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Comparing:
trunk/src/selection/SelectionManager.hpp (file contents), Revision 770 by tim, Fri Dec 2 15:38:03 2005 UTC vs.
branches/development/src/selection/SelectionManager.hpp (file contents), Revision 1803 by gezelter, Wed Oct 3 14:20:07 2012 UTC

# Line 6 | Line 6
6   * redistribute this software in source and binary code form, provided
7   * that the following conditions are met:
8   *
9 < * 1. Acknowledgement of the program authors must be made in any
10 < *    publication of scientific results based in part on use of the
11 < *    program.  An acceptable form of acknowledgement is citation of
12 < *    the article in which the program was described (Matthew
13 < *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 < *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 < *    Parallel Simulation Engine for Molecular Dynamics,"
16 < *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 < *
18 < * 2. Redistributions of source code must retain the above copyright
9 > * 1. Redistributions of source code must retain the above copyright
10   *    notice, this list of conditions and the following disclaimer.
11   *
12 < * 3. Redistributions in binary form must reproduce the above copyright
12 > * 2. Redistributions in binary form must reproduce the above copyright
13   *    notice, this list of conditions and the following disclaimer in the
14   *    documentation and/or other materials provided with the
15   *    distribution.
# Line 37 | Line 28
28   * arising out of the use of or inability to use software, even if the
29   * University of Notre Dame has been advised of the possibility of
30   * such damages.
31 + *
32 + * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33 + * research, please cite the appropriate papers when you publish your
34 + * work.  Good starting points are:
35 + *                                                                      
36 + * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).            
37 + * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
38 + * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).          
39 + * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40 + * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41   */
42  
43   #ifndef SELECTION_SELECTIONMANAGER_HPP
44   #define SELECTION_SELECTIONMANAGER_HPP
45  
46 < #include "utils/OOPSEBitSet.hpp"
46 > #include "utils/OpenMDBitSet.hpp"
47   #include "primitives/StuntDouble.hpp"
48 < namespace oopse {
48 > namespace OpenMD {
49  
50    class SimInfo;
50 –  /**
51 –   * @class SelectionManager SelectionManager.hpp "selection/SelectionManager.hpp"
52 –   * @brief
53 –   */
51    class SelectionManager {
52    public:
53      SelectionManager(SimInfo* info);
# Line 59 | Line 56 | namespace oopse {
56        bsSelection_.setBitOn(sd->getGlobalIndex());
57      }
58          
59 <    void addSelectionSet(const OOPSEBitSet& bs) {
59 >    void addSelectionSet(const OpenMDBitSet& bs) {
60        bsSelection_ |= bs;
61      }
62  
# Line 68 | Line 65 | namespace oopse {
65        bsSelection_.setBitOn(sd->getGlobalIndex());
66      }
67          
68 <    void setSelectionSet(const OOPSEBitSet& bs) {
68 >    void setSelectionSet(const OpenMDBitSet& bs) {
69        bsSelection_ = bs;          
70      }
71  
# Line 104 | Line 101 | namespace oopse {
101        return bsSelection_.countBits();
102      }
103  
104 <    OOPSEBitSet getSelectionSet() {
104 >    OpenMDBitSet getSelectionSet() {
105        return bsSelection_;
106      }
107  
# Line 142 | Line 139 | namespace oopse {
139          
140    private:
141      SimInfo* info_;
142 <    OOPSEBitSet bsSelection_;
142 >    OpenMDBitSet bsSelection_;
143      std::vector<StuntDouble*> stuntdoubles_;
144    };
145  

Comparing:
trunk/src/selection/SelectionManager.hpp (property svn:keywords), Revision 770 by tim, Fri Dec 2 15:38:03 2005 UTC vs.
branches/development/src/selection/SelectionManager.hpp (property svn:keywords), Revision 1803 by gezelter, Wed Oct 3 14:20:07 2012 UTC

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