fixing the build system
Creating busticated version of OpenMD
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
replace misuse of using namespace std in header files
these core classes get compiled
more work on Molecule class
rewrite Molecule class.
More painful reconstruction is coming !!!
More work on StuntDouble, Atom, DirectionalAtom and RigidBody
DataStorage passes unit test
Snaphot and SnapshotTestCase in progress
add getArray function to RectMatrix and Vector classes
Refactoring in progress
more work in Snapshot
adding test case for Snapshot and snapshotManager.