--- branches/development/src/nonbonded/SC.cpp 2010/10/02 19:53:32 1502 +++ branches/development/src/nonbonded/SC.cpp 2011/06/21 06:34:35 1586 @@ -302,87 +302,102 @@ namespace OpenMD { return; } - void SC::calcDensity(DensityData ddat) { + void SC::calcDensity(InteractionData &idat) { if (!initialized_) initialize(); - SCInteractionData mixer = MixingMap[make_pair(ddat.atype1, ddat.atype2)]; + SCInteractionData mixer = MixingMap[ idat.atypes ]; RealType rcij = mixer.rCut; - - if (ddat.rij < rcij) { - ddat.rho_i_at_j = mixer.phi->getValueAt(ddat.rij); - ddat.rho_j_at_i = ddat.rho_i_at_j; - } else { - ddat.rho_i_at_j = 0.0; - ddat.rho_j_at_i = 0.0; - } + if ( *(idat.rij) < rcij) { + RealType rho = mixer.phi->getValueAt( *(idat.rij) ); + *(idat.rho1) += rho; + *(idat.rho2) += rho; + } + return; } - void SC::calcFunctional(FunctionalData fdat) { + void SC::calcFunctional(SelfData &sdat) { if (!initialized_) initialize(); - SCAtomData data1 = SCMap[fdat.atype]; - - fdat.frho = - data1.c * data1.epsilon * sqrt(fdat.rho); - fdat.dfrhodrho = 0.5 * fdat.frho / fdat.rho; + SCAtomData data1 = SCMap[sdat.atype]; + + RealType u = - data1.c * data1.epsilon * sqrt( *(sdat.rho) ); + *(sdat.frho) = u; + *(sdat.dfrhodrho) = 0.5 * *(sdat.frho) / *(sdat.rho); + + (*(sdat.pot))[METALLIC_FAMILY] += u; + *(sdat.particlePot) += u; return; } - void SC::calcForce(InteractionData idat) { + void SC::calcForce(InteractionData &idat) { if (!initialized_) initialize(); - SCAtomData data1 = SCMap[idat.atype1]; - SCAtomData data2 = SCMap[idat.atype2]; + SCAtomData data1 = SCMap[idat.atypes.first]; + SCAtomData data2 = SCMap[idat.atypes.second]; - SCInteractionData mixer = MixingMap[make_pair(idat.atype1, idat.atype2)]; + SCInteractionData mixer = MixingMap[idat.atypes]; RealType rcij = mixer.rCut; - if (idat.rij < rcij) { + if ( *(idat.rij) < rcij) { RealType vcij = mixer.vCut; pair res; - res = mixer.phi->getValueAndDerivativeAt(idat.rij); + res = mixer.phi->getValueAndDerivativeAt( *(idat.rij) ); RealType rhtmp = res.first; RealType drhodr = res.second; - res = mixer.V->getValueAndDerivativeAt(idat.rij); + res = mixer.V->getValueAndDerivativeAt( *(idat.rij) ); RealType vptmp = res.first; RealType dvpdr = res.second; RealType pot_temp = vptmp - vcij; - idat.vpair += pot_temp; - - RealType dudr = drhodr * (idat.dfrho1 + idat.dfrho2) + dvpdr; + *(idat.vpair) += pot_temp; - idat.f1 += idat.d * dudr / idat.rij; + RealType dudr = drhodr * ( *(idat.dfrho1) + *(idat.dfrho2) ) + dvpdr; + + *(idat.f1) += *(idat.d) * dudr / *(idat.rij) ; - // particle_pot is the difference between the full potential - // and the full potential without the presence of a particular + // particlePot is the difference between the full potential and + // the full potential without the presence of a particular // particle (atom1). // - // This reduces the density at other particle locations, so - // we need to recompute the density at atom2 assuming atom1 - // didn't contribute. This then requires recomputing the - // density functional for atom2 as well. - // - // Most of the particle_pot heavy lifting comes from the - // pair interaction, and will be handled by vpair. + // This reduces the density at other particle locations, so we + // need to recompute the density at atom2 assuming atom1 didn't + // contribute. This then requires recomputing the density + // functional for atom2 as well. + + *(idat.particlePot1) -= data2.c * data2.epsilon * + sqrt( *(idat.rho2) - rhtmp) + *(idat.frho2); + + *(idat.particlePot2) -= data1.c * data1.epsilon * + sqrt( *(idat.rho1) - rhtmp) + *(idat.frho1); - idat.fshift1 = - data1.c * data1.epsilon * sqrt(idat.rho1 - rhtmp); - idat.fshift2 = - data2.c * data2.epsilon * sqrt(idat.rho2 - rhtmp); - - idat.pot += pot_temp; + (*(idat.pot))[METALLIC_FAMILY] += pot_temp; } return; } + + RealType SC::getSuggestedCutoffRadius(pair atypes) { + if (!initialized_) initialize(); + + map, SCInteractionData>::iterator it; + it = MixingMap.find(atypes); + if (it == MixingMap.end()) + return 0.0; + else { + SCInteractionData mixer = (*it).second; + return mixer.rCut; + } + } }