Fixed a parallel bug in computing exclude lists. Added file versioning information in MD files. Still tracking down cutoff group bugs.
removed spurious prints, fixed one bug, but there's still a parallel problem
Fixes
bug fixes
bug fixes.
Well, the potential energy values are still garbage, but the LJ sample runs.
Added Atypes to new C++ force decomposition.
For efficiency, pointers instead of objects will be passed during main force loop.
a few more tweaks We're getting somewhat closer to deleting fortran.
still busted, but much progress
compiles, builds and runs, but is very slow
Well, it compiles and builds, but still has a bus error at runtime.
Doesn't build yet, but getting much closer...
Less busted than it was on last check-in, but still won't completely build.
The C++ side now compiles. Moving on to doForces
Many changes, and we're not quite done with this phase yet.
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