Fixed a bunch of stylistic and performance issues discovered via cppcheck.
Fixed a bunch of cppcheck warnings.
Linux compilation fixes (missing cstdio)
Fixed a widespread typo in the license
Fixed some picky warnings from the new Intel compiler.
A bug fix in the electric field for the new electrostatic code. Also comment fixes for Doxygen
Code readability updates.
Refactored Snapshot and Stats to use the Accumulator classes. Collected a number of methods into Thermo that belonged there.
Fixing some bugs in optimization, fixing status functions so that they dump correctly (although some things are deferred until the Stats is accumulator-based).
fixed an uninitialized option bug, fixed gcc 4.6 compilation problems
fixing some bugs, adding Shake
fixes to minimizer parameters, start of intermediate status output for minimizer.
added a minimizer parsing block
Adding initial import of optimization library