6 |
|
* redistribute this software in source and binary code form, provided |
7 |
|
* that the following conditions are met: |
8 |
|
* |
9 |
< |
* 1. Acknowledgement of the program authors must be made in any |
10 |
< |
* publication of scientific results based in part on use of the |
11 |
< |
* program. An acceptable form of acknowledgement is citation of |
12 |
< |
* the article in which the program was described (Matthew |
13 |
< |
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
14 |
< |
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
15 |
< |
* Parallel Simulation Engine for Molecular Dynamics," |
16 |
< |
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
17 |
< |
* |
18 |
< |
* 2. Redistributions of source code must retain the above copyright |
9 |
> |
* 1. Redistributions of source code must retain the above copyright |
10 |
|
* notice, this list of conditions and the following disclaimer. |
11 |
|
* |
12 |
< |
* 3. Redistributions in binary form must reproduce the above copyright |
12 |
> |
* 2. Redistributions in binary form must reproduce the above copyright |
13 |
|
* notice, this list of conditions and the following disclaimer in the |
14 |
|
* documentation and/or other materials provided with the |
15 |
|
* distribution. |
28 |
|
* arising out of the use of or inability to use software, even if the |
29 |
|
* University of Notre Dame has been advised of the possibility of |
30 |
|
* such damages. |
31 |
+ |
* |
32 |
+ |
* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
33 |
+ |
* research, please cite the appropriate papers when you publish your |
34 |
+ |
* work. Good starting points are: |
35 |
+ |
* |
36 |
+ |
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
37 |
+ |
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
38 |
+ |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
39 |
+ |
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
40 |
+ |
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
41 |
|
*/ |
42 |
|
|
43 |
|
/** |
59 |
|
#include "utils/PropertyMap.hpp" |
60 |
|
#include "brains/Snapshot.hpp" |
61 |
|
#include "brains/SnapshotManager.hpp" |
62 |
< |
namespace oopse{ |
62 |
> |
namespace OpenMD{ |
63 |
|
|
64 |
|
|
65 |
|
|
107 |
|
|
108 |
|
/** |
109 |
|
* Sets the global index of this stuntDouble. |
110 |
< |
* @param new global index to be set |
110 |
> |
* @param index new global index to be set |
111 |
|
*/ |
112 |
|
void setGlobalIndex(int index) { |
113 |
|
globalIndex_ = index; |
568 |
|
void setEuler(const Vector3d& euler, int snapshotNo) { |
569 |
|
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).aMat[localIndex_] = euler; |
570 |
|
} |
571 |
< |
|
571 |
> |
|
572 |
|
/** |
573 |
< |
* Returns the previous unit vectors of this stuntDouble |
574 |
< |
* @return the unit vectors of this stuntDouble |
573 |
> |
* Returns the previous dipole vector of this stuntDouble |
574 |
> |
* @return the dipole vector of this stuntDouble |
575 |
|
*/ |
576 |
< |
RotMat3x3d getPrevElectroFrame() { |
577 |
< |
return ((snapshotMan_->getPrevSnapshot())->*storage_).electroFrame[localIndex_]; |
576 |
> |
Vector3d getPrevDipole() { |
577 |
> |
return ((snapshotMan_->getPrevSnapshot())->*storage_).dipole[localIndex_]; |
578 |
|
} |
579 |
< |
|
579 |
> |
|
580 |
|
/** |
581 |
< |
* Returns the current unit vectors of this stuntDouble |
582 |
< |
* @return the unit vectors of this stuntDouble |
583 |
< |
*/ |
584 |
< |
RotMat3x3d getElectroFrame() { |
585 |
< |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).electroFrame[localIndex_]; |
581 |
> |
* Returns the current dipole vector of this stuntDouble |
582 |
> |
* @return the dipole vector of this stuntDouble |
583 |
> |
*/ |
584 |
> |
Vector3d getDipole() { |
585 |
> |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).dipole[localIndex_]; |
586 |
|
} |
587 |
< |
|
587 |
> |
|
588 |
|
/** |
589 |
< |
* Returns the unit vectors of this stuntDouble in specified snapshot |
589 |
> |
* Returns the dipole vector of this stuntDouble in specified snapshot |
590 |
|
* |
591 |
< |
* @return the unit vectors of this stuntDouble |
591 |
> |
* @return the dipole vector of this stuntDouble |
592 |
|
* @param snapshotNo |
593 |
|
*/ |
594 |
< |
RotMat3x3d getElectroFrame(int snapshotNo) { |
595 |
< |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).electroFrame[localIndex_]; |
594 |
> |
Vector3d getDipole(int snapshotNo) { |
595 |
> |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).dipole[localIndex_]; |
596 |
|
} |
597 |
|
|
598 |
+ |
|
599 |
+ |
/** |
600 |
+ |
* Returns the previous quadrupole tensor of this stuntDouble |
601 |
+ |
* @return the quadrupole tensor of this stuntDouble |
602 |
+ |
*/ |
603 |
+ |
Mat3x3d getPrevQuadrupole() { |
604 |
+ |
return ((snapshotMan_->getPrevSnapshot())->*storage_).quadrupole[localIndex_]; |
605 |
+ |
} |
606 |
+ |
|
607 |
+ |
/** |
608 |
+ |
* Returns the current quadrupole tensor of this stuntDouble |
609 |
+ |
* @return the quadrupole tensor of this stuntDouble |
610 |
+ |
*/ |
611 |
+ |
Mat3x3d getQuadrupole() { |
612 |
+ |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).quadrupole[localIndex_]; |
613 |
+ |
} |
614 |
+ |
|
615 |
+ |
/** |
616 |
+ |
* Returns the quadrupole tensor of this stuntDouble in specified snapshot |
617 |
+ |
* |
618 |
+ |
* @return the quadrupole tensor of this stuntDouble |
619 |
+ |
* @param snapshotNo |
620 |
+ |
*/ |
621 |
+ |
Mat3x3d getQuadrupole(int snapshotNo) { |
622 |
+ |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).quadrupole[localIndex_]; |
623 |
+ |
} |
624 |
+ |
|
625 |
|
/** |
626 |
|
* Returns the previous force of this stuntDouble |
627 |
|
* @return the force of this stuntDouble |
791 |
|
} |
792 |
|
|
793 |
|
|
794 |
+ |
|
795 |
|
/** |
796 |
< |
* Returns the previous z-angle of this stuntDouble |
797 |
< |
* @return the z-angle of this stuntDouble |
796 |
> |
* Returns the previous particlePot of this stuntDouble |
797 |
> |
* @return the particlePot of this stuntDouble |
798 |
|
*/ |
799 |
< |
RealType getPrevZangle() { |
800 |
< |
return ((snapshotMan_->getPrevSnapshot())->*storage_).zAngle[localIndex_]; |
799 |
> |
RealType getPrevParticlePot() { |
800 |
> |
return ((snapshotMan_->getPrevSnapshot())->*storage_).particlePot[localIndex_]; |
801 |
|
} |
802 |
|
|
803 |
|
/** |
804 |
< |
* Returns the current z-angle of this stuntDouble |
805 |
< |
* @return the z-angle of this stuntDouble |
804 |
> |
* Returns the current particlePot of this stuntDouble |
805 |
> |
* @return the particlePot of this stuntDouble |
806 |
|
*/ |
807 |
< |
RealType getZangle() { |
808 |
< |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).zAngle[localIndex_]; |
807 |
> |
RealType getParticlePot() { |
808 |
> |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).particlePot[localIndex_]; |
809 |
|
} |
810 |
|
|
811 |
|
/** |
812 |
< |
* Returns the z-angle of this stuntDouble in specified snapshot |
813 |
< |
* @return the z-angle of this stuntDouble |
812 |
> |
* Returns the particlePot of this stuntDouble in specified snapshot |
813 |
> |
* |
814 |
> |
* @return the particlePot of this stuntDouble |
815 |
|
* @param snapshotNo |
816 |
|
*/ |
817 |
< |
RealType getZangle(int snapshotNo) { |
818 |
< |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).zAngle[localIndex_]; |
817 |
> |
RealType getParticlePot(int snapshotNo) { |
818 |
> |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).particlePot[localIndex_]; |
819 |
|
} |
820 |
|
|
821 |
|
/** |
822 |
< |
* Sets the previous z-angle of this stuntDouble |
823 |
< |
* @param angle new z-angle |
824 |
< |
* @see #getZangle |
822 |
> |
* Sets the previous particlePot of this stuntDouble |
823 |
> |
* |
824 |
> |
* @param particlePot new particlePot |
825 |
> |
* @see #getParticlePot |
826 |
|
*/ |
827 |
< |
void setPrevZangle(RealType angle) { |
828 |
< |
((snapshotMan_->getPrevSnapshot())->*storage_).zAngle[localIndex_] = angle; |
827 |
> |
void setPrevParticlePot(const RealType& particlePot) { |
828 |
> |
((snapshotMan_->getPrevSnapshot())->*storage_).particlePot[localIndex_] = particlePot; |
829 |
|
} |
830 |
|
|
831 |
|
/** |
832 |
< |
* Sets the current z-angle of this stuntDouble |
833 |
< |
* @param angle new z-angle |
832 |
> |
* Sets the current particlePot of this stuntDouble |
833 |
> |
* @param particlePot new particlePot |
834 |
|
*/ |
835 |
< |
void setZangle(RealType angle) { |
836 |
< |
((snapshotMan_->getCurrentSnapshot())->*storage_).zAngle[localIndex_] = angle; |
835 |
> |
void setParticlePot(const RealType& particlePot) { |
836 |
> |
((snapshotMan_->getCurrentSnapshot())->*storage_).particlePot[localIndex_] = particlePot; |
837 |
|
} |
838 |
|
|
839 |
|
/** |
840 |
< |
* Sets the z-angle of this stuntDouble in specified snapshot |
841 |
< |
* @param angle z-angle to be set |
840 |
> |
* Sets the particlePot of this stuntDouble in specified snapshot |
841 |
> |
* |
842 |
> |
* @param particlePot particlePot to be set |
843 |
|
* @param snapshotNo |
844 |
< |
* @see #getZangle |
844 |
> |
* @see #getParticlePot |
845 |
|
*/ |
846 |
< |
void setZangle(RealType angle, int snapshotNo) { |
847 |
< |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).zAngle[localIndex_] = angle; |
846 |
> |
void setParticlePot(const RealType& particlePot, int snapshotNo) { |
847 |
> |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).particlePot[localIndex_] = particlePot; |
848 |
|
} |
849 |
|
|
850 |
|
/** |
851 |
< |
* Adds z-angle into the previous z-angle of this stuntDouble |
852 |
< |
* @param angle new z-angle |
853 |
< |
* @see #getZangle |
851 |
> |
* Adds particlePot into the previous particlePot of this stuntDouble |
852 |
> |
* |
853 |
> |
* @param particlePot new particlePot |
854 |
> |
* @see #getParticlePot |
855 |
|
*/ |
856 |
< |
void addPrevZangle(RealType angle) { |
857 |
< |
((snapshotMan_->getPrevSnapshot())->*storage_).zAngle[localIndex_] += angle; |
856 |
> |
void addPrevParticlePot(const RealType& particlePot) { |
857 |
> |
((snapshotMan_->getPrevSnapshot())->*storage_).particlePot[localIndex_] += particlePot; |
858 |
|
} |
859 |
|
|
860 |
|
/** |
861 |
< |
* Adds z-angle into the current z-angle of this stuntDouble |
862 |
< |
* @param angle new z-angle |
861 |
> |
* Adds particlePot into the current particlePot of this stuntDouble |
862 |
> |
* @param particlePot new particlePot |
863 |
|
*/ |
864 |
< |
void addZangle(RealType angle) { |
865 |
< |
((snapshotMan_->getCurrentSnapshot())->*storage_).zAngle[localIndex_] += angle; |
864 |
> |
void addParticlePot(const RealType& particlePot) { |
865 |
> |
((snapshotMan_->getCurrentSnapshot())->*storage_).particlePot[localIndex_] += particlePot; |
866 |
|
} |
867 |
|
|
868 |
|
/** |
869 |
< |
* Adds z-angle into the z-angle of this stuntDouble in specified snapshot |
870 |
< |
* @param angle z-angle to be add |
869 |
> |
* Adds particlePot into the particlePot of this stuntDouble in specified snapshot |
870 |
> |
* |
871 |
> |
* @param particlePot particlePot to be add |
872 |
|
* @param snapshotNo |
873 |
< |
* @see #getZangle |
873 |
> |
* @see #getParticlePot |
874 |
|
*/ |
875 |
< |
void addZangle(RealType angle, int snapshotNo) { |
876 |
< |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).zAngle[localIndex_] += angle; |
875 |
> |
void addParticlePot(const RealType& particlePot, int snapshotNo) { |
876 |
> |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).particlePot[localIndex_] += particlePot; |
877 |
|
} |
878 |
|
|
879 |
+ |
/** |
880 |
+ |
* Returns the previous fluctuating charge of this stuntDouble |
881 |
+ |
* @return the fluctuating charge of this stuntDouble |
882 |
+ |
*/ |
883 |
+ |
RealType getPrevFlucQPos() { |
884 |
+ |
return ((snapshotMan_->getPrevSnapshot())->*storage_).flucQPos[localIndex_]; |
885 |
+ |
} |
886 |
+ |
|
887 |
+ |
/** |
888 |
+ |
* Returns the current fluctuating charge of this stuntDouble |
889 |
+ |
* @return the fluctuating charge of this stuntDouble |
890 |
+ |
*/ |
891 |
+ |
RealType getFlucQPos() { |
892 |
+ |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).flucQPos[localIndex_]; |
893 |
+ |
} |
894 |
+ |
|
895 |
+ |
/** |
896 |
+ |
* Returns the fluctuating charge of this stuntDouble in specified snapshot |
897 |
+ |
* @return the fluctuating charge of this stuntDouble |
898 |
+ |
* @param snapshotNo |
899 |
+ |
*/ |
900 |
+ |
RealType getFlucQPos(int snapshotNo) { |
901 |
+ |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQPos[localIndex_]; |
902 |
+ |
} |
903 |
+ |
|
904 |
+ |
/** |
905 |
+ |
* Sets the previous fluctuating charge of this stuntDouble |
906 |
+ |
* @param charge new fluctuating charge |
907 |
+ |
* @see #getFlucQPos |
908 |
+ |
*/ |
909 |
+ |
void setPrevFlucQPos(RealType charge) { |
910 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).flucQPos[localIndex_] = charge; |
911 |
+ |
} |
912 |
+ |
|
913 |
+ |
/** |
914 |
+ |
* Sets the current fluctuating charge of this stuntDouble |
915 |
+ |
* @param charge new fluctuating charge |
916 |
+ |
*/ |
917 |
+ |
void setFlucQPos(RealType charge) { |
918 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).flucQPos[localIndex_] = charge; |
919 |
+ |
} |
920 |
+ |
|
921 |
+ |
/** |
922 |
+ |
* Sets the fluctuating charge of this stuntDouble in specified snapshot |
923 |
+ |
* @param charge fluctuating charge to be set |
924 |
+ |
* @param snapshotNo |
925 |
+ |
* @see #getFlucQPos |
926 |
+ |
*/ |
927 |
+ |
void setFlucQPos(RealType charge, int snapshotNo) { |
928 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQPos[localIndex_] = charge; |
929 |
+ |
} |
930 |
+ |
|
931 |
+ |
/** |
932 |
+ |
* Adds fluctuating charge into the previous fluctuating charge of this stuntDouble |
933 |
+ |
* @param charge new fluctuating charge |
934 |
+ |
* @see #getFlucQPos |
935 |
+ |
*/ |
936 |
+ |
void addPrevFlucQPos(RealType charge) { |
937 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).flucQPos[localIndex_] += charge; |
938 |
+ |
} |
939 |
+ |
|
940 |
+ |
/** |
941 |
+ |
* Adds fluctuating charge into the current fluctuating charge of this stuntDouble |
942 |
+ |
* @param charge new fluctuating charge |
943 |
+ |
*/ |
944 |
+ |
void addFlucQPos(RealType charge) { |
945 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).flucQPos[localIndex_] += charge; |
946 |
+ |
} |
947 |
+ |
|
948 |
+ |
/** |
949 |
+ |
* Adds fluctuating charge into the fluctuating charge of this stuntDouble in specified snapshot |
950 |
+ |
* @param charge fluctuating charge to be add |
951 |
+ |
* @param snapshotNo |
952 |
+ |
* @see #getFlucQPos |
953 |
+ |
*/ |
954 |
+ |
void addflucQPos(RealType charge, int snapshotNo) { |
955 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQPos[localIndex_] += charge; |
956 |
+ |
} |
957 |
+ |
|
958 |
+ |
|
959 |
+ |
/** |
960 |
+ |
* Returns the previous charge velocity of this stuntDouble |
961 |
+ |
* @return the charge velocity of this stuntDouble |
962 |
+ |
*/ |
963 |
+ |
RealType getPrevFlucQVel() { |
964 |
+ |
return ((snapshotMan_->getPrevSnapshot())->*storage_).flucQVel[localIndex_]; |
965 |
+ |
} |
966 |
+ |
|
967 |
+ |
/** |
968 |
+ |
* Returns the current charge velocity of this stuntDouble |
969 |
+ |
* @return the charge velocity of this stuntDouble |
970 |
+ |
*/ |
971 |
+ |
RealType getFlucQVel() { |
972 |
+ |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).flucQVel[localIndex_]; |
973 |
+ |
} |
974 |
+ |
|
975 |
+ |
/** |
976 |
+ |
* Returns the charge velocity of this stuntDouble in specified snapshot |
977 |
+ |
* @return the charge velocity of this stuntDouble |
978 |
+ |
* @param snapshotNo |
979 |
+ |
*/ |
980 |
+ |
RealType getFlucQVel(int snapshotNo) { |
981 |
+ |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQVel[localIndex_]; |
982 |
+ |
} |
983 |
+ |
|
984 |
+ |
/** |
985 |
+ |
* Sets the previous charge velocity of this stuntDouble |
986 |
+ |
* @param cvel new charge velocity |
987 |
+ |
* @see #getFlucQVel |
988 |
+ |
*/ |
989 |
+ |
void setPrevFlucQVel(RealType cvel) { |
990 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).flucQVel[localIndex_] = cvel; |
991 |
+ |
} |
992 |
+ |
|
993 |
+ |
/** |
994 |
+ |
* Sets the current charge velocity of this stuntDouble |
995 |
+ |
* @param cvel new charge velocity |
996 |
+ |
*/ |
997 |
+ |
void setFlucQVel(RealType cvel) { |
998 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).flucQVel[localIndex_] = cvel; |
999 |
+ |
} |
1000 |
+ |
|
1001 |
+ |
/** |
1002 |
+ |
* Sets the charge velocity of this stuntDouble in specified snapshot |
1003 |
+ |
* @param cvel charge velocity to be set |
1004 |
+ |
* @param snapshotNo |
1005 |
+ |
* @see #getFlucQVel |
1006 |
+ |
*/ |
1007 |
+ |
void setFlucQVel(RealType cvel, int snapshotNo) { |
1008 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQVel[localIndex_] = cvel; |
1009 |
+ |
} |
1010 |
+ |
|
1011 |
+ |
/** |
1012 |
+ |
* Adds charge velocity into the previous charge velocity of this stuntDouble |
1013 |
+ |
* @param cvel new charge velocity |
1014 |
+ |
* @see #getFlucQVel |
1015 |
+ |
*/ |
1016 |
+ |
void addPrevFlucQVel(RealType cvel) { |
1017 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).flucQVel[localIndex_] += cvel; |
1018 |
+ |
} |
1019 |
+ |
|
1020 |
+ |
/** |
1021 |
+ |
* Adds charge velocity into the current charge velocity of this stuntDouble |
1022 |
+ |
* @param cvel new charge velocity |
1023 |
+ |
*/ |
1024 |
+ |
void addFlucQVel(RealType cvel) { |
1025 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).flucQVel[localIndex_] += cvel; |
1026 |
+ |
} |
1027 |
+ |
|
1028 |
+ |
/** |
1029 |
+ |
* Adds charge velocity into the charge velocity of this stuntDouble in specified snapshot |
1030 |
+ |
* @param cvel charge velocity to be add |
1031 |
+ |
* @param snapshotNo |
1032 |
+ |
* @see #getFlucQVel |
1033 |
+ |
*/ |
1034 |
+ |
void addflucQVel(RealType cvel, int snapshotNo) { |
1035 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQVel[localIndex_] += cvel; |
1036 |
+ |
} |
1037 |
+ |
|
1038 |
+ |
|
1039 |
+ |
/** |
1040 |
+ |
* Returns the previous charge force of this stuntDouble |
1041 |
+ |
* @return the charge force of this stuntDouble |
1042 |
+ |
*/ |
1043 |
+ |
RealType getPrevFlucQFrc() { |
1044 |
+ |
return ((snapshotMan_->getPrevSnapshot())->*storage_).flucQFrc[localIndex_]; |
1045 |
+ |
} |
1046 |
+ |
|
1047 |
+ |
/** |
1048 |
+ |
* Returns the current charge force of this stuntDouble |
1049 |
+ |
* @return the charge force of this stuntDouble |
1050 |
+ |
*/ |
1051 |
+ |
RealType getFlucQFrc() { |
1052 |
+ |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).flucQFrc[localIndex_]; |
1053 |
+ |
} |
1054 |
+ |
|
1055 |
+ |
/** |
1056 |
+ |
* Returns the charge force of this stuntDouble in specified snapshot |
1057 |
+ |
* @return the charge force of this stuntDouble |
1058 |
+ |
* @param snapshotNo |
1059 |
+ |
*/ |
1060 |
+ |
RealType getFlucQFrc(int snapshotNo) { |
1061 |
+ |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQFrc[localIndex_]; |
1062 |
+ |
} |
1063 |
+ |
|
1064 |
+ |
/** |
1065 |
+ |
* Sets the previous charge force of this stuntDouble |
1066 |
+ |
* @param cfrc new charge force |
1067 |
+ |
* @see #getFlucQFrc |
1068 |
+ |
*/ |
1069 |
+ |
void setPrevFlucQFrc(RealType cfrc) { |
1070 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).flucQFrc[localIndex_] = cfrc; |
1071 |
+ |
} |
1072 |
+ |
|
1073 |
+ |
/** |
1074 |
+ |
* Sets the current charge force of this stuntDouble |
1075 |
+ |
* @param cfrc new charge force |
1076 |
+ |
*/ |
1077 |
+ |
void setFlucQFrc(RealType cfrc) { |
1078 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).flucQFrc[localIndex_] = cfrc; |
1079 |
+ |
} |
1080 |
+ |
|
1081 |
+ |
/** |
1082 |
+ |
* Sets the charge force of this stuntDouble in specified snapshot |
1083 |
+ |
* @param cfrc charge force to be set |
1084 |
+ |
* @param snapshotNo |
1085 |
+ |
* @see #getFlucQFrc |
1086 |
+ |
*/ |
1087 |
+ |
void setFlucQFrc(RealType cfrc, int snapshotNo) { |
1088 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQFrc[localIndex_] = cfrc; |
1089 |
+ |
} |
1090 |
+ |
|
1091 |
+ |
/** |
1092 |
+ |
* Adds charge force into the previous charge force of this stuntDouble |
1093 |
+ |
* @param cfrc charge force to be added |
1094 |
+ |
* @see #getFlucQFrc |
1095 |
+ |
*/ |
1096 |
+ |
void addPrevFlucQFrc(RealType cfrc) { |
1097 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).flucQFrc[localIndex_] += cfrc; |
1098 |
+ |
} |
1099 |
+ |
|
1100 |
+ |
/** |
1101 |
+ |
* Adds charge force into the current charge force of this stuntDouble |
1102 |
+ |
* @param cfrc charge force to be added |
1103 |
+ |
*/ |
1104 |
+ |
void addFlucQFrc(RealType cfrc) { |
1105 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).flucQFrc[localIndex_] += cfrc; |
1106 |
+ |
} |
1107 |
+ |
|
1108 |
+ |
/** |
1109 |
+ |
* Adds charge force into the charge force of this stuntDouble in specified snapshot |
1110 |
+ |
* @param cfrc charge force to be added |
1111 |
+ |
* @param snapshotNo |
1112 |
+ |
* @see #getFlucQFrc |
1113 |
+ |
*/ |
1114 |
+ |
void addflucQFrc(RealType cfrc, int snapshotNo) { |
1115 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).flucQFrc[localIndex_] += cfrc; |
1116 |
+ |
} |
1117 |
+ |
|
1118 |
+ |
|
1119 |
+ |
/** |
1120 |
+ |
* Returns the previous electric field of this stuntDouble |
1121 |
+ |
* @return the electric field of this stuntDouble |
1122 |
+ |
*/ |
1123 |
+ |
Vector3d getPrevElectricField() { |
1124 |
+ |
return ((snapshotMan_->getPrevSnapshot())->*storage_).electricField[localIndex_]; |
1125 |
+ |
} |
1126 |
+ |
|
1127 |
+ |
/** |
1128 |
+ |
* Returns the current electric field of this stuntDouble |
1129 |
+ |
* @return the electric field of this stuntDouble |
1130 |
+ |
*/ |
1131 |
+ |
Vector3d getElectricField() { |
1132 |
+ |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).electricField[localIndex_]; |
1133 |
+ |
} |
1134 |
+ |
|
1135 |
+ |
/** |
1136 |
+ |
* Returns the electric field of this stuntDouble in specified snapshot |
1137 |
+ |
* @return the electric field of this stuntDouble |
1138 |
+ |
* @param snapshotNo |
1139 |
+ |
*/ |
1140 |
+ |
Vector3d getElectricField(int snapshotNo) { |
1141 |
+ |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).electricField[localIndex_]; |
1142 |
+ |
} |
1143 |
+ |
|
1144 |
+ |
/** |
1145 |
+ |
* Sets the previous electric field of this stuntDouble |
1146 |
+ |
* @param eField new electric field |
1147 |
+ |
* @see #getElectricField |
1148 |
+ |
*/ |
1149 |
+ |
void setPrevElectricField(const Vector3d& eField) { |
1150 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).electricField[localIndex_] = eField; |
1151 |
+ |
} |
1152 |
+ |
|
1153 |
+ |
/** |
1154 |
+ |
* Sets the current electric field of this stuntDouble |
1155 |
+ |
* @param eField new electric field |
1156 |
+ |
*/ |
1157 |
+ |
void setElectricField(const Vector3d& eField) { |
1158 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).electricField[localIndex_] = eField; |
1159 |
+ |
} |
1160 |
+ |
|
1161 |
+ |
/** |
1162 |
+ |
* Sets the electric field of this stuntDouble in specified snapshot |
1163 |
+ |
* @param eField electric field to be set |
1164 |
+ |
* @param snapshotNo |
1165 |
+ |
* @see #getElectricField |
1166 |
+ |
*/ |
1167 |
+ |
void setElectricField(const Vector3d& eField, int snapshotNo) { |
1168 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).electricField[localIndex_] = eField; |
1169 |
+ |
} |
1170 |
+ |
|
1171 |
+ |
/** |
1172 |
+ |
* Adds electric field into the previous electric field of this |
1173 |
+ |
* stuntDouble |
1174 |
+ |
* |
1175 |
+ |
* @param eField new electric field |
1176 |
+ |
* @see #getElectricField |
1177 |
+ |
*/ |
1178 |
+ |
void addPrevEelectricField(const Vector3d& eField) { |
1179 |
+ |
((snapshotMan_->getPrevSnapshot())->*storage_).electricField[localIndex_] += eField; |
1180 |
+ |
} |
1181 |
+ |
|
1182 |
+ |
/** |
1183 |
+ |
* Adds electric field into the current electric field of this stuntDouble |
1184 |
+ |
* @param eField new electric field |
1185 |
+ |
*/ |
1186 |
+ |
void addElectricField(const Vector3d& eField) { |
1187 |
+ |
((snapshotMan_->getCurrentSnapshot())->*storage_).electricField[localIndex_] += eField; |
1188 |
+ |
} |
1189 |
+ |
|
1190 |
+ |
/** |
1191 |
+ |
* Adds electric field into the electric field of this stuntDouble in specified snapshot |
1192 |
+ |
* |
1193 |
+ |
* @param eField electric field to be added |
1194 |
+ |
* @param snapshotNo |
1195 |
+ |
* @see #getElectricField |
1196 |
+ |
*/ |
1197 |
+ |
void addElectricField(const Vector3d& eField, int snapshotNo) { |
1198 |
+ |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).electricField[localIndex_] += eField; |
1199 |
+ |
} |
1200 |
+ |
|
1201 |
+ |
|
1202 |
|
/** Set the force of this stuntDouble to zero */ |
1203 |
|
void zeroForcesAndTorques(); |
1204 |
|
/** |
1282 |
|
} |
1283 |
|
|
1284 |
|
/** |
928 |
– |
* Returns the previous particle potential of this stuntDouble |
929 |
– |
* @return the particle potential of this stuntDouble |
930 |
– |
*/ |
931 |
– |
RealType getPrevParticlePot() { |
932 |
– |
return ((snapshotMan_->getPrevSnapshot())->*storage_).particlePot[localIndex_]; |
933 |
– |
} |
934 |
– |
|
935 |
– |
/** |
936 |
– |
* Returns the current particle potential of this stuntDouble |
937 |
– |
* @return the particle potential of this stuntDouble |
938 |
– |
*/ |
939 |
– |
RealType getParticlePot() { |
940 |
– |
return ((snapshotMan_->getCurrentSnapshot())->*storage_).particlePot[localIndex_]; |
941 |
– |
} |
942 |
– |
|
943 |
– |
/** |
944 |
– |
* Returns the particle potential of this stuntDouble in specified snapshot |
945 |
– |
* @return the particle potential of this stuntDouble |
946 |
– |
* @param snapshotNo |
947 |
– |
*/ |
948 |
– |
RealType getParticlePot(int snapshotNo) { |
949 |
– |
return ((snapshotMan_->getSnapshot(snapshotNo))->*storage_).particlePot[localIndex_]; |
950 |
– |
} |
951 |
– |
|
952 |
– |
/** |
953 |
– |
* Sets the previous particle potential of this stuntDouble |
954 |
– |
* @param po tnew particle potential |
955 |
– |
* @see #getParticlePot |
956 |
– |
*/ |
957 |
– |
void setPrevParticlePot(RealType pot) { |
958 |
– |
((snapshotMan_->getPrevSnapshot())->*storage_).particlePot[localIndex_] = pot; |
959 |
– |
} |
960 |
– |
|
961 |
– |
/** |
962 |
– |
* Sets the current velocity of this stuntDouble |
963 |
– |
* @param vel new velocity |
964 |
– |
*/ |
965 |
– |
void setParticlePot(RealType pot) { |
966 |
– |
((snapshotMan_->getCurrentSnapshot())->*storage_).particlePot[localIndex_] = pot; |
967 |
– |
} |
968 |
– |
|
969 |
– |
/** |
970 |
– |
* Sets the particle potential of this stuntDouble in specified snapshot |
971 |
– |
* @param pot potential to be set |
972 |
– |
* @param snapshotNo |
973 |
– |
* @see #getVel |
974 |
– |
*/ |
975 |
– |
void setParticlePot(RealType pot, int snapshotNo) { |
976 |
– |
((snapshotMan_->getSnapshot(snapshotNo))->*storage_).particlePot[localIndex_] = pot; |
977 |
– |
} |
978 |
– |
|
979 |
– |
/** |
1285 |
|
* <p> |
1286 |
< |
* The purpose of the Visitor Pattern is to encapsulate an operation that you want to perform on |
1287 |
< |
* the elements of a data structure. In this way, you can change the operation being performed |
1288 |
< |
* on a structure without the need of changing the classes of the elements that you are operating |
1289 |
< |
* on. Using a Visitor pattern allows you to decouple the classes for the data structure and the |
1290 |
< |
* algorithms used upon them |
1286 |
> |
* The purpose of the Visitor Pattern is to encapsulate an |
1287 |
> |
* operation that you want to perform on the elements of a data |
1288 |
> |
* structure. In this way, you can change the operation being |
1289 |
> |
* performed on a structure without the need of changing the |
1290 |
> |
* classes of the elements that you are operating on. Using a |
1291 |
> |
* Visitor pattern allows you to decouple the classes for the data |
1292 |
> |
* structure and the algorithms used upon them |
1293 |
|
* </p> |
1294 |
|
* @param v visitor |
1295 |
|
*/ |
1360 |
|
PropertyMap properties_; |
1361 |
|
}; |
1362 |
|
|
1363 |
< |
}//end namespace oopse |
1363 |
> |
}//end namespace OpenMD |
1364 |
|
#endif //PRIMITIVES_STUNTDOUBLE_HPP |