Fixed bug with rigidbodies not updating velocities for heat flux calculation.
Debugging heat flux calculation for rigid bodies.
More bug fixes....
Adding support for atomic heat flux. Is broken w/ group based cuttoffs. Units need to be corrected and their may be a sign error in Jv.
Adding experimental branch for calculation of the heatflux based on old version of OpenMD. This will need to be ported to the development branch later.
Fixed a clang compilation problem, added the ability to output particle potential in the dump files.
removing cruft (atom numbers, do_pot, do_stress) from many modules and force managers
mostly whitespace issues
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
fixed thermo bug
Changes required for Inversions and Base Atom types. This will break OOPSE badly for a few days or so...
Checking in changes for Hefland moment calculations
fixed printing of memory available
Massive update to do virials (both atomic and cutoff-group) correctly. The rigid body constraint contributions had been missing and this was masked by the use of cutoff groups...
Added simulation box dipole moment accumulation for the purposes of calculating dielectric constants
Adding single precision capabilities to c++ side
Got rid of spurious printing out of junk
End of the Link --> List Return of the Oject-Oriented replace yacc/lex parser with antlr parser
OptionSectionParser get compiled
Still had some globals toUpper problems - these changes should fix those...
fix an index mismathcing between c and fortran
Customized StatWriter is working
rewrite Globals
Fix to forceManager to pass potential array to fortran.
fixed an annoying mass ratio bug that results in simulation failure with massless particles
xemacs has been drafted to perform our indentation services
merging new_design branch into OOPSE-2.0
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