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root/OpenMD/branches/development/src/selection/SelectionManager.hpp

Comparing:
trunk/src/selection/SelectionManager.hpp (file contents), Revision 277 by tim, Tue Feb 1 06:55:00 2005 UTC vs.
branches/development/src/selection/SelectionManager.hpp (file contents), Revision 1803 by gezelter, Wed Oct 3 14:20:07 2012 UTC

#	Line 6 | Line 6
6		* redistribute this software in source and binary code form, provided
7		* that the following conditions are met:
8		*
9	<	* 1. Acknowledgement of the program authors must be made in any
10	<	*    publication of scientific results based in part on use of the
11	<	*    program.  An acceptable form of acknowledgement is citation of
12	<	*    the article in which the program was described (Matthew
13	<	*    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14	<	*    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15	<	*    Parallel Simulation Engine for Molecular Dynamics,"
16	<	*    J. Comput. Chem. 26, pp. 252-271 (2005))
17	<	*
18	<	* 2. Redistributions of source code must retain the above copyright
9	>	* 1. Redistributions of source code must retain the above copyright
10		*    notice, this list of conditions and the following disclaimer.
11		*
12	<	* 3. Redistributions in binary form must reproduce the above copyright
12	>	* 2. Redistributions in binary form must reproduce the above copyright
13		*    notice, this list of conditions and the following disclaimer in the
14		*    documentation and/or other materials provided with the
15		*    distribution.
#	Line 37 | Line 28
28		* arising out of the use of or inability to use software, even if the
29		* University of Notre Dame has been advised of the possibility of
30		* such damages.
31	+	*
32	+	* SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33	+	* research, please cite the appropriate papers when you publish your
34	+	* work.  Good starting points are:
35	+	*
36	+	* [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37	+	* [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38	+	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39	+	* [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40	+	* [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41		*/
42
43		#ifndef SELECTION_SELECTIONMANAGER_HPP
44		#define SELECTION_SELECTIONMANAGER_HPP
45
46	<	namespace oopse {
46	>	#include "utils/OpenMDBitSet.hpp"
47	>	#include "primitives/StuntDouble.hpp"
48	>	namespace OpenMD {
49
50	<	/**
51	<	* @class SelectionManager SelectionManager.hpp "selection/SelectionManager.hpp"
52	<	* @brief
53	<	*/
51	<	class SelectionManager {
50	>	class SimInfo;
51	>	class SelectionManager {
52	>	public:
53	>	SelectionManager(SimInfo* info);
54
55	<	};
55	>	void addSelection(StuntDouble* sd) {
56	>	bsSelection_.setBitOn(sd->getGlobalIndex());
57	>	}
58	>
59	>	void addSelectionSet(const OpenMDBitSet& bs) {
60	>	bsSelection_ |= bs;
61	>	}
62
63	+	void setSelection(StuntDouble* sd) {
64	+	bsSelection_.clearAll();
65	+	bsSelection_.setBitOn(sd->getGlobalIndex());
66	+	}
67	+
68	+	void setSelectionSet(const OpenMDBitSet& bs) {
69	+	bsSelection_ = bs;
70	+	}
71	+
72	+	void toggleSelection(StuntDouble* sd) {
73	+	bsSelection_.flip(sd->getGlobalIndex());
74	+	}
75	+
76	+	void toggleSelection() {
77	+	bsSelection_.flip();
78	+	}
79	+
80	+	void selectAll() {
81	+	bsSelection_.setAll();
82	+	}
83	+
84	+	void clearSelection() {
85	+	bsSelection_.clearAll();
86	+	}
87	+
88	+	void clearSelection(StuntDouble* sd) {
89	+	bsSelection_.setBitOff(sd->getGlobalIndex());
90	+	}
91	+
92	+	bool isSelected(StuntDouble* sd) {
93	+	return bsSelection_[sd->getGlobalIndex()];
94	+	}
95	+
96	+	bool isEmpty() {
97	+	return bsSelection_.none();
98	+	}
99	+
100	+	int getSelectionCount() {
101	+	return bsSelection_.countBits();
102	+	}
103	+
104	+	OpenMDBitSet getSelectionSet() {
105	+	return bsSelection_;
106	+	}
107	+
108	+
109	+	StuntDouble* beginSelected(int& i);
110	+	StuntDouble* nextSelected(int& i);
111	+
112	+	StuntDouble* beginUnselected(int& i);
113	+	StuntDouble* nextUnSelected(int& i);
114	+
115	+	SelectionManager& operator&= (const SelectionManager &sman) {
116	+	bsSelection_ &= sman.bsSelection_;
117	+	return *this;
118	+	}
119	+
120	+	SelectionManager& operator|= (const SelectionManager &sman) {
121	+	bsSelection_ |= sman.bsSelection_;
122	+	return *this;
123	+	}
124	+
125	+	SelectionManager& operator^= (const SelectionManager &sman) {
126	+	bsSelection_ ^= sman.bsSelection_;
127	+	return *this;
128	+	}
129	+
130	+	SelectionManager& operator-= (const SelectionManager &sman) {
131	+	bsSelection_ -= sman.bsSelection_;
132	+	return *this;
133	+	}
134	+
135	+	friend SelectionManager operator| (const SelectionManager& sman1, const SelectionManager& sman2);
136	+	friend SelectionManager operator& (const SelectionManager& sman1, const SelectionManager& sman2);
137	+	friend SelectionManager operator^ (const SelectionManager& sman1, const SelectionManager& sman2);
138	+	friend SelectionManager operator-(const SelectionManager& sman1, const SelectionManager& sman2);
139	+
140	+	private:
141	+	SimInfo* info_;
142	+	OpenMDBitSet bsSelection_;
143	+	std::vector<StuntDouble*> stuntdoubles_;
144	+	};
145	+
146		}
147		#endif

Comparing:
trunk/src/selection/SelectionManager.hpp (property svn:keywords), Revision 277 by tim, Tue Feb 1 06:55:00 2005 UTC vs.
branches/development/src/selection/SelectionManager.hpp (property svn:keywords), Revision 1803 by gezelter, Wed Oct 3 14:20:07 2012 UTC

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