA C CB CB Charmm 3.000000 2 180.000000
2447     NA C CB NB Charmm 3.000000 2 180.000000
2448     O C CB CB Charmm 3.000000 2 180.000000
2449     O C CB NB Charmm 3.000000 2 180.000000
2450     CT C N CT Charmm 2.500000 2 180.000000
2451     CT C N H Charmm 2.500000 2 180.000000
2452     O C N CT Charmm 2.500000 2 180.000000
2453     O C N H Charmm 2.000000 1 0.000000 2.5 2 180
2454     CM C NA C Charmm 1.350000 2 180.000000
2455     CM C NA H Charmm 1.350000 2 180.000000
2456     CB C NA CA Charmm 1.350000 2 180.000000
2457     CB C NA H Charmm 1.350000 2 180.000000
2458     N* C NA C Charmm 1.350000 2 180.000000
2459     N* C NA H Charmm 1.350000 2 180.000000
2460     O C NA C Charmm 1.350000 2 180.000000
2461     O C NA CA Charmm 1.350000 2 180.000000
2462     O C NA H Charmm 1.350000 2 180.000000
2463     N* C NC CA Charmm 4.000000 2 180.000000
2464     O C NC CA Charmm 4.000000 2 180.000000
2465     NA C N* CT Charmm 1.450000 2 180.000000
2466     NA C N* CM Charmm 1.450000 2 180.000000
2467     NC C N* CT Charmm 1.450000 2 180.000000
2468     NC C N* CM Charmm 1.450000 2 180.000000
2469     O C N* CT Charmm 1.450000 2 180.000000
2470     O C N* CM Charmm 1.450000 2 180.000000
2471     O C OH HO Charmm 1.900000 1 0.000000 2.3 2 180
2472     O C OS CT Charmm 1.400000 1 180.000000 2.7 2 180
2473     CT CA CA CA Charmm 3.625000 2 180.000000
2474     CT CA CA HA Charmm 3.625000 2 180.000000
2475     CA CA CA CA Charmm 3.625000 2 180.000000
2476     CA CA CA CB Charmm 3.625000 2 180.000000
2477     CA CA CA CN Charmm 3.625000 2 180.000000
2478     CA CA CA OH Charmm 3.625000 2 180.000000
2479     CA CA CA HA Charmm 3.625000 2 180.000000
2480     CB CA CA HA Charmm 3.625000 2 180.000000
2481     CN CA CA HA Charmm 3.625000 2 180.000000
2482     OH CA CA HA Charmm 3.625000 2 180.000000
2483     HA CA CA HA Charmm 3.625000 2 180.000000
2484     NC CA CM CM Charmm 2.550000 2 180.000000
2485     NC CA CM HA Charmm 2.550000 2 180.000000
2486     N2 CA CM CM Charmm 2.550000 2 180.000000
2487     N2 CA CM HA Charmm 2.550000 2 180.000000
2488     CA CA CB C* Charmm 3.500000 2 180.000000
2489     CA CA CB CN Charmm 3.500000 2 180.000000
2490     NC CA CB CB Charmm 3.500000 2 180.000000
2491     NC CA CB NB Charmm 3.500000 2 180.000000
2492     N2 CA CB CB Charmm 3.500000 2 180.000000
2493     N2 CA CB NB Charmm 3.500000 2 180.000000
2494     HA CA CB C* Charmm 3.500000 2 180.000000
2495     HA CA CB CN Charmm 3.500000 2 180.000000
2496     CA CA CN CB Charmm 3.625000 2 180.000000
2497     CA CA CN NA Charmm 3.625000 2 180.000000
2498     HA CA CN CB Charmm 3.625000 2 180.000000
2499     HA CA CN NA Charmm 3.625000 2 180.000000
2500     NC CA NA C Charmm 1.500000 2 180.000000
2501     NC CA NA H Charmm 1.500000 2 180.000000
2502     N2 CA NA C Charmm 1.500000 2 180.000000
2503     N2 CA NA H Charmm 1.500000 2 180.000000
2504     CM CA NC C Charmm 4.800000 2 180.000000
2505     CB CA NC CQ Charmm 4.800000 2 180.000000
2506     NA CA NC CB Charmm 4.800000 2 180.000000
2507     N2 CA NC C Charmm 4.800000 2 180.000000
2508     N2 CA NC CB Charmm 4.800000 2 180.000000
2509     N2 CA NC CQ Charmm 4.800000 2 180.000000
2510     CM CA N2 H Charmm 2.400000 2 180.000000
2511     CB CA N2 H Charmm 2.400000 2 180.000000
2512     NA CA N2 H Charmm 2.400000 2 180.000000
2513     NC CA N2 H Charmm 2.400000 2 180.000000
2514     N2 CA N2 CT Charmm 2.400000 2 180.000000
2515     N2 CA N2 H Charmm 2.400000 2 180.000000
2516     CA CA OH HO Charmm 0.900000 2 180.000000
2517     CT CM CM CT Charmm 1.900000 1 180.000000 6.65 2 180
2518     CT CM CM N* Charmm 6.650000 2 180.000000
2519     CT CM CM H4 Charmm 6.650000 2 180.000000
2520     C CM CM N* Charmm 6.650000 2 180.000000
2521     C CM CM H4 Charmm 6.650000 2 180.000000
2522     CA CM CM N* Charmm 6.650000 2 180.000000
2523     CA CM CM H4 Charmm 6.650000 2 180.000000
2524     HA CM CM N* Charmm 6.650000 2 180.000000
2525     HA CM CM H4 Charmm 6.650000 2 180.000000
2526     CM CM N* CT Charmm 1.850000 2 180.000000
2527     CM CM N* C Charmm 1.850000 2 180.000000
2528     H4 CM N* CT Charmm 1.850000 2 180.000000
2529     H4 CM N* C Charmm 1.850000 2 180.000000
2530     CT CC CV NB Charmm 5.150000 2 180.000000
2531     CT CC CV H4 Charmm 5.150000 2 180.000000
2532     NA CC CV NB Charmm 5.150000 2 180.000000
2533     NA CC CV H4 Charmm 5.150000 2 180.000000
2534     CT CC CW NA Charmm 5.375000 2 180.000000
2535     CT CC CW H4 Charmm 5.375000 2 180.000000
2536     NA CC CW NA Charmm 5.375000 2 180.000000
2537     NA CC CW H4 Charmm 5.375000 2 180.000000
2538     NB CC CW NA Charmm 5.375000 2 180.000000
2539     NB CC CW H4 Charmm 5.375000 2 180.000000
2540     CT CC NA CR Charmm 1.400000 2 180.000000
2541     CT CC NA H Charmm 1.400000 2 180.000000
2542     CV CC NA CR Charmm 1.400000 2 180.000000
2543     CV CC NA H Charmm 1.400000 2 180.000000
2544     CW CC NA CR Charmm 1.400000 2 180.000000
2545     CW CC NA H Charmm 1.400000 2 180.000000
2546     CT CC NB CR Charmm 2.400000 2 180.000000
2547     CW CC NB CR Charmm 2.400000 2 180.000000
2548     CC CV NB CR Charmm 2.400000 2 180.000000
2549     H4 CV NB CR Charmm 2.400000 2 180.000000
2550     NA CW C* CT Charmm 6.525000 2 180.000000
2551     NA CW C* CB Charmm 6.525000 2 180.000000
2552     H4 CW C* CT Charmm 6.525000 2 180.000000
2553     H4 CW C* CB Charmm 6.525000 2 180.000000
2554     CC CW NA CR Charmm 1.500000 2 180.000000
2555     CC CW NA H Charmm 1.500000 2 180.000000
2556     C* CW NA CN Charmm 1.500000 2 180.000000
2557     C* CW NA H Charmm 1.500000 2 180.000000
2558     H4 CW NA CR Charmm 1.500000 2 180.000000
2559     H4 CW NA CN Charmm 1.500000 2 180.000000
2560     H4 CW NA H Charmm 1.500000 2 180.000000
2561     NA CR NA CC Charmm 2.325000 2 180.000000
2562     NA CR NA CW Charmm 2.325000 2 180.000000
2563     NA CR NA H Charmm 2.325000 2 180.000000
2564     NB CR NA CC Charmm 2.325000 2 180.000000
2565     NB CR NA CW Charmm 2.325000 2 180.000000
2566     NB CR NA H Charmm 2.325000 2 180.000000
2567     H5 CR NA CC Charmm 2.325000 2 180.000000
2568     H5 CR NA CW Charmm 2.325000 2 180.000000
2569     H5 CR NA H Charmm 2.325000 2 180.000000
2570     NA CR NB CC Charmm 5.000000 2 180.000000
2571     NA CR NB CV Charmm 5.000000 2 180.000000
2572     H5 CR NB CC Charmm 5.000000 2 180.000000
2573     H5 CR NB CV Charmm 5.000000 2 180.000000
2574     C CB CB NC Charmm 5.450000 2 180.000000
2575     C CB CB N* Charmm 5.450000 2 180.000000
2576     CA CB CB NC Charmm 5.450000 2 180.000000
2577     CA CB CB N* Charmm 5.450000 2 180.000000
2578     NB CB CB NC Charmm 5.450000 2 180.000000
2579     NB CB CB N* Charmm 5.450000 2 180.000000
2580     CA CB C* CT Charmm 1.675000 2 180.000000
2581     CA CB C* CW Charmm 1.675000 2 180.000000
2582     CN CB C* CT Charmm 1.675000 2 180.000000
2583     CN CB C* CW Charmm 1.675000 2 180.000000
2584     CA CB CN CA Charmm 3.000000 2 180.000000
2585     CA CB CN NA Charmm 3.000000 2 180.000000
2586     C* CB CN CA Charmm 3.000000 2 180.000000
2587     C* CB CN NA Charmm 3.000000 2 180.000000
2588     C CB NB CK Charmm 2.550000 2 180.000000
2589     CA CB NB CK Charmm 2.550000 2 180.000000
2590     CB CB NB CK Charmm 2.550000 2 180.000000
2591     CB CB NC CA Charmm 4.150000 2 180.000000
2592     CB CB NC CQ Charmm 4.150000 2 180.000000
2593     N* CB NC CA Charmm 4.150000 2 180.000000
2594     N* CB NC CQ Charmm 4.150000 2 180.000000
2595     CB CB N* CT Charmm 1.650000 2 180.000000
2596     CB CB N* CK Charmm 1.650000 2 180.000000
2597     NC CB N* CT Charmm 1.650000 2 180.000000
2598     NC CB N* CK Charmm 1.650000 2 180.000000
2599     CA CN NA CW Charmm 1.525000 2 180.000000
2600     CA CN NA H Charmm 1.525000 2 180.000000
2601     CB CN NA CW Charmm 1.525000 2 180.000000
2602     CB CN NA H Charmm 1.525000 2 180.000000
2603     N* CK NB CB Charmm 10.000000 2 180.000000
2604     H5 CK NB CB Charmm 10.000000 2 180.000000
2605     NB CK N* CT Charmm 1.700000 2 180.000000
2606     NB CK N* CB Charmm 1.700000 2 180.000000
2607     H5 CK N* CT Charmm 1.700000 2 180.000000
2608     H5 CK N* CB Charmm 1.700000 2 180.000000
2609     NC CQ NC CA Charmm 6.800000 2 180.000000
2610     NC CQ NC CB Charmm 6.800000 2 180.000000
2611     H5 CQ NC CA Charmm 6.800000 2 180.000000
2612     H5 CQ NC CB Charmm 6.800000 2 180.000000
2613     HO OH P OS Charmm 0.250000 3 0.000000
2614     HO OH P O2 Charmm 0.250000 3 0.000000
2615     CT OS P OH Charmm 0.250000 3 0.000000 1.2 2 0
2616     CT OS P OS Charmm 0.250000 3 0.000000 1.2 2 0
2617     CT OS P O2 Charmm 0.250000 3 0.000000
2618     CT S S CT Charmm 3.500000 2 0.000000 0.6 3 0
2619 gezelter 1414 CT C OH HO Charmm 2.30000000 2 180.0
2620 gezelter 1270 end TorsionTypes
2621    
2622    
2623 gezelter 1278 begin InversionTypes
2624 cli2 1289 C CT N O AmberImproper 10.500000
2625     C CM NA O AmberImproper 10.500000
2626     C CB NA O AmberImproper 10.500000
2627     C N* NA O AmberImproper 10.500000
2628     C CT O2 O2 AmberImproper 10.500000
2629     CA CA CA CT AmberImproper 1.100000
2630     CA CA CA OH AmberImproper 1.100000
2631     CA CA CA HA AmberImproper 1.100000
2632     CA CN CA HA AmberImproper 1.100000
2633     CA NC CM N2 AmberImproper 1.100000
2634     CA CA CB HA AmberImproper 1.100000
2635     CA CB NC N2 AmberImproper 1.100000
2636     CA NA NC N2 AmberImproper 1.100000
2637     CA N2 N2 N2 AmberImproper 10.500000
2638     CM CM CA HA AmberImproper 1.100000
2639     CM C CM CT AmberImproper 1.100000
2640     CM C CM HA AmberImproper 1.100000
2641     CM N* CM H4 AmberImproper 1.100000
2642     CC NA CV CT AmberImproper 1.100000
2643     CC NA CW CT AmberImproper 1.100000
2644     CC NB CW CT AmberImproper 1.100000
2645     CV CC NB H4 AmberImproper 1.100000
2646     CW CC NA H4 AmberImproper 1.100000
2647     CW C* NA H4 AmberImproper 1.100000
2648     CR NA NA H5 AmberImproper 1.100000
2649     CR NB NA H5 AmberImproper 1.100000
2650     CR NA NB H5 AmberImproper 1.100000
2651     C* CW CB CT AmberImproper 1.100000
2652     CK NB N* H5 AmberImproper 1.100000
2653     CQ NC NC H5 AmberImproper 1.100000
2654     N C CT CT AmberImproper 1.000000
2655     N C CT H AmberImproper 1.000000
2656     N C H H AmberImproper 1.000000
2657     NA C C H AmberImproper 1.000000
2658     NA C CA H AmberImproper 1.000000
2659     NA CR CW H AmberImproper 1.000000
2660     NA CC CR H AmberImproper 1.000000
2661     NA CW CN H AmberImproper 1.000000
2662     N* CM C CT AmberImproper 1.000000
2663     N* CK CB CT AmberImproper 1.000000
2664     N2 CT CA H AmberImproper 1.000000
2665     N2 CA H H AmberImproper 1.000000
2666 gezelter 1414 C CT OH O2 AmberImproper 10.5
2667 gezelter 1278 end InversionTypes
2668 gezelter 1270