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Comparing branches/development/src/nonbonded/EAM.cpp (file contents):
Revision 1586 by gezelter, Tue Jun 21 06:34:35 2011 UTC vs.
Revision 1665 by gezelter, Tue Nov 22 20:38:56 2011 UTC

# Line 36 | Line 36
36   * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).            
37   * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
38   * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).          
39 < * [4]  Vardeman & Gezelter, in progress (2009).                        
39 > * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40 > * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41   */
42  
43   #include <stdio.h>
# Line 362 | Line 363 | namespace OpenMD {
363      if (haveCutoffRadius_)
364        if ( *(idat.rij) > eamRcut_) return;
365      
366 <    if ( *(idat.rij) < data1.rcut) {
366 >    if ( *(idat.rij) < data1.rcut)
367        *(idat.rho1) += data1.rho->getValueAt( *(idat.rij));
368 +    
369        
370 <      
371 <      if ( *(idat.rij) < data2.rcut)
372 <        *(idat.rho2) += data2.rho->getValueAt( *(idat.rij));
373 <      
372 <      return;
373 <    }
370 >    if ( *(idat.rij) < data2.rcut)
371 >      *(idat.rho2) += data2.rho->getValueAt( *(idat.rij));
372 >    
373 >    return;  
374    }
375    
376    void EAM::calcFunctional(SelfData &sdat) {
# Line 395 | Line 395 | namespace OpenMD {
395  
396      if (!initialized_) initialize();
397  
398
399
398      if (haveCutoffRadius_)
399        if ( *(idat.rij) > eamRcut_) return;
400    
401      pair<RealType, RealType> res;
402      
405    
403      EAMAtomData data1 = EAMMap[idat.atypes.first];
404      EAMAtomData data2 = EAMMap[idat.atypes.second];
405      

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