Added an adapter layer between the AtomType and the rest of the code to handle the bolt-on capabilities of new types. Fixed a long-standing bug in how storageLayout was being set to the maximum possible value. Started to add infrastructure for Polarizable and fluc-Q calculations.
updated copyright notices
still busted, but much progress
compiles, builds and runs, but is very slow
Less busted than it was on last check-in, but still won't completely build.
Many changes, and we're not quite done with this phase yet.
Migrating Sutton-Chen from Fortran over to C++
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