Added an adapter layer between the AtomType and the rest of the code to handle the bolt-on capabilities of new types. Fixed a long-standing bug in how storageLayout was being set to the maximum possible value. Started to add infrastructure for Polarizable and fluc-Q calculations.
updated copyright notices
Bug squashing
still busted, but much progress
compiles, builds and runs, but is very slow
Less busted than it was on last check-in, but still won't completely build.
Many changes, and we're not quite done with this phase yet.
Added GB module to the C++ side, got rid of it on the fortran side.
fixed some destructor bugs dealing with the TypeContainers
fixing calls
Added nonbonded directory. Compiles, links, runs, but gives incorrect answer.
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