75 |
|
summationMap_["SWITCHING_FUNCTION"] = esm_SWITCHING_FUNCTION; |
76 |
|
summationMap_["SHIFTED_POTENTIAL"] = esm_SHIFTED_POTENTIAL; |
77 |
|
summationMap_["SHIFTED_FORCE"] = esm_SHIFTED_FORCE; |
78 |
+ |
summationMap_["TAYLOR_SHIFTED"] = esm_TAYLOR_SHIFTED; |
79 |
|
summationMap_["REACTION_FIELD"] = esm_REACTION_FIELD; |
80 |
|
summationMap_["EWALD_FULL"] = esm_EWALD_FULL; |
81 |
|
summationMap_["EWALD_PME"] = esm_EWALD_PME; |
108 |
|
debyeToCm_ = 3.33564095198e-30; |
109 |
|
|
110 |
|
// Default number of points for electrostatic splines |
111 |
< |
np_ = 140; |
111 |
> |
np_ = 100; |
112 |
|
|
113 |
|
// variables to handle different summation methods for long-range |
114 |
|
// electrostatics: |
130 |
|
"Electrostatic::initialize: Unknown electrostaticSummationMethod.\n" |
131 |
|
"\t(Input file specified %s .)\n" |
132 |
|
"\telectrostaticSummationMethod must be one of: \"hard\",\n" |
133 |
< |
"\t\"shifted_potential\", \"shifted_force\", or \n" |
134 |
< |
"\t\"reaction_field\".\n", myMethod.c_str() ); |
133 |
> |
"\t\"shifted_potential\", \"shifted_force\",\n" |
134 |
> |
"\t\"taylor_shifted\", or \"reaction_field\".\n", |
135 |
> |
myMethod.c_str() ); |
136 |
|
painCave.isFatal = 1; |
137 |
|
simError(); |
138 |
|
} |
236 |
|
|
237 |
|
RealType r = cutoffRadius_; |
238 |
|
RealType r2 = r * r; |
239 |
+ |
RealType ric = 1.0 / r; |
240 |
+ |
RealType ric2 = ric * ric; |
241 |
|
|
242 |
|
if (screeningMethod_ == DAMPED) { |
243 |
|
a2 = dampingAlpha_ * dampingAlpha_; |
269 |
|
db0c_4 = 3.0*b2c - 6.0*r2*b3c + r2*r2*b4c; |
270 |
|
db0c_5 = -15.0*r*b3c + 10.0*r2*r*b4c - r2*r2*r*b5c; |
271 |
|
|
272 |
+ |
|
273 |
|
// working variables for the splines: |
274 |
|
RealType ri, ri2; |
275 |
|
RealType b0, b1, b2, b3, b4, b5; |
276 |
|
RealType db0_1, db0_2, db0_3, db0_4, db0_5; |
277 |
< |
RealType f0; |
278 |
< |
RealType g0, g1, g2, g3, g4; |
279 |
< |
RealType h1, h2, h3, h4; |
280 |
< |
RealType s2, s3, s4; |
281 |
< |
RealType t3, t4; |
282 |
< |
RealType u4; |
277 |
> |
RealType f, fc, f0; |
278 |
> |
RealType g, gc, g0, g1, g2, g3, g4; |
279 |
> |
RealType h, hc, h1, h2, h3, h4; |
280 |
> |
RealType s, sc, s2, s3, s4; |
281 |
> |
RealType t, tc, t3, t4; |
282 |
> |
RealType u, uc, u4; |
283 |
|
|
284 |
|
// working variables for Taylor expansion: |
285 |
|
RealType rmRc, rmRc2, rmRc3, rmRc4; |
299 |
|
|
300 |
|
// Storage vectors for the computed functions |
301 |
|
vector<RealType> rv; |
302 |
< |
vector<RealType> v01v, v02v; |
303 |
< |
vector<RealType> v11v, v12v, v13v; |
304 |
< |
vector<RealType> v21v, v22v, v23v, v24v; |
305 |
< |
vector<RealType> v31v, v32v, v33v, v34v, v35v; |
306 |
< |
vector<RealType> v41v, v42v, v43v, v44v, v45v, v46v; |
302 |
> |
vector<RealType> v01v; |
303 |
> |
vector<RealType> v11v; |
304 |
> |
vector<RealType> v21v, v22v; |
305 |
> |
vector<RealType> v31v, v32v; |
306 |
> |
vector<RealType> v41v, v42v, v43v; |
307 |
|
|
308 |
+ |
/* |
309 |
+ |
vector<RealType> dv01v; |
310 |
+ |
vector<RealType> dv11v; |
311 |
+ |
vector<RealType> dv21v, dv22v; |
312 |
+ |
vector<RealType> dv31v, dv32v; |
313 |
+ |
vector<RealType> dv41v, dv42v, dv43v; |
314 |
+ |
*/ |
315 |
+ |
|
316 |
|
for (int i = 1; i < np_ + 1; i++) { |
317 |
|
r = RealType(i) * dx; |
318 |
|
rv.push_back(r); |
352 |
|
db0_3 = 3.0*r*b2 - r2*r*b3; |
353 |
|
db0_4 = 3.0*b2 - 6.0*r2*b3 + r2*r2*b4; |
354 |
|
db0_5 = -15.0*r*b3 + 10.0*r2*r*b4 - r2*r2*r*b5; |
355 |
+ |
|
356 |
+ |
f = b0; |
357 |
+ |
fc = b0c; |
358 |
+ |
f0 = f - fc - rmRc*db0c_1; |
359 |
+ |
|
360 |
+ |
g = db0_1; |
361 |
+ |
gc = db0c_1; |
362 |
+ |
g0 = g - gc; |
363 |
+ |
g1 = g0 - rmRc *db0c_2; |
364 |
+ |
g2 = g1 - rmRc2*db0c_3; |
365 |
+ |
g3 = g2 - rmRc3*db0c_4; |
366 |
+ |
g4 = g3 - rmRc4*db0c_5; |
367 |
+ |
|
368 |
+ |
h = db0_2; |
369 |
+ |
hc = db0c_2; |
370 |
+ |
h1 = h - hc; |
371 |
+ |
h2 = h1 - rmRc *db0c_3; |
372 |
+ |
h3 = h2 - rmRc2*db0c_4; |
373 |
+ |
h4 = h3 - rmRc3*db0c_5; |
374 |
+ |
|
375 |
+ |
s = db0_3; |
376 |
+ |
sc = db0c_3; |
377 |
+ |
s2 = s - sc; |
378 |
+ |
s3 = s2 - rmRc *db0c_4; |
379 |
+ |
s4 = s3 - rmRc2*db0c_5; |
380 |
|
|
381 |
+ |
t = db0_4; |
382 |
+ |
tc = db0c_4; |
383 |
+ |
t3 = t - tc; |
384 |
+ |
t4 = t3 - rmRc *db0c_5; |
385 |
+ |
|
386 |
+ |
u = db0_5; |
387 |
+ |
uc = db0c_5; |
388 |
+ |
u4 = u - uc; |
389 |
|
|
390 |
+ |
// in what follows below, the various v functions are used for |
391 |
+ |
// potentials and torques, while the w functions show up in the |
392 |
+ |
// forces. |
393 |
+ |
|
394 |
|
switch (summationMethod_) { |
395 |
|
case esm_SHIFTED_FORCE: |
396 |
< |
f0 = b0 - b0c - rmRc*db0c_1; |
396 |
> |
|
397 |
> |
v01 = f - fc - rmRc*gc; |
398 |
> |
v11 = g - gc - rmRc*hc; |
399 |
> |
v21 = g*ri - gc*ric - rmRc*(hc - gc*ric)*ric; |
400 |
> |
v22 = h - g*ri - (hc - gc*ric) - rmRc*(sc - (hc - gc*ric)*ric); |
401 |
> |
v31 = (h-g*ri)*ri - (hc-g*ric)*ric - rmRc*(sc-2.0*(hc-gc*ric)*ric)*ric; |
402 |
> |
v32 = (s - 3.0*(h-g*ri)*ri) - (sc - 3.0*(hc-gc*ric)*ric) |
403 |
> |
- rmRc*(tc - 3.0*(sc-2.0*(hc-gc*ric)*ric)*ric); |
404 |
> |
v41 = (h - g*ri)*ri2 - (hc - gc*ric)*ric2 |
405 |
> |
- rmRc*(sc - 3.0*(hc-gc*ric)*ric)*ric2; |
406 |
> |
v42 = (s-3.0*(h-g*ri)*ri)*ri - (sc-3.0*(hc-gc*ric)*ric)*ric |
407 |
> |
- rmRc*(tc - (4.0*sc - 9.0*(hc - gc*ric)*ric)*ric)*ric; |
408 |
|
|
409 |
< |
g0 = db0_1 - db0c_1; |
410 |
< |
g1 = g0 - rmRc *db0c_2; |
411 |
< |
g2 = g1 - rmRc2*db0c_3; |
412 |
< |
g3 = g2 - rmRc3*db0c_4; |
413 |
< |
g4 = g3 - rmRc4*db0c_5; |
409 |
> |
v43 = (t - 3.0*(2.0*s - 5.0*(h - g*ri)*ri)*ri) |
410 |
> |
- (tc - 3.0*(2.0*sc - 5.0*(hc - gc*ric)*ric)*ric) |
411 |
> |
- rmRc*(uc-3.0*(2.0*tc - (7.0*sc - 15.0*(hc - gc*ric)*ric)*ric)*ric); |
412 |
> |
|
413 |
> |
dv01 = g - gc; |
414 |
> |
dv11 = h - hc; |
415 |
> |
dv21 = (h - g*ri)*ri - (hc - gc*ric)*ric; |
416 |
> |
dv22 = (s - (h - g*ri)*ri) - (sc - (hc - gc*ric)*ric); |
417 |
> |
dv31 = (s - 2.0*(h-g*ri)*ri)*ri - (sc - 2.0*(hc-gc*ric)*ric)*ric; |
418 |
> |
dv32 = (t - 3.0*(s-2.0*(h-g*ri)*ri)*ri) |
419 |
> |
- (tc - 3.0*(sc-2.0*(hc-gc*ric)*ric)*ric); |
420 |
> |
dv41 = (s - 3.0*(h - g*ri)*ri)*ri2 - (sc - 3.0*(hc - gc*ric)*ric)*ric2; |
421 |
> |
dv42 = (t - (4.0*s - 9.0*(h-g*ri)*ri)*ri)*ri |
422 |
> |
- (tc - (4.0*sc - 9.0*(hc-gc*ric)*ric)*ric)*ric; |
423 |
> |
dv43 = (u - 3.0*(2.0*t - (7.0*s - 15.0*(h - g*ri)*ri)*ri)*ri) |
424 |
> |
- (uc - 3.0*(2.0*tc - (7.0*sc - 15.0*(hc - gc*ric)*ric)*ric)*ric); |
425 |
|
|
426 |
< |
h1 = db0_2 - db0c_2; |
427 |
< |
h2 = h1 - rmRc *db0c_3; |
428 |
< |
h3 = h2 - rmRc2*db0c_4; |
357 |
< |
h4 = h3 - rmRc3*db0c_5; |
426 |
> |
break; |
427 |
> |
|
428 |
> |
case esm_TAYLOR_SHIFTED: |
429 |
|
|
430 |
< |
s2 = db0_3 - db0c_3; |
431 |
< |
s3 = s2 - rmRc *db0c_4; |
432 |
< |
s4 = s3 - rmRc2*db0c_5; |
433 |
< |
|
434 |
< |
t3 = db0_4 - db0c_4; |
435 |
< |
t4 = t3 - rmRc *db0c_5; |
436 |
< |
|
437 |
< |
u4 = db0_5 - db0c_5; |
430 |
> |
v01 = f0; |
431 |
> |
v11 = g1; |
432 |
> |
v21 = g2 * ri; |
433 |
> |
v22 = h2 - v21; |
434 |
> |
v31 = (h3 - g3 * ri) * ri; |
435 |
> |
v32 = s3 - 3.0*v31; |
436 |
> |
v41 = (h4 - g4 * ri) * ri2; |
437 |
> |
v42 = s4 * ri - 3.0*v41; |
438 |
> |
v43 = t4 - 6.0*v42 - 3.0*v41; |
439 |
> |
|
440 |
> |
dv01 = g0; |
441 |
> |
dv11 = h1; |
442 |
> |
dv21 = (h2 - g2*ri)*ri; |
443 |
> |
dv22 = (s2 - (h2 - g2*ri)*ri); |
444 |
> |
dv31 = (s3 - 2.0*(h3-g3*ri)*ri)*ri; |
445 |
> |
dv32 = (t3 - 3.0*(s3-2.0*(h3-g3*ri)*ri)*ri); |
446 |
> |
dv41 = (s4 - 3.0*(h4 - g4*ri)*ri)*ri2; |
447 |
> |
dv42 = (t4 - (4.0*s4 - 9.0*(h4-g4*ri)*ri)*ri)*ri; |
448 |
> |
dv43 = (u4 - 3.0*(2.0*t4 - (7.0*s4 - 15.0*(h4 - g4*ri)*ri)*ri)*ri); |
449 |
> |
|
450 |
|
break; |
451 |
|
|
452 |
|
case esm_SHIFTED_POTENTIAL: |
370 |
– |
f0 = b0 - b0c; |
371 |
– |
|
372 |
– |
g0 = db0_1; |
373 |
– |
g1 = db0_1 - db0c_1; |
374 |
– |
g2 = g1 - rmRc *db0c_2; |
375 |
– |
g3 = g2 - rmRc2*db0c_3; |
376 |
– |
g4 = g3 - rmRc3*db0c_4; |
453 |
|
|
454 |
< |
h1 = db0_2; |
455 |
< |
h2 = db0_2 - db0c_2; |
456 |
< |
h3 = h2 - rmRc *db0c_3; |
457 |
< |
h4 = h3 - rmRc2*db0c_4; |
458 |
< |
|
459 |
< |
s2 = db0_3; |
460 |
< |
s3 = db0_3 - db0c_3; |
461 |
< |
s4 = s3 - rmRc *db0c_4; |
454 |
> |
v01 = f - fc; |
455 |
> |
v11 = g - gc; |
456 |
> |
v21 = g*ri - gc*ric; |
457 |
> |
v22 = h - g*ri - (hc - gc*ric); |
458 |
> |
v31 = (h-g*ri)*ri - (hc-g*ric)*ric; |
459 |
> |
v32 = (s - 3.0*(h-g*ri)*ri) - (sc - 3.0*(hc-gc*ric)*ric); |
460 |
> |
v41 = (h - g*ri)*ri2 - (hc - gc*ric)*ric2; |
461 |
> |
v42 = (s-3.0*(h-g*ri)*ri)*ri - (sc-3.0*(hc-gc*ric)*ric)*ric; |
462 |
> |
v43 = (t - 3.0*(2.0*s - 5.0*(h - g*ri)*ri)*ri) |
463 |
> |
- (tc - 3.0*(2.0*sc - 5.0*(hc - gc*ric)*ric)*ric); |
464 |
|
|
465 |
< |
t3 = db0_4; |
466 |
< |
t4 = db0_4 - db0c_4; |
467 |
< |
|
468 |
< |
u4 = db0_5; |
465 |
> |
dv01 = g; |
466 |
> |
dv11 = h; |
467 |
> |
dv21 = (h - g*ri)*ri; |
468 |
> |
dv22 = (s - (h - g*ri)*ri); |
469 |
> |
dv31 = (s - 2.0*(h-g*ri)*ri)*ri; |
470 |
> |
dv32 = (t - 3.0*(s-2.0*(h-g*ri)*ri)*ri); |
471 |
> |
dv41 = (s - 3.0*(h - g*ri)*ri)*ri2; |
472 |
> |
dv42 = (t - (4.0*s - 9.0*(h-g*ri)*ri)*ri)*ri; |
473 |
> |
dv43 = (u - 3.0*(2.0*t - (7.0*s - 15.0*(h - g*ri)*ri)*ri)*ri); |
474 |
> |
|
475 |
|
break; |
476 |
|
|
477 |
|
case esm_SWITCHING_FUNCTION: |
478 |
|
case esm_HARD: |
479 |
< |
f0 = b0; |
480 |
< |
|
481 |
< |
g0 = db0_1; |
482 |
< |
g1 = g0; |
483 |
< |
g2 = g1; |
484 |
< |
g3 = g2; |
485 |
< |
g4 = g3; |
486 |
< |
|
487 |
< |
h1 = db0_2; |
488 |
< |
h2 = h1; |
489 |
< |
h3 = h2; |
490 |
< |
h4 = h3; |
491 |
< |
|
492 |
< |
s2 = db0_3; |
493 |
< |
s3 = s2; |
494 |
< |
s4 = s3; |
495 |
< |
|
496 |
< |
t3 = db0_4; |
497 |
< |
t4 = t3; |
498 |
< |
|
499 |
< |
u4 = db0_5; |
479 |
> |
|
480 |
> |
v01 = f; |
481 |
> |
v11 = g; |
482 |
> |
v21 = g*ri; |
483 |
> |
v22 = h - g*ri; |
484 |
> |
v31 = (h-g*ri)*ri; |
485 |
> |
v32 = (s - 3.0*(h-g*ri)*ri); |
486 |
> |
v41 = (h - g*ri)*ri2; |
487 |
> |
v42 = (s-3.0*(h-g*ri)*ri)*ri; |
488 |
> |
v43 = (t - 3.0*(2.0*s - 5.0*(h - g*ri)*ri)*ri); |
489 |
> |
|
490 |
> |
dv01 = g; |
491 |
> |
dv11 = h; |
492 |
> |
dv21 = (h - g*ri)*ri; |
493 |
> |
dv22 = (s - (h - g*ri)*ri); |
494 |
> |
dv31 = (s - 2.0*(h-g*ri)*ri)*ri; |
495 |
> |
dv32 = (t - 3.0*(s-2.0*(h-g*ri)*ri)*ri); |
496 |
> |
dv41 = (s - 3.0*(h - g*ri)*ri)*ri2; |
497 |
> |
dv42 = (t - (4.0*s - 9.0*(h-g*ri)*ri)*ri)*ri; |
498 |
> |
dv43 = (u - 3.0*(2.0*t - (7.0*s - 15.0*(h - g*ri)*ri)*ri)*ri); |
499 |
> |
|
500 |
|
break; |
501 |
|
|
502 |
|
case esm_REACTION_FIELD: |
503 |
< |
|
503 |
> |
|
504 |
|
// following DL_POLY's lead for shifting the image charge potential: |
505 |
< |
f0 = b0 + preRF_ * r2 |
506 |
< |
- (b0c + preRF_ * cutoffRadius_ * cutoffRadius_); |
505 |
> |
f = b0 + preRF_ * r2; |
506 |
> |
fc = b0c + preRF_ * cutoffRadius_ * cutoffRadius_; |
507 |
|
|
508 |
< |
g0 = db0_1 + preRF_ * 2.0 * r; |
509 |
< |
g1 = g0; |
426 |
< |
g2 = g1; |
427 |
< |
g3 = g2; |
428 |
< |
g4 = g3; |
429 |
< |
|
430 |
< |
h1 = db0_2 + preRF_ * 2.0; |
431 |
< |
h2 = h1; |
432 |
< |
h3 = h2; |
433 |
< |
h4 = h3; |
508 |
> |
g = db0_1 + preRF_ * 2.0 * r; |
509 |
> |
gc = db0c_1 + preRF_ * 2.0 * cutoffRadius_; |
510 |
|
|
511 |
< |
s2 = db0_3; |
512 |
< |
s3 = s2; |
513 |
< |
s4 = s3; |
514 |
< |
|
515 |
< |
t3 = db0_4; |
516 |
< |
t4 = t3; |
517 |
< |
|
518 |
< |
u4 = db0_5; |
511 |
> |
h = db0_2 + preRF_ * 2.0; |
512 |
> |
hc = db0c_2 + preRF_ * 2.0; |
513 |
> |
|
514 |
> |
v01 = f - fc; |
515 |
> |
v11 = g - gc; |
516 |
> |
v21 = g*ri - gc*ric; |
517 |
> |
v22 = h - g*ri - (hc - gc*ric); |
518 |
> |
v31 = (h-g*ri)*ri - (hc-g*ric)*ric; |
519 |
> |
v32 = (s - 3.0*(h-g*ri)*ri) - (sc - 3.0*(hc-gc*ric)*ric); |
520 |
> |
v41 = (h - g*ri)*ri2 - (hc - gc*ric)*ric2; |
521 |
> |
v42 = (s-3.0*(h-g*ri)*ri)*ri - (sc-3.0*(hc-gc*ric)*ric)*ric; |
522 |
> |
v43 = (t - 3.0*(2.0*s - 5.0*(h - g*ri)*ri)*ri) |
523 |
> |
- (tc - 3.0*(2.0*sc - 5.0*(hc - gc*ric)*ric)*ric); |
524 |
> |
|
525 |
> |
dv01 = g; |
526 |
> |
dv11 = h; |
527 |
> |
dv21 = (h - g*ri)*ri; |
528 |
> |
dv22 = (s - (h - g*ri)*ri); |
529 |
> |
dv31 = (s - 2.0*(h-g*ri)*ri)*ri; |
530 |
> |
dv32 = (t - 3.0*(s-2.0*(h-g*ri)*ri)*ri); |
531 |
> |
dv41 = (s - 3.0*(h - g*ri)*ri)*ri2; |
532 |
> |
dv42 = (t - (4.0*s - 9.0*(h-g*ri)*ri)*ri)*ri; |
533 |
> |
dv43 = (u - 3.0*(2.0*t - (7.0*s - 15.0*(h - g*ri)*ri)*ri)*ri); |
534 |
> |
|
535 |
|
break; |
536 |
|
|
537 |
|
case esm_EWALD_FULL: |
553 |
|
break; |
554 |
|
} |
555 |
|
|
464 |
– |
v01 = f0; |
465 |
– |
v02 = g0; |
466 |
– |
|
467 |
– |
v11 = g1; |
468 |
– |
v12 = g1 * ri; |
469 |
– |
v13 = h1 - v12; |
470 |
– |
|
471 |
– |
v21 = g2 * ri; |
472 |
– |
v22 = h2 - v21; |
473 |
– |
v23 = v22 * ri; |
474 |
– |
v24 = s2 - 3.0*v23; |
475 |
– |
|
476 |
– |
v31 = (h3 - g3 * ri) * ri; |
477 |
– |
v32 = s3 - 3.0*v31; |
478 |
– |
v33 = v31 * ri; |
479 |
– |
v34 = v32 * ri; |
480 |
– |
v35 = t3 - 6.0*v34 - 3.0*v33; |
481 |
– |
|
482 |
– |
v41 = (h4 - g4 * ri) * ri2; |
483 |
– |
v42 = s4 * ri - 3.0*v41; |
484 |
– |
v43 = t4 - 6.0*v42 - 3.0*v41; |
485 |
– |
v44 = v42 * ri; |
486 |
– |
v45 = v43 * ri; |
487 |
– |
v46 = u4 - 10.0*v45 - 15.0*v44; |
488 |
– |
|
556 |
|
// Add these computed values to the storage vectors for spline creation: |
557 |
|
v01v.push_back(v01); |
491 |
– |
v02v.push_back(v02); |
492 |
– |
|
558 |
|
v11v.push_back(v11); |
494 |
– |
v12v.push_back(v12); |
495 |
– |
v13v.push_back(v13); |
496 |
– |
|
559 |
|
v21v.push_back(v21); |
560 |
|
v22v.push_back(v22); |
499 |
– |
v23v.push_back(v23); |
500 |
– |
v24v.push_back(v24); |
501 |
– |
|
561 |
|
v31v.push_back(v31); |
562 |
< |
v32v.push_back(v32); |
504 |
< |
v33v.push_back(v33); |
505 |
< |
v34v.push_back(v34); |
506 |
< |
v35v.push_back(v35); |
507 |
< |
|
562 |
> |
v32v.push_back(v32); |
563 |
|
v41v.push_back(v41); |
564 |
|
v42v.push_back(v42); |
565 |
|
v43v.push_back(v43); |
566 |
< |
v44v.push_back(v44); |
567 |
< |
v45v.push_back(v45); |
568 |
< |
v46v.push_back(v46); |
566 |
> |
/* |
567 |
> |
dv01v.push_back(dv01); |
568 |
> |
dv11v.push_back(dv11); |
569 |
> |
dv21v.push_back(dv21); |
570 |
> |
dv22v.push_back(dv22); |
571 |
> |
dv31v.push_back(dv31); |
572 |
> |
dv32v.push_back(dv32); |
573 |
> |
dv41v.push_back(dv41); |
574 |
> |
dv42v.push_back(dv42); |
575 |
> |
dv43v.push_back(dv43); |
576 |
> |
*/ |
577 |
|
} |
578 |
|
|
579 |
|
// construct the spline structures and fill them with the values we've |
581 |
|
|
582 |
|
v01s = new CubicSpline(); |
583 |
|
v01s->addPoints(rv, v01v); |
521 |
– |
v02s = new CubicSpline(); |
522 |
– |
v02s->addPoints(rv, v02v); |
523 |
– |
|
584 |
|
v11s = new CubicSpline(); |
585 |
|
v11s->addPoints(rv, v11v); |
526 |
– |
v12s = new CubicSpline(); |
527 |
– |
v12s->addPoints(rv, v12v); |
528 |
– |
v13s = new CubicSpline(); |
529 |
– |
v13s->addPoints(rv, v13v); |
530 |
– |
|
586 |
|
v21s = new CubicSpline(); |
587 |
|
v21s->addPoints(rv, v21v); |
588 |
|
v22s = new CubicSpline(); |
589 |
|
v22s->addPoints(rv, v22v); |
535 |
– |
v23s = new CubicSpline(); |
536 |
– |
v23s->addPoints(rv, v23v); |
537 |
– |
v24s = new CubicSpline(); |
538 |
– |
v24s->addPoints(rv, v24v); |
539 |
– |
|
590 |
|
v31s = new CubicSpline(); |
591 |
|
v31s->addPoints(rv, v31v); |
592 |
|
v32s = new CubicSpline(); |
593 |
|
v32s->addPoints(rv, v32v); |
544 |
– |
v33s = new CubicSpline(); |
545 |
– |
v33s->addPoints(rv, v33v); |
546 |
– |
v34s = new CubicSpline(); |
547 |
– |
v34s->addPoints(rv, v34v); |
548 |
– |
v35s = new CubicSpline(); |
549 |
– |
v35s->addPoints(rv, v35v); |
550 |
– |
|
594 |
|
v41s = new CubicSpline(); |
595 |
|
v41s->addPoints(rv, v41v); |
596 |
|
v42s = new CubicSpline(); |
597 |
|
v42s->addPoints(rv, v42v); |
598 |
|
v43s = new CubicSpline(); |
599 |
|
v43s->addPoints(rv, v43v); |
557 |
– |
v44s = new CubicSpline(); |
558 |
– |
v44s->addPoints(rv, v44v); |
559 |
– |
v45s = new CubicSpline(); |
560 |
– |
v45s->addPoints(rv, v45v); |
561 |
– |
v46s = new CubicSpline(); |
562 |
– |
v46s->addPoints(rv, v46v); |
600 |
|
|
601 |
+ |
/* |
602 |
+ |
dv01s = new CubicSpline(); |
603 |
+ |
dv01s->addPoints(rv, dv01v); |
604 |
+ |
dv11s = new CubicSpline(); |
605 |
+ |
dv11s->addPoints(rv, dv11v); |
606 |
+ |
dv21s = new CubicSpline(); |
607 |
+ |
dv21s->addPoints(rv, dv21v); |
608 |
+ |
dv22s = new CubicSpline(); |
609 |
+ |
dv22s->addPoints(rv, dv22v); |
610 |
+ |
dv31s = new CubicSpline(); |
611 |
+ |
dv31s->addPoints(rv, dv31v); |
612 |
+ |
dv32s = new CubicSpline(); |
613 |
+ |
dv32s->addPoints(rv, dv32v); |
614 |
+ |
dv41s = new CubicSpline(); |
615 |
+ |
dv41s->addPoints(rv, dv41v); |
616 |
+ |
dv42s = new CubicSpline(); |
617 |
+ |
dv42s->addPoints(rv, dv42v); |
618 |
+ |
dv43s = new CubicSpline(); |
619 |
+ |
dv43s->addPoints(rv, dv43v); |
620 |
+ |
*/ |
621 |
+ |
|
622 |
|
haveElectroSplines_ = true; |
623 |
|
|
624 |
|
initialized_ = true; |
811 |
|
|
812 |
|
// needed for fields (and forces): |
813 |
|
if (a_is_Charge || b_is_Charge) { |
814 |
< |
v02 = v02s->getValueAt( *(idat.rij) ); |
814 |
> |
v01s->getValueAndDerivativeAt( *(idat.rij), v01, dv01); |
815 |
|
} |
816 |
|
if (a_is_Dipole || b_is_Dipole) { |
817 |
< |
v12 = v12s->getValueAt( *(idat.rij) ); |
818 |
< |
v13 = v13s->getValueAt( *(idat.rij) ); |
817 |
> |
v11s->getValueAndDerivativeAt( *(idat.rij), v11, dv11); |
818 |
> |
v11or = ri * v11; |
819 |
|
} |
820 |
< |
if (a_is_Quadrupole || b_is_Quadrupole) { |
821 |
< |
v23 = v23s->getValueAt( *(idat.rij) ); |
822 |
< |
v24 = v24s->getValueAt( *(idat.rij) ); |
823 |
< |
} |
820 |
> |
if (a_is_Quadrupole || b_is_Quadrupole || (a_is_Dipole && b_is_Dipole)) { |
821 |
> |
v21s->getValueAndDerivativeAt( *(idat.rij), v21, dv21); |
822 |
> |
v22s->getValueAndDerivativeAt( *(idat.rij), v22, dv22); |
823 |
> |
v22or = ri * v22; |
824 |
> |
} |
825 |
|
|
826 |
< |
// needed for potentials (and torques): |
768 |
< |
if (a_is_Charge && b_is_Charge) { |
769 |
< |
v01 = v01s->getValueAt( *(idat.rij) ); |
770 |
< |
} |
771 |
< |
if ((a_is_Charge && b_is_Dipole) || (b_is_Charge && a_is_Dipole)) { |
772 |
< |
v11 = v11s->getValueAt( *(idat.rij) ); |
773 |
< |
} |
774 |
< |
if ((a_is_Charge && b_is_Quadrupole) || (b_is_Charge && a_is_Quadrupole)) { |
775 |
< |
v21 = v21s->getValueAt( *(idat.rij) ); |
776 |
< |
v22 = v22s->getValueAt( *(idat.rij) ); |
777 |
< |
} else if (a_is_Dipole && b_is_Dipole) { |
778 |
< |
v21 = v21s->getValueAt( *(idat.rij) ); |
779 |
< |
v22 = v22s->getValueAt( *(idat.rij) ); |
780 |
< |
v23 = v23s->getValueAt( *(idat.rij) ); |
781 |
< |
v24 = v24s->getValueAt( *(idat.rij) ); |
782 |
< |
} |
826 |
> |
// needed for potentials (and forces and torques): |
827 |
|
if ((a_is_Dipole && b_is_Quadrupole) || |
828 |
|
(b_is_Dipole && a_is_Quadrupole)) { |
829 |
< |
v31 = v31s->getValueAt( *(idat.rij) ); |
830 |
< |
v32 = v32s->getValueAt( *(idat.rij) ); |
831 |
< |
v33 = v33s->getValueAt( *(idat.rij) ); |
832 |
< |
v34 = v34s->getValueAt( *(idat.rij) ); |
789 |
< |
v35 = v35s->getValueAt( *(idat.rij) ); |
829 |
> |
v31s->getValueAndDerivativeAt( *(idat.rij), v31, dv31); |
830 |
> |
v32s->getValueAndDerivativeAt( *(idat.rij), v32, dv32); |
831 |
> |
v31or = v31 * ri; |
832 |
> |
v32or = v32 * ri; |
833 |
|
} |
834 |
|
if (a_is_Quadrupole && b_is_Quadrupole) { |
835 |
< |
v41 = v41s->getValueAt( *(idat.rij) ); |
836 |
< |
v42 = v42s->getValueAt( *(idat.rij) ); |
837 |
< |
v43 = v43s->getValueAt( *(idat.rij) ); |
838 |
< |
v44 = v44s->getValueAt( *(idat.rij) ); |
839 |
< |
v45 = v45s->getValueAt( *(idat.rij) ); |
797 |
< |
v46 = v46s->getValueAt( *(idat.rij) ); |
835 |
> |
v41s->getValueAndDerivativeAt( *(idat.rij), v41, dv41); |
836 |
> |
v42s->getValueAndDerivativeAt( *(idat.rij), v42, dv42); |
837 |
> |
v43s->getValueAndDerivativeAt( *(idat.rij), v43, dv43); |
838 |
> |
v42or = v42 * ri; |
839 |
> |
v43or = v43 * ri; |
840 |
|
} |
841 |
|
|
842 |
|
// calculate the single-site contributions (fields, etc). |
852 |
|
*(idat.skippedCharge2) += C_a; |
853 |
|
} else { |
854 |
|
// only do the field if we're not excluded: |
855 |
< |
Eb -= C_a * pre11_ * v02 * rhat; |
855 |
> |
Eb -= C_a * pre11_ * dv01 * rhat; |
856 |
|
} |
857 |
|
} |
858 |
|
|
861 |
|
rdDa = dot(rhat, D_a); |
862 |
|
rxDa = cross(rhat, D_a); |
863 |
|
if (!idat.excluded) |
864 |
< |
Eb -= pre12_ * (v13 * rdDa * rhat + v12 * D_a); |
864 |
> |
Eb -= pre12_ * ((dv11-v11or) * rdDa * rhat + v11or * D_a); |
865 |
|
} |
866 |
|
|
867 |
|
if (a_is_Quadrupole) { |
872 |
|
rdQar = dot(rhat, Qar); |
873 |
|
rxQar = cross(rhat, Qar); |
874 |
|
if (!idat.excluded) |
875 |
< |
Eb -= pre14_ * ((trQa * rhat + 2.0 * Qar) * v23 + rdQar * rhat * v24); |
875 |
> |
Eb -= pre14_ * (trQa * rhat * dv21 + 2.0 * Qar * v22or |
876 |
> |
+ rdQar * rhat * (dv22 - 2.0*v22or)); |
877 |
|
} |
878 |
|
|
879 |
|
if (b_is_Charge) { |
886 |
|
*(idat.skippedCharge1) += C_b; |
887 |
|
} else { |
888 |
|
// only do the field if we're not excluded: |
889 |
< |
Ea += C_b * pre11_ * v02 * rhat; |
889 |
> |
Ea += C_b * pre11_ * dv01 * rhat; |
890 |
|
} |
891 |
|
} |
892 |
|
|
895 |
|
rdDb = dot(rhat, D_b); |
896 |
|
rxDb = cross(rhat, D_b); |
897 |
|
if (!idat.excluded) |
898 |
< |
Ea += pre12_ * (v13 * rdDb * rhat + v12 * D_b); |
898 |
> |
Ea += pre12_ * ((dv11-v11or) * rdDb * rhat + v11or * D_b); |
899 |
|
} |
900 |
|
|
901 |
|
if (b_is_Quadrupole) { |
906 |
|
rdQbr = dot(rhat, Qbr); |
907 |
|
rxQbr = cross(rhat, Qbr); |
908 |
|
if (!idat.excluded) |
909 |
< |
Ea += pre14_ * ((trQb * rhat + 2.0 * Qbr) * v23 + rdQbr * rhat * v24); |
909 |
> |
Ea += pre14_ * (trQb * rhat * dv21 + 2.0 * Qbr * v22or |
910 |
> |
+ rdQbr * rhat * (dv22 - 2.0*v22or)); |
911 |
|
} |
912 |
|
|
913 |
|
if ((a_is_Fluctuating || b_is_Fluctuating) && idat.excluded) { |
917 |
|
if (a_is_Charge) { |
918 |
|
|
919 |
|
if (b_is_Charge) { |
920 |
< |
pref = pre11_ * *(idat.electroMult); |
920 |
> |
pref = pre11_ * *(idat.electroMult); |
921 |
|
U += C_a * C_b * pref * v01; |
922 |
< |
F += C_a * C_b * pref * v02 * rhat; |
922 |
> |
F += C_a * C_b * pref * dv01 * rhat; |
923 |
|
|
924 |
|
// If this is an excluded pair, there are still indirect |
925 |
|
// interactions via the reaction field we must worry about: |
950 |
|
if (b_is_Dipole) { |
951 |
|
pref = pre12_ * *(idat.electroMult); |
952 |
|
U += C_a * pref * v11 * rdDb; |
953 |
< |
F += C_a * pref * (v13 * rdDb * rhat + v12 * D_b); |
953 |
> |
F += C_a * pref * ((dv11 - v11or) * rdDb * rhat + v11or * D_b); |
954 |
|
Tb += C_a * pref * v11 * rxDb; |
955 |
|
|
956 |
|
if (a_is_Fluctuating) dUdCa += pref * v11 * rdDb; |
970 |
|
if (b_is_Quadrupole) { |
971 |
|
pref = pre14_ * *(idat.electroMult); |
972 |
|
U += C_a * pref * (v21 * trQb + v22 * rdQbr); |
973 |
< |
F += C_a * pref * (trQb * rhat + 2.0 * Qbr) * v23; |
974 |
< |
F += C_a * pref * rdQbr * rhat * v24; |
973 |
> |
F += C_a * pref * (trQb * dv21 * rhat + 2.0 * Qbr * v22or); |
974 |
> |
F += C_a * pref * rdQbr * rhat * (dv22 - 2.0*v22or); |
975 |
|
Tb += C_a * pref * 2.0 * rxQbr * v22; |
976 |
|
|
977 |
|
if (a_is_Fluctuating) dUdCa += pref * (v21 * trQb + v22 * rdQbr); |
984 |
|
pref = pre12_ * *(idat.electroMult); |
985 |
|
|
986 |
|
U -= C_b * pref * v11 * rdDa; |
987 |
< |
F -= C_b * pref * (v13 * rdDa * rhat + v12 * D_a); |
987 |
> |
F -= C_b * pref * ((dv11-v11or) * rdDa * rhat + v11or * D_a); |
988 |
|
Ta -= C_b * pref * v11 * rxDa; |
989 |
|
|
990 |
|
if (b_is_Fluctuating) dUdCb -= pref * v11 * rdDa; |
1006 |
|
DaxDb = cross(D_a, D_b); |
1007 |
|
|
1008 |
|
U -= pref * (DadDb * v21 + rdDa * rdDb * v22); |
1009 |
< |
F -= pref * (DadDb * rhat + rdDb * D_a + rdDa * D_b)*v23; |
1010 |
< |
F -= pref * (rdDa * rdDb) * v24 * rhat; |
1009 |
> |
F -= pref * (dv21 * DadDb * rhat + v22or * (rdDb * D_a + rdDa * D_b)); |
1010 |
> |
F -= pref * (rdDa * rdDb) * (dv22 - 2.0*v22or) * rhat; |
1011 |
|
Ta += pref * ( v21 * DaxDb - v22 * rdDb * rxDa); |
1012 |
|
Tb += pref * (-v21 * DaxDb - v22 * rdDa * rxDb); |
1013 |
|
|
1020 |
|
indirect_Ta += rfContrib * DaxDb; |
1021 |
|
indirect_Tb -= rfContrib * DaxDb; |
1022 |
|
} |
979 |
– |
|
1023 |
|
} |
1024 |
|
|
1025 |
|
if (b_is_Quadrupole) { |
1029 |
|
DaxQbr = cross(D_a, Qbr); |
1030 |
|
|
1031 |
|
U -= pref * ((trQb*rdDa + 2.0*DadQbr)*v31 + rdDa*rdQbr*v32); |
1032 |
< |
F -= pref * (trQb*D_a + 2.0*DadQb) * v33; |
1033 |
< |
F -= pref * (trQb*rdDa*rhat + 2.0*DadQbr*rhat + D_a*rdQbr |
1034 |
< |
+ 2.0*rdDa*rQb)*v34; |
1035 |
< |
F -= pref * (rdDa * rdQbr * rhat * v35); |
1032 |
> |
F -= pref * (trQb*D_a + 2.0*DadQb) * v31or; |
1033 |
> |
F -= pref * (trQb*rdDa + 2.0*DadQbr) * (dv31-v31or) * rhat; |
1034 |
> |
F -= pref * (D_a*rdQbr + 2.0*rdDa*rQb) * v32or; |
1035 |
> |
F -= pref * (rdDa * rdQbr * rhat * (dv32-3.0*v32or)); |
1036 |
|
Ta += pref * ((-trQb*rxDa + 2.0 * DaxQbr)*v31 - rxDa*rdQbr*v32); |
1037 |
|
Tb += pref * ((2.0*cross(DadQb, rhat) - 2.0*DaxQbr)*v31 |
1038 |
|
- 2.0*rdDa*rxQbr*v32); |
1043 |
|
if (b_is_Charge) { |
1044 |
|
pref = pre14_ * *(idat.electroMult); |
1045 |
|
U += C_b * pref * (v21 * trQa + v22 * rdQar); |
1046 |
< |
F += C_b * pref * (trQa * rhat + 2.0 * Qar) * v23; |
1047 |
< |
F += C_b * pref * rdQar * rhat * v24; |
1046 |
> |
F += C_b * pref * (trQa * rhat * dv21 + 2.0 * Qar * v22or); |
1047 |
> |
F += C_b * pref * rdQar * rhat * (dv22 - 2.0*v22or); |
1048 |
|
Ta += C_b * pref * 2.0 * rxQar * v22; |
1049 |
|
|
1050 |
|
if (b_is_Fluctuating) dUdCb += pref * (v21 * trQa + v22 * rdQar); |
1056 |
|
DbxQar = cross(D_b, Qar); |
1057 |
|
|
1058 |
|
U += pref * ((trQa*rdDb + 2.0*DbdQar)*v31 + rdDb*rdQar*v32); |
1059 |
< |
F += pref * (trQa*D_b + 2.0*DbdQa) * v33; |
1060 |
< |
F += pref * (trQa*rdDb*rhat + 2.0*DbdQar*rhat + D_b*rdQar |
1061 |
< |
+ 2.0*rdDb*rQa)*v34; |
1062 |
< |
F += pref * (rdDb * rdQar * rhat * v35); |
1059 |
> |
F += pref * (trQa*D_b + 2.0*DbdQa) * v31or; |
1060 |
> |
F += pref * (trQa*rdDb + 2.0*DbdQar) * (dv31-v31or) * rhat; |
1061 |
> |
F += pref * (D_b*rdQar + 2.0*rdDb*rQa) * v32or; |
1062 |
> |
F += pref * (rdDb * rdQar * rhat * (dv32-3.0*v32or)); |
1063 |
|
Ta += pref * ((-2.0*cross(DbdQa, rhat) + 2.0*DbxQar)*v31 |
1064 |
|
+ 2.0*rdDb*rxQar*v32); |
1065 |
|
Tb += pref * ((trQa*rxDb - 2.0 * DbxQar)*v31 + rxDb*rdQar*v32); |
1078 |
|
U += pref * (trQa * rdQbr + trQb * rdQar + 4.0 * rQaQbr) * v42; |
1079 |
|
U += pref * (rdQar * rdQbr) * v43; |
1080 |
|
|
1081 |
< |
F += pref * rhat * (trQa * trQb + 2.0 * trQaQb)*v44; |
1082 |
< |
F += pref * rhat * (trQa * rdQbr + trQb * rdQar + 4.0 * rQaQbr)*v45; |
1083 |
< |
F += pref * rhat * (rdQar * rdQbr)*v46; |
1081 |
> |
F += pref * rhat * (trQa * trQb + 2.0 * trQaQb)*dv41; |
1082 |
> |
F += pref*rhat*(trQa*rdQbr + trQb*rdQar + 4.0*rQaQbr)*(dv42-2.0*v42or); |
1083 |
> |
F += pref * rhat * (rdQar * rdQbr)*(dv43 - 4.0*v43or); |
1084 |
|
|
1085 |
< |
F += pref * 2.0 * (trQb*rQa + trQa*rQb)*v44; |
1086 |
< |
F += pref * 4.0 * (rQaQb + QaQbr)*v44; |
1087 |
< |
F += pref * 2.0 * (rQa*rdQbr + rdQar*rQb)*v45; |
1085 |
> |
F += pref * 2.0 * (trQb*rQa + trQa*rQb) * v42or; |
1086 |
> |
F += pref * 4.0 * (rQaQb + QaQbr) * v42or; |
1087 |
> |
F += pref * 2.0 * (rQa*rdQbr + rdQar*rQb) * v43or; |
1088 |
|
|
1089 |
|
Ta += pref * (- 4.0 * QaxQb * v41); |
1090 |
|
Ta += pref * (- 2.0 * trQb * cross(rQa, rhat) |