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root/OpenMD/branches/development/src/selection/IndexFinder.cpp
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Comparing trunk/src/selection/IndexFinder.cpp (file contents):
Revision 416 by tim, Wed Mar 9 18:48:14 2005 UTC vs.
Revision 770 by tim, Fri Dec 2 15:38:03 2005 UTC

# Line 44 | Line 44 | namespace oopse {
44  
45  
46  
47 < IndexFinder::IndexFinder(SimInfo* info) : info_(info){
47 >  IndexFinder::IndexFinder(SimInfo* info) : info_(info){
48      nStuntDoubles_ = info_->getNGlobalAtoms() + info_->getNGlobalRigidBodies();
49      bitSets_.resize(info_->getNGlobalMolecules());
50      init();
51 < }
51 >  }
52  
53  
54 < void IndexFinder::init() {
54 >  void IndexFinder::init() {
55  
56      SimInfo::MoleculeIterator mi;
57      Molecule* mol;
# Line 62 | Line 62 | void IndexFinder::init() {
62      
63      for (mol = info_->beginMolecule(mi); mol != NULL; mol = info_->nextMolecule(mi)) {
64            
65 <        BitSet bs(nStuntDoubles_);
66 <        for(atom = mol->beginAtom(ai); atom != NULL; atom = mol->nextAtom(ai)) {
67 <            bs.setBitOn(atom->getGlobalIndex());
68 <        }
65 >      OOPSEBitSet bs(nStuntDoubles_);
66 >      for(atom = mol->beginAtom(ai); atom != NULL; atom = mol->nextAtom(ai)) {
67 >        bs.setBitOn(atom->getGlobalIndex());
68 >      }
69  
70 <        for (rb = mol->beginRigidBody(rbIter); rb != NULL; rb = mol->nextRigidBody(rbIter)) {
71 <            bs.setBitOn(rb->getGlobalIndex());
72 <        }
70 >      for (rb = mol->beginRigidBody(rbIter); rb != NULL; rb = mol->nextRigidBody(rbIter)) {
71 >        bs.setBitOn(rb->getGlobalIndex());
72 >      }
73  
74 <        bitSets_[mol->getGlobalIndex()] = bs;
74 >      bitSets_[mol->getGlobalIndex()] = bs;
75      }    
76  
77 < }
77 >  }
78  
79 < BitSet IndexFinder::find(int molIndex){
79 >  OOPSEBitSet IndexFinder::find(int molIndex){
80      return bitSets_[molIndex];
81 < }
81 >  }
82  
83 < BitSet IndexFinder::find(int begMolIndex, int endMolIndex){
84 <    BitSet bs(nStuntDoubles_);
83 >  OOPSEBitSet IndexFinder::find(int begMolIndex, int endMolIndex){
84 >    OOPSEBitSet bs(nStuntDoubles_);
85          
86      for (int i = begMolIndex; i < endMolIndex; ++i) {
87 <        bs |= bitSets_[i];
87 >      bs |= bitSets_[i];
88      }
89      
90      return bs;
91 < }
91 >  }
92  
93  
94   }

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