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root/OpenMD/branches/development/src/utils/GenericData.hpp

Comparing:
trunk/src/utils/GenericData.hpp (file contents), Revision 246 by gezelter, Wed Jan 12 22:41:40 2005 UTC vs.
branches/development/src/utils/GenericData.hpp (file contents), Revision 1665 by gezelter, Tue Nov 22 20:38:56 2011 UTC

#	Line 1 | Line 1
1	<	/*
1	>	/*
2		* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3		*
4		* The University of Notre Dame grants you ("Licensee") a
#	Line 6 | Line 6
6		* redistribute this software in source and binary code form, provided
7		* that the following conditions are met:
8		*
9	<	* 1. Acknowledgement of the program authors must be made in any
10	<	*    publication of scientific results based in part on use of the
11	<	*    program.  An acceptable form of acknowledgement is citation of
12	<	*    the article in which the program was described (Matthew
13	<	*    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14	<	*    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15	<	*    Parallel Simulation Engine for Molecular Dynamics,"
16	<	*    J. Comput. Chem. 26, pp. 252-271 (2005))
17	<	*
18	<	* 2. Redistributions of source code must retain the above copyright
9	>	* 1. Redistributions of source code must retain the above copyright
10		*    notice, this list of conditions and the following disclaimer.
11		*
12	<	* 3. Redistributions in binary form must reproduce the above copyright
12	>	* 2. Redistributions in binary form must reproduce the above copyright
13		*    notice, this list of conditions and the following disclaimer in the
14		*    documentation and/or other materials provided with the
15		*    distribution.
#	Line 37 | Line 28
28		* arising out of the use of or inability to use software, even if the
29		* University of Notre Dame has been advised of the possibility of
30		* such damages.
31	+	*
32	+	* SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33	+	* research, please cite the appropriate papers when you publish your
34	+	* work.  Good starting points are:
35	+	*
36	+	* [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37	+	* [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38	+	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39	+	* [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40	+	* [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41		*/
42
43		/**
#	Line 54 | Line 55
55		#include <list>
56		#include <string>
57		#include <vector>
58	<	namespace oopse{
58	>	#include "config.h"
59	>	namespace OpenMD{
60
61	<	/**
62	<	* @ class GenericData GenericData.hpp "utils/GenericData.hpp"
63	<	* @brief Base class for generic data which is associated with an id
64	<	*/
65	<	class GenericData{
66	<	public:
67	<	GenericData() :  id_("UndefinedGenericData"){}
61	>	/**
62	>	* @ class GenericData GenericData.hpp "utils/GenericData.hpp"
63	>	* @brief Base class for generic data which is associated with an id
64	>	*/
65	>	class GenericData{
66	>	public:
67	>	GenericData() :  id_("UndefinedGenericData"){}
68
69	<	GenericData(const std::string& id) {  setID(id);  }
69	>	GenericData(const std::string& id) {  setID(id);  }
70
71	<	/** virtual destructor */
72	<	virtual ~GenericData() {}
71	>	/** virtual destructor */
72	>	virtual ~GenericData() {}
73
74
75	<	/**
76	<	*  Returns the id of this generic data
77	<	*
78	<	* @return the id of this generic data
79	<	*
80	<	* @see #setID
81	<	*/
82	<	const std::string getID() const { return id_;  }
75	>	/**
76	>	*  Returns the id of this generic data
77	>	*
78	>	* @return the id of this generic data
79	>	*
80	>	* @see #setID
81	>	*/
82	>	const std::string getID() const { return id_;  }
83
84	<	/**
85	<	*  Sets the id of this generic data
86	<	*
87	<	* @param id the id to be set
88	<	*
89	<	* @see #getID
90	<	*/
91	<	void setID(const std::string& id) { id_ = id;  }
84	>	/**
85	>	*  Sets the id of this generic data
86	>	*
87	>	* @param id the id to be set
88	>	*
89	>	* @see #getID
90	>	*/
91	>	void setID(const std::string& id) { id_ = id;  }
92
93
94	<	private:
95	<	GenericData(const GenericData&);
96	<	GenericData& operator=(GenericData&);
97	<	std::string id_;
94	>	private:
95	>	GenericData(const GenericData&);
96	>	GenericData& operator=(GenericData&);
97	>	std::string id_;
98
99	<	};
99	>	};
100
101	<	/**
102	<	* @class SimpleTypeData
103	<	* @brief SimpleTypeData class is a POD  repository class
104	<	* @warning ElemDataType must be copy constructible, and copy assignable
105	<	*/
106	<	template<typename ElemDataType> class SimpleTypeData : public GenericData{
101	>	/**
102	>	* @class SimpleTypeData
103	>	* @brief SimpleTypeData class is a POD  repository class
104	>	* @warning ElemDataType must be copy constructible, and copy assignable
105	>	*/
106	>	template<typename ElemDataType> class SimpleTypeData : public GenericData{
107
108	<	public:
109	<	SimpleTypeData() :  GenericData(), data_(ElemDataType()) {}
110	<	SimpleTypeData(const std::string& id) : GenericData(id), data_(ElemDataType()) {}
111	<	SimpleTypeData(const std::string&id , const ElemDataType& data) : GenericData(id), data_(data) {}
112	<	template<typename T>
113	<	SimpleTypeData(const SimpleTypeData<T>& s) {
114	<	data_ = s.getData();
115	<	}
108	>	public:
109	>	SimpleTypeData() :  GenericData(), data_(ElemDataType()) {}
110	>	SimpleTypeData(const std::string& id) : GenericData(id), data_(ElemDataType()) {}
111	>	SimpleTypeData(const std::string&id , const ElemDataType& data) : GenericData(id), data_(data) {}
112	>	template<typename T>
113	>	SimpleTypeData(const SimpleTypeData<T>& s) {
114	>	data_ = s.getData();
115	>	}
116
117	<	SimpleTypeData<ElemDataType>& operator =(const SimpleTypeData<ElemDataType>& s) {
118	<	if (this == &s)
119	<	return *this;
117	>	SimpleTypeData<ElemDataType>& operator =(const SimpleTypeData<ElemDataType>& s) {
118	>	if (this == &s)
119	>	return *this;
120
121	<	data_ = s.getData();
122	<	return *this;
123	<	}
121	>	data_ = s.getData();
122	>	return *this;
123	>	}
124
125	<	template<typename T>
126	<	SimpleTypeData<ElemDataType>& operator =(const SimpleTypeData<T>& s) {
127	<	data_ = s.getData();
128	<	return *this;
129	<	}
125	>	template<typename T>
126	>	SimpleTypeData<ElemDataType>& operator =(const SimpleTypeData<T>& s) {
127	>	data_ = s.getData();
128	>	return *this;
129	>	}
130
131	<	/** Returns POD data */
132	<	const ElemDataType& getData() const {return data_;}
133	<	ElemDataType& getData()  {return data_;}
134	<	/**
135	<	* Sets POD data
136	<	* @data POD data to be set
137	<	*/
138	<	void setData(const ElemDataType& data) { data_ = data;  }
131	>	/** Returns POD data */
132	>	const ElemDataType& getData() const {return data_;}
133	>	ElemDataType& getData()  {return data_;}
134	>	/**
135	>	* Sets POD data
136	>	* @data POD data to be set
137	>	*/
138	>	void setData(const ElemDataType& data) { data_ = data;  }
139
140	<	private:
141	<	ElemDataType data_;
142	<	};
140	>	private:
141	>	ElemDataType data_;
142	>	};
143
144	<	/** BoolGenericData is a generic data type contains a bool variable */
145	<	typedef SimpleTypeData<bool> BoolGenericData;
144	>	/** BoolGenericData is a generic data type contains a bool variable */
145	>	typedef SimpleTypeData<bool> BoolGenericData;
146
147	<	/** IntGenericData is a generic data type contains an integer variable */
148	<	typedef SimpleTypeData<int> IntGenericData;
147	>	/** IntGenericData is a generic data type contains an integer variable */
148	>	typedef SimpleTypeData<int> IntGenericData;
149
150	<	/** FloatGenericData is a generic data type contains a float variable */
151	<	typedef SimpleTypeData<float> FloatGenericData;
150	>	/** FloatGenericData is a generic data type contains a float variable */
151	>	typedef SimpleTypeData<float> FloatGenericData;
152
153	<	/** DoubleGenericData is a generic data type contains a double variable */
154	<	typedef SimpleTypeData<double> DoubleGenericData;
153	>	/** DoubleGenericData is a generic data type contains a RealType variable */
154	>	typedef SimpleTypeData<RealType> DoubleGenericData;
155
156	<	/**
157	<	* @typedef StringGenericData
158	<	* A generic data type contains a  std::string variable
159	<	*
160	<	* @code
161	<	*   StringGenericData* s = new StringGenericData("MyStringGenericData");
162	<	*   PropertyMap propMap;
163	<	*   GenericData* gdata;
164	<	*
165	<	*   s->setData("OOPSE");
166	<	*   propMap->addProperty(s);
167	<	*
168	<	*   gdata = propMap->getPropertyByName("MyStringGenericData");
169	<	*   if (gdata != NULL){
170	<	*     s = dynamic_cast<StringGenericData*>(gdata);
171	<	*     if (s != NULL)
172	<	*       std::cout << s->getData() << std::endl;
173	<	*   }
174	<	*
175	<	* @endcode
176	<	*/
177	<	typedef SimpleTypeData<std::string> StringGenericData;
156	>	/**
157	>	* @typedef StringGenericData
158	>	* A generic data type contains a  std::string variable
159	>	*
160	>	* @code
161	>	*   StringGenericData* s = new StringGenericData("MyStringGenericData");
162	>	*   PropertyMap propMap;
163	>	*   GenericData* gdata;
164	>	*
165	>	*   s->setData("OpenMD");
166	>	*   propMap->addProperty(s);
167	>	*
168	>	*   gdata = propMap->getPropertyByName("MyStringGenericData");
169	>	*   if (gdata != NULL){
170	>	*     s = dynamic_cast<StringGenericData*>(gdata);
171	>	*     if (s != NULL)
172	>	*       std::cout << s->getData() << std::endl;
173	>	*   }
174	>	*
175	>	* @endcode
176	>	*/
177	>	typedef SimpleTypeData<std::string> StringGenericData;
178
179	<	/**
180	<	* @class STLContainerTypeData
181	<	* @brief STL container type generic data which is associated with an id
182	<	*
183	<	* @template ContainerType
184	<	* @template ElemDataType
185	<	*/
186	<	template <template<typename ELEM, typename = std::allocator<ELEM> > class ContainerType,
187	<	typename ElemDataType >
188	<	class STLContainerTypeData : public GenericData, public ContainerType<ElemDataType>{
189	<	public:
188	<	typedef STLContainerTypeData<ContainerType, ElemDataType> SelfType;
189	<	typedef ContainerType<ElemDataType> STLContainerType;
179	>	/**
180	>	* @class STLContainerTypeData
181	>	* @brief STL container type generic data which is associated with an id
182	>	*
183	>	* @template ContainerType
184	>	* @template ElemDataType
185	>	*/
186	>	template <typename ElemDataType >
187	>	class VectorTypeData : public GenericData {
188	>	public:
189	>	typedef VectorTypeData<ElemDataType> SelfType;
190
191	<	STLContainerTypeData(const std::string& id)
192	<	: GenericData(id),  ContainerType<ElemDataType> () {}
191	>	VectorTypeData(const std::string& id)
192	>	: GenericData(id){}
193
194	<	STLContainerTypeData(const SelfType& s) : SelfType(s){}
194	>	VectorTypeData(const SelfType& s) : data_(s){}
195
196	<	SelfType& operator =(const SelfType& s){
197	<	if (this == &s)
198	<	return *this;
196	>	SelfType& operator =(const SelfType& s){
197	>	if (this == &s)
198	>	return *this;
199
200	<	STLContainerType::operator=(s);
201	<	return *this;
202	<	}
203	<	};
200	>	this->data_ = s.data_;
201	>	return *this;
202	>	}
203	>
204	>	private:
205	>	std::vector<ElemDataType> data_;
206	>	};
207
208	<	/**
209	<	* @typedef IntVectorGenericData
210	<	* A generic data type contains a  std::vector<int> variable.
211	<	*/
212	<	typedef STLContainerTypeData<std::vector, int> IntVectorGenericData;
208	>	/**
209	>	* @typedef IntVectorGenericData
210	>	* A generic data type contains a  std::vector<int> variable.
211	>	*/
212	>	typedef VectorTypeData<int> IntVectorGenericData;
213
214	<	/**
215	<	* @typedef IntVectorGenericData
216	<	* A generic data type contains a  std::vector<float> variable.
217	<	*/
218	<	typedef STLContainerTypeData<std::vector, float> FloatVectorGenericData;
214	>	/**
215	>	* @typedef IntVectorGenericData
216	>	* A generic data type contains a  std::vector<float> variable.
217	>	*/
218	>	typedef VectorTypeData<float> FloatVectorGenericData;
219
220	<	/**
221	<	* @typedef IntVectorGenericData
222	<	* A generic data type contains a  std::vector<double> variable.
223	<	*/
224	<	typedef STLContainerTypeData<std::vector, double> DoubleVectorGenericData;
220	>	/**
221	>	* @typedef IntVectorGenericData
222	>	* A generic data type contains a  std::vector<RealType> variable.
223	>	*/
224	>	typedef VectorTypeData<RealType> DoubleVectorGenericData;
225
226	<	/**
227	<	* @typedef StringVectorGenericData
228	<	*  A generic data type contains a  std::vector<string> variable.
229	<	*
230	<	* @code
231	<	*  StringVectorGenericData* sv = new StringVectorGenericData("MyStringVector");
232	<	*  GenericData* gdata;
233	<	*  PropertyMap propMap;
234	<	*  std::vector<std::string>::iterator iter;
235	<	*
236	<	*  sv->push_back("Hello World");
237	<	*  sv->push_back("OOPSE");
238	<	*
239	<	*  propMap.addProperty(sv);
240	<	*
241	<	*  gdata = propMap.getPropertyByName("MyStringVector");
242	<	*
243	<	*  if (gdata != NULL){
244	<	*
245	<	*    sv = dynamic_cast<StringVectorGenericData*>(gdata);
246	<	*
247	<	*    if (sv != NULL){
248	<	*      for (iter = sv->begin(); iter != sv->end(); ++ iter)
249	<	*        std::cout << *iter << std::endl;
250	<	*    }
251	<	*  }
252	<	* @endcode
253	<	*/
254	<	typedef STLContainerTypeData<std::vector, std::string> StringVectorGenericData;
252	<
253	<	/**
254	<	* @typedef IntVectorGenericData
255	<	* A generic data type contains a   std::list<vector<string> >  variable.
256	<	*/
257	<	typedef STLContainerTypeData<std::list, std::vector<int> > IntVectorListGenericData;
226	>	/**
227	>	* @typedef StringVectorGenericData
228	>	*  A generic data type contains a  std::vector<string> variable.
229	>	*
230	>	* @code
231	>	*  StringVectorGenericData* sv = new StringVectorGenericData("MyStringVector");
232	>	*  GenericData* gdata;
233	>	*  PropertyMap propMap;
234	>	*  std::vector<std::string>::iterator iter;
235	>	*
236	>	*  sv->push_back("Hello World");
237	>	*  sv->push_back("OpenMD");
238	>	*
239	>	*  propMap.addProperty(sv);
240	>	*
241	>	*  gdata = propMap.getPropertyByName("MyStringVector");
242	>	*
243	>	*  if (gdata != NULL){
244	>	*
245	>	*    sv = dynamic_cast<StringVectorGenericData*>(gdata);
246	>	*
247	>	*    if (sv != NULL){
248	>	*      for (iter = sv->begin(); iter != sv->end(); ++ iter)
249	>	*        std::cout << *iter << std::endl;
250	>	*    }
251	>	*  }
252	>	* @endcode
253	>	*/
254	>	typedef VectorTypeData<std::string> StringVectorGenericData;
255
259	–	#define CHIVALUE_ID "CHIVALUE"
260	–	#define INTEGRALOFCHIDT_ID "INTEGRALOFCHIDT"
261	–	#define ETAVALUE_ID "ETAVALUE"
256
257	<	} // namespace oopse
257	>	} // namespace OpenMD
258		#endif //UTIL _GENERICDATA_HPP

Comparing:
trunk/src/utils/GenericData.hpp (property svn:keywords), Revision 246 by gezelter, Wed Jan 12 22:41:40 2005 UTC vs.
branches/development/src/utils/GenericData.hpp (property svn:keywords), Revision 1665 by gezelter, Tue Nov 22 20:38:56 2011 UTC

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