1 |
gezelter |
246 |
/* |
2 |
|
|
* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
3 |
|
|
* |
4 |
|
|
* The University of Notre Dame grants you ("Licensee") a |
5 |
|
|
* non-exclusive, royalty free, license to use, modify and |
6 |
|
|
* redistribute this software in source and binary code form, provided |
7 |
|
|
* that the following conditions are met: |
8 |
|
|
* |
9 |
|
|
* 1. Acknowledgement of the program authors must be made in any |
10 |
|
|
* publication of scientific results based in part on use of the |
11 |
|
|
* program. An acceptable form of acknowledgement is citation of |
12 |
|
|
* the article in which the program was described (Matthew |
13 |
|
|
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
14 |
|
|
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
15 |
|
|
* Parallel Simulation Engine for Molecular Dynamics," |
16 |
|
|
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
17 |
|
|
* |
18 |
|
|
* 2. Redistributions of source code must retain the above copyright |
19 |
|
|
* notice, this list of conditions and the following disclaimer. |
20 |
|
|
* |
21 |
|
|
* 3. Redistributions in binary form must reproduce the above copyright |
22 |
|
|
* notice, this list of conditions and the following disclaimer in the |
23 |
|
|
* documentation and/or other materials provided with the |
24 |
|
|
* distribution. |
25 |
|
|
* |
26 |
|
|
* This software is provided "AS IS," without a warranty of any |
27 |
|
|
* kind. All express or implied conditions, representations and |
28 |
|
|
* warranties, including any implied warranty of merchantability, |
29 |
|
|
* fitness for a particular purpose or non-infringement, are hereby |
30 |
|
|
* excluded. The University of Notre Dame and its licensors shall not |
31 |
|
|
* be liable for any damages suffered by licensee as a result of |
32 |
|
|
* using, modifying or distributing the software or its |
33 |
|
|
* derivatives. In no event will the University of Notre Dame or its |
34 |
|
|
* licensors be liable for any lost revenue, profit or data, or for |
35 |
|
|
* direct, indirect, special, consequential, incidental or punitive |
36 |
|
|
* damages, however caused and regardless of the theory of liability, |
37 |
|
|
* arising out of the use of or inability to use software, even if the |
38 |
|
|
* University of Notre Dame has been advised of the possibility of |
39 |
|
|
* such damages. |
40 |
|
|
*/ |
41 |
|
|
|
42 |
|
|
#ifndef VISITORS_ZCONSVISITOR_HPP |
43 |
|
|
#define VISITORS_ZCONSVISITOR_HPP |
44 |
gezelter |
2 |
|
45 |
gezelter |
246 |
#include "io/ZConsReader.hpp" |
46 |
|
|
#include "primitives/RigidBody.hpp" |
47 |
tim |
3 |
#include "visitors/BaseVisitor.hpp" |
48 |
tim |
132 |
#include "visitors/AtomData.hpp" |
49 |
gezelter |
246 |
|
50 |
|
|
|
51 |
|
|
|
52 |
tim |
132 |
namespace oopse { |
53 |
gezelter |
246 |
|
54 |
|
|
/** |
55 |
|
|
* @class ZConsVisitor |
56 |
|
|
* @note |
57 |
|
|
*/ |
58 |
gezelter |
2 |
class ZConsVisitor : public BaseVisitor{ |
59 |
gezelter |
246 |
public: |
60 |
|
|
enum ZConsState{zsFixed = 0, zsMoving}; |
61 |
gezelter |
2 |
|
62 |
gezelter |
246 |
ZConsVisitor(SimInfo* info); |
63 |
|
|
~ZConsVisitor(); |
64 |
gezelter |
2 |
|
65 |
gezelter |
246 |
virtual void visit(Atom* atom); |
66 |
|
|
virtual void visit(DirectionalAtom* datom); |
67 |
|
|
virtual void visit(RigidBody* rb); |
68 |
|
|
|
69 |
|
|
virtual void update(); |
70 |
|
|
|
71 |
|
|
bool haveZconsMol() {return !zmolStates_.empty(); } |
72 |
|
|
|
73 |
|
|
virtual const std::string toString(); |
74 |
|
|
protected: |
75 |
|
|
void internalVisit(StuntDouble* sd, const std::string& prefix); |
76 |
|
|
bool isZconstraint(int index, std::string& prefix); |
77 |
|
|
void readZconsFile(double time); |
78 |
|
|
|
79 |
|
|
private: |
80 |
|
|
std::vector<double> zconsPos; |
81 |
|
|
std::map<int, ZConsState> zmolStates_; |
82 |
|
|
double zconsTol_; |
83 |
|
|
double zconsTime_; |
84 |
|
|
std::string zconsFilename_; |
85 |
|
|
ZConsReader* zconsReader_; |
86 |
|
|
SimInfo* info_; |
87 |
|
|
Snapshot* currSnapshot_; |
88 |
|
|
std::map<int, int> zatomToZmol_; |
89 |
gezelter |
2 |
}; |
90 |
tim |
132 |
|
91 |
|
|
}//namespace oopse |
92 |
gezelter |
2 |
#endif // _ZCONS_VISITOR_H_ |
93 |
|
|
|
94 |
tim |
132 |
|