1 |
< |
/* $ANTLR 2.7.5 (20050406): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ |
1 |
> |
/* $ANTLR 2.7.7 (20110725): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ |
2 |
|
#include "MDTreeParser.hpp" |
3 |
|
#include <antlr/Token.hpp> |
4 |
|
#include <antlr/AST.hpp> |
13 |
|
} |
14 |
|
|
15 |
|
void MDTreeParser::mdfile(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
16 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST mdfile_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
16 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST mdfile_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
17 |
|
|
18 |
|
try { // for error handling |
19 |
|
{ // ( ... )* |
44 |
|
} |
45 |
|
|
46 |
|
void MDTreeParser::statement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
47 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST statement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
47 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST statement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
48 |
|
|
49 |
|
try { // for error handling |
50 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
74 |
|
_t = _retTree; |
75 |
|
break; |
76 |
|
} |
77 |
+ |
case RESTRAINT: |
78 |
+ |
{ |
79 |
+ |
restraintblock(_t); |
80 |
+ |
_t = _retTree; |
81 |
+ |
break; |
82 |
+ |
} |
83 |
+ |
case FLUCQ: |
84 |
+ |
{ |
85 |
+ |
flucqblock(_t); |
86 |
+ |
_t = _retTree; |
87 |
+ |
break; |
88 |
+ |
} |
89 |
+ |
case RNEMD: |
90 |
+ |
{ |
91 |
+ |
rnemdblock(_t); |
92 |
+ |
_t = _retTree; |
93 |
+ |
break; |
94 |
+ |
} |
95 |
|
default: |
96 |
|
{ |
97 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
107 |
|
} |
108 |
|
|
109 |
|
void MDTreeParser::assignment(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
110 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST assignment_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
110 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST assignment_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
111 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST id = ANTLR_USE_NAMESPACE(antlr)nullAST; |
112 |
|
|
113 |
|
try { // for error handling |
132 |
|
} |
133 |
|
|
134 |
|
void MDTreeParser::componentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
135 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
135 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
136 |
|
|
137 |
|
try { // for error handling |
138 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST __t9 = _t; |
139 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp2_AST_in = _t; |
140 |
|
match(_t,COMPONENT); |
141 |
|
_t = _t->getFirstChild(); |
142 |
< |
#line 62 "MDTreeParser.g" |
142 |
> |
#line 64 "MDTreeParser.g" |
143 |
|
Component* currComponet = new Component(); blockStack.push(currComponet); |
144 |
< |
#line 127 "MDTreeParser.cpp" |
144 |
> |
#line 145 "MDTreeParser.cpp" |
145 |
|
{ // ( ... )* |
146 |
|
for (;;) { |
147 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
162 |
|
_t = _t->getNextSibling(); |
163 |
|
_t = __t9; |
164 |
|
_t = _t->getNextSibling(); |
165 |
< |
#line 64 "MDTreeParser.g" |
165 |
> |
#line 66 "MDTreeParser.g" |
166 |
|
blockStack.top()->validate();blockStack.pop(); currConf->addComponent(currComponet); |
167 |
< |
#line 150 "MDTreeParser.cpp" |
167 |
> |
#line 168 "MDTreeParser.cpp" |
168 |
|
} |
169 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
170 |
|
reportError(ex); |
175 |
|
} |
176 |
|
|
177 |
|
void MDTreeParser::moleculeblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
178 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
178 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
179 |
|
|
180 |
|
try { // for error handling |
181 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t17 = _t; |
181 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t29 = _t; |
182 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp4_AST_in = _t; |
183 |
|
match(_t,MOLECULE); |
184 |
|
_t = _t->getFirstChild(); |
185 |
< |
#line 72 "MDTreeParser.g" |
185 |
> |
#line 90 "MDTreeParser.g" |
186 |
|
MoleculeStamp* currMoleculeStamp = new MoleculeStamp(); blockStack.push(currMoleculeStamp); |
187 |
< |
#line 170 "MDTreeParser.cpp" |
187 |
> |
#line 188 "MDTreeParser.cpp" |
188 |
|
{ // ( ... )* |
189 |
|
for (;;) { |
190 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
194 |
|
_t = _retTree; |
195 |
|
} |
196 |
|
else { |
197 |
< |
goto _loop19; |
197 |
> |
goto _loop31; |
198 |
|
} |
199 |
|
|
200 |
|
} |
201 |
< |
_loop19:; |
201 |
> |
_loop31:; |
202 |
|
} // ( ... )* |
203 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp5_AST_in = _t; |
204 |
|
match(_t,ENDBLOCK); |
205 |
|
_t = _t->getNextSibling(); |
206 |
< |
_t = __t17; |
206 |
> |
_t = __t29; |
207 |
|
_t = _t->getNextSibling(); |
208 |
< |
#line 74 "MDTreeParser.g" |
208 |
> |
#line 92 "MDTreeParser.g" |
209 |
|
blockStack.top()->validate(); blockStack.pop(); currConf->addMoleculeStamp(currMoleculeStamp); |
210 |
< |
#line 193 "MDTreeParser.cpp" |
210 |
> |
#line 211 "MDTreeParser.cpp" |
211 |
|
} |
212 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
213 |
|
reportError(ex); |
218 |
|
} |
219 |
|
|
220 |
|
void MDTreeParser::zconstraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
221 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
221 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
222 |
|
|
223 |
|
try { // for error handling |
224 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST __t13 = _t; |
225 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp6_AST_in = _t; |
226 |
|
match(_t,ZCONSTRAINT); |
227 |
|
_t = _t->getFirstChild(); |
228 |
< |
#line 67 "MDTreeParser.g" |
228 |
> |
#line 69 "MDTreeParser.g" |
229 |
|
ZConsStamp* currZConsStamp = new ZConsStamp(); blockStack.push(currZConsStamp); |
230 |
< |
#line 213 "MDTreeParser.cpp" |
230 |
> |
#line 231 "MDTreeParser.cpp" |
231 |
|
{ // ( ... )* |
232 |
|
for (;;) { |
233 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
248 |
|
_t = _t->getNextSibling(); |
249 |
|
_t = __t13; |
250 |
|
_t = _t->getNextSibling(); |
251 |
< |
#line 69 "MDTreeParser.g" |
251 |
> |
#line 71 "MDTreeParser.g" |
252 |
|
blockStack.top()->validate();blockStack.pop(); currConf->addZConsStamp(currZConsStamp); |
253 |
< |
#line 236 "MDTreeParser.cpp" |
253 |
> |
#line 254 "MDTreeParser.cpp" |
254 |
|
} |
255 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
256 |
|
reportError(ex); |
260 |
|
_retTree = _t; |
261 |
|
} |
262 |
|
|
263 |
+ |
void MDTreeParser::restraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
264 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST restraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
265 |
+ |
|
266 |
+ |
try { // for error handling |
267 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t17 = _t; |
268 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; |
269 |
+ |
match(_t,RESTRAINT); |
270 |
+ |
_t = _t->getFirstChild(); |
271 |
+ |
#line 74 "MDTreeParser.g" |
272 |
+ |
RestraintStamp* currRestraintStamp = new RestraintStamp(); blockStack.push(currRestraintStamp); |
273 |
+ |
#line 274 "MDTreeParser.cpp" |
274 |
+ |
{ // ( ... )* |
275 |
+ |
for (;;) { |
276 |
+ |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
277 |
+ |
_t = ASTNULL; |
278 |
+ |
if ((_t->getType() == ASSIGNEQUAL)) { |
279 |
+ |
assignment(_t); |
280 |
+ |
_t = _retTree; |
281 |
+ |
} |
282 |
+ |
else { |
283 |
+ |
goto _loop19; |
284 |
+ |
} |
285 |
+ |
|
286 |
+ |
} |
287 |
+ |
_loop19:; |
288 |
+ |
} // ( ... )* |
289 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; |
290 |
+ |
match(_t,ENDBLOCK); |
291 |
+ |
_t = _t->getNextSibling(); |
292 |
+ |
_t = __t17; |
293 |
+ |
_t = _t->getNextSibling(); |
294 |
+ |
#line 76 "MDTreeParser.g" |
295 |
+ |
blockStack.top()->validate();blockStack.pop(); currConf->addRestraintStamp(currRestraintStamp); |
296 |
+ |
#line 297 "MDTreeParser.cpp" |
297 |
+ |
} |
298 |
+ |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
299 |
+ |
reportError(ex); |
300 |
+ |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
301 |
+ |
_t = _t->getNextSibling(); |
302 |
+ |
} |
303 |
+ |
_retTree = _t; |
304 |
+ |
} |
305 |
+ |
|
306 |
+ |
void MDTreeParser::flucqblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
307 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST flucqblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
308 |
+ |
|
309 |
+ |
try { // for error handling |
310 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t21 = _t; |
311 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; |
312 |
+ |
match(_t,FLUCQ); |
313 |
+ |
_t = _t->getFirstChild(); |
314 |
+ |
#line 79 "MDTreeParser.g" |
315 |
+ |
FluctuatingChargeParameters* flucQpars = new FluctuatingChargeParameters(); blockStack.push(flucQpars); |
316 |
+ |
#line 317 "MDTreeParser.cpp" |
317 |
+ |
{ // ( ... )* |
318 |
+ |
for (;;) { |
319 |
+ |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
320 |
+ |
_t = ASTNULL; |
321 |
+ |
if ((_t->getType() == ASSIGNEQUAL)) { |
322 |
+ |
assignment(_t); |
323 |
+ |
_t = _retTree; |
324 |
+ |
} |
325 |
+ |
else { |
326 |
+ |
goto _loop23; |
327 |
+ |
} |
328 |
+ |
|
329 |
+ |
} |
330 |
+ |
_loop23:; |
331 |
+ |
} // ( ... )* |
332 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; |
333 |
+ |
match(_t,ENDBLOCK); |
334 |
+ |
_t = _t->getNextSibling(); |
335 |
+ |
_t = __t21; |
336 |
+ |
_t = _t->getNextSibling(); |
337 |
+ |
#line 81 "MDTreeParser.g" |
338 |
+ |
blockStack.top()->validate();blockStack.pop(); currConf->addFluctuatingChargeParameters(flucQpars); |
339 |
+ |
#line 340 "MDTreeParser.cpp" |
340 |
+ |
} |
341 |
+ |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
342 |
+ |
reportError(ex); |
343 |
+ |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
344 |
+ |
_t = _t->getNextSibling(); |
345 |
+ |
} |
346 |
+ |
_retTree = _t; |
347 |
+ |
} |
348 |
+ |
|
349 |
+ |
void MDTreeParser::rnemdblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
350 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST rnemdblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
351 |
+ |
|
352 |
+ |
try { // for error handling |
353 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t25 = _t; |
354 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; |
355 |
+ |
match(_t,RNEMD); |
356 |
+ |
_t = _t->getFirstChild(); |
357 |
+ |
#line 84 "MDTreeParser.g" |
358 |
+ |
RNEMDParameters* rnemdPars = new RNEMDParameters(); blockStack.push(rnemdPars); |
359 |
+ |
#line 360 "MDTreeParser.cpp" |
360 |
+ |
{ // ( ... )* |
361 |
+ |
for (;;) { |
362 |
+ |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
363 |
+ |
_t = ASTNULL; |
364 |
+ |
if ((_t->getType() == ASSIGNEQUAL)) { |
365 |
+ |
assignment(_t); |
366 |
+ |
_t = _retTree; |
367 |
+ |
} |
368 |
+ |
else { |
369 |
+ |
goto _loop27; |
370 |
+ |
} |
371 |
+ |
|
372 |
+ |
} |
373 |
+ |
_loop27:; |
374 |
+ |
} // ( ... )* |
375 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; |
376 |
+ |
match(_t,ENDBLOCK); |
377 |
+ |
_t = _t->getNextSibling(); |
378 |
+ |
_t = __t25; |
379 |
+ |
_t = _t->getNextSibling(); |
380 |
+ |
#line 86 "MDTreeParser.g" |
381 |
+ |
blockStack.top()->validate();blockStack.pop(); currConf->addRNEMDParameters(rnemdPars); |
382 |
+ |
#line 383 "MDTreeParser.cpp" |
383 |
+ |
} |
384 |
+ |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
385 |
+ |
reportError(ex); |
386 |
+ |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
387 |
+ |
_t = _t->getNextSibling(); |
388 |
+ |
} |
389 |
+ |
_retTree = _t; |
390 |
+ |
} |
391 |
+ |
|
392 |
|
void MDTreeParser::constant(ANTLR_USE_NAMESPACE(antlr)RefAST _t, |
393 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST id |
394 |
|
) { |
395 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
395 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
396 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST str1 = ANTLR_USE_NAMESPACE(antlr)nullAST; |
397 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST str2 = ANTLR_USE_NAMESPACE(antlr)nullAST; |
398 |
< |
#line 47 "MDTreeParser.g" |
398 |
> |
#line 49 "MDTreeParser.g" |
399 |
|
|
400 |
|
int ival; |
401 |
< |
double dval; |
401 |
> |
RealType dval; |
402 |
|
|
403 |
< |
#line 257 "MDTreeParser.cpp" |
403 |
> |
#line 404 "MDTreeParser.cpp" |
404 |
|
|
405 |
|
try { // for error handling |
406 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
411 |
|
{ |
412 |
|
ival=intConst(_t); |
413 |
|
_t = _retTree; |
414 |
< |
#line 52 "MDTreeParser.g" |
414 |
> |
#line 54 "MDTreeParser.g" |
415 |
|
blockStack.top()->assign(id->getText(), ival); |
416 |
< |
#line 270 "MDTreeParser.cpp" |
416 |
> |
#line 417 "MDTreeParser.cpp" |
417 |
|
break; |
418 |
|
} |
419 |
|
case NUM_FLOAT: |
421 |
|
{ |
422 |
|
dval=floatConst(_t); |
423 |
|
_t = _retTree; |
424 |
< |
#line 53 "MDTreeParser.g" |
424 |
> |
#line 55 "MDTreeParser.g" |
425 |
|
blockStack.top()->assign(id->getText(), dval); |
426 |
< |
#line 280 "MDTreeParser.cpp" |
426 |
> |
#line 427 "MDTreeParser.cpp" |
427 |
|
break; |
428 |
|
} |
429 |
|
case ID: |
431 |
|
str1 = _t; |
432 |
|
match(_t,ID); |
433 |
|
_t = _t->getNextSibling(); |
434 |
< |
#line 54 "MDTreeParser.g" |
434 |
> |
#line 56 "MDTreeParser.g" |
435 |
|
blockStack.top()->assign(id->getText(), str1->getText()); |
436 |
< |
#line 290 "MDTreeParser.cpp" |
436 |
> |
#line 437 "MDTreeParser.cpp" |
437 |
|
break; |
438 |
|
} |
439 |
|
case StringLiteral: |
441 |
|
str2 = _t; |
442 |
|
match(_t,StringLiteral); |
443 |
|
_t = _t->getNextSibling(); |
444 |
< |
#line 55 "MDTreeParser.g" |
444 |
> |
#line 57 "MDTreeParser.g" |
445 |
|
std::string s = str2->getText(); |
446 |
|
s = s.substr(1, s.length()-2); |
447 |
|
blockStack.top()->assign(id->getText(),s); |
448 |
|
|
449 |
< |
#line 303 "MDTreeParser.cpp" |
449 |
> |
#line 450 "MDTreeParser.cpp" |
450 |
|
break; |
451 |
|
} |
452 |
|
default: |
464 |
|
} |
465 |
|
|
466 |
|
int MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
467 |
< |
#line 242 "MDTreeParser.g" |
467 |
> |
#line 280 "MDTreeParser.g" |
468 |
|
int ival; |
469 |
< |
#line 323 "MDTreeParser.cpp" |
470 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
469 |
> |
#line 470 "MDTreeParser.cpp" |
470 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
471 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST i1 = ANTLR_USE_NAMESPACE(antlr)nullAST; |
472 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST i2 = ANTLR_USE_NAMESPACE(antlr)nullAST; |
473 |
|
|
480 |
|
i1 = _t; |
481 |
|
match(_t,NUM_INT); |
482 |
|
_t = _t->getNextSibling(); |
483 |
< |
#line 243 "MDTreeParser.g" |
483 |
> |
#line 281 "MDTreeParser.g" |
484 |
|
ival = lexi_cast<int>(i1->getText()); |
485 |
< |
#line 339 "MDTreeParser.cpp" |
485 |
> |
#line 486 "MDTreeParser.cpp" |
486 |
|
break; |
487 |
|
} |
488 |
|
case NUM_LONG: |
490 |
|
i2 = _t; |
491 |
|
match(_t,NUM_LONG); |
492 |
|
_t = _t->getNextSibling(); |
493 |
< |
#line 244 "MDTreeParser.g" |
493 |
> |
#line 282 "MDTreeParser.g" |
494 |
|
ival = lexi_cast<int>(i2->getText()); |
495 |
< |
#line 349 "MDTreeParser.cpp" |
495 |
> |
#line 496 "MDTreeParser.cpp" |
496 |
|
break; |
497 |
|
} |
498 |
|
default: |
510 |
|
return ival; |
511 |
|
} |
512 |
|
|
513 |
< |
double MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
514 |
< |
#line 256 "MDTreeParser.g" |
515 |
< |
double dval; |
516 |
< |
#line 370 "MDTreeParser.cpp" |
517 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
513 |
> |
RealType MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
514 |
> |
#line 294 "MDTreeParser.g" |
515 |
> |
RealType dval; |
516 |
> |
#line 517 "MDTreeParser.cpp" |
517 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
518 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST d1 = ANTLR_USE_NAMESPACE(antlr)nullAST; |
519 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST d2 = ANTLR_USE_NAMESPACE(antlr)nullAST; |
520 |
|
|
527 |
|
d1 = _t; |
528 |
|
match(_t,NUM_FLOAT); |
529 |
|
_t = _t->getNextSibling(); |
530 |
< |
#line 257 "MDTreeParser.g" |
531 |
< |
dval = lexi_cast<double>(d1->getText()); |
532 |
< |
#line 386 "MDTreeParser.cpp" |
530 |
> |
#line 295 "MDTreeParser.g" |
531 |
> |
dval = lexi_cast<RealType>(d1->getText()); |
532 |
> |
#line 533 "MDTreeParser.cpp" |
533 |
|
break; |
534 |
|
} |
535 |
|
case NUM_DOUBLE: |
537 |
|
d2 = _t; |
538 |
|
match(_t,NUM_DOUBLE); |
539 |
|
_t = _t->getNextSibling(); |
540 |
< |
#line 258 "MDTreeParser.g" |
541 |
< |
dval = lexi_cast<double>(d2->getText()); |
542 |
< |
#line 396 "MDTreeParser.cpp" |
540 |
> |
#line 296 "MDTreeParser.g" |
541 |
> |
dval = lexi_cast<RealType>(d2->getText()); |
542 |
> |
#line 543 "MDTreeParser.cpp" |
543 |
|
break; |
544 |
|
} |
545 |
|
default: |
558 |
|
} |
559 |
|
|
560 |
|
void MDTreeParser::moleculestatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
561 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST moleculestatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
561 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST moleculestatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
562 |
|
|
563 |
|
try { // for error handling |
564 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
594 |
|
_t = _retTree; |
595 |
|
break; |
596 |
|
} |
597 |
+ |
case INVERSION: |
598 |
+ |
{ |
599 |
+ |
inversionblock(_t); |
600 |
+ |
_t = _retTree; |
601 |
+ |
break; |
602 |
+ |
} |
603 |
|
case RIGIDBODY: |
604 |
|
{ |
605 |
|
rigidbodyblock(_t); |
633 |
|
} |
634 |
|
|
635 |
|
void MDTreeParser::atomblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
636 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
637 |
< |
#line 87 "MDTreeParser.g" |
636 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
637 |
> |
#line 106 "MDTreeParser.g" |
638 |
|
|
639 |
|
int index; |
640 |
|
|
641 |
< |
#line 489 "MDTreeParser.cpp" |
641 |
> |
#line 642 "MDTreeParser.cpp" |
642 |
|
|
643 |
|
try { // for error handling |
644 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t22 = _t; |
645 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; |
644 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t34 = _t; |
645 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; |
646 |
|
match(_t,ATOM); |
647 |
|
_t = _t->getFirstChild(); |
648 |
|
index=intConst(_t); |
649 |
|
_t = _retTree; |
650 |
< |
#line 91 "MDTreeParser.g" |
650 |
> |
#line 110 "MDTreeParser.g" |
651 |
|
AtomStamp* currAtomStamp = new AtomStamp(index); blockStack.push(currAtomStamp); |
652 |
< |
#line 500 "MDTreeParser.cpp" |
652 |
> |
#line 653 "MDTreeParser.cpp" |
653 |
|
{ // ( ... )* |
654 |
|
for (;;) { |
655 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
659 |
|
_t = _retTree; |
660 |
|
} |
661 |
|
else { |
662 |
< |
goto _loop24; |
662 |
> |
goto _loop36; |
663 |
|
} |
664 |
|
|
665 |
|
} |
666 |
< |
_loop24:; |
666 |
> |
_loop36:; |
667 |
|
} // ( ... )* |
668 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; |
668 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; |
669 |
|
match(_t,ENDBLOCK); |
670 |
|
_t = _t->getNextSibling(); |
671 |
< |
_t = __t22; |
671 |
> |
_t = __t34; |
672 |
|
_t = _t->getNextSibling(); |
673 |
< |
#line 93 "MDTreeParser.g" |
673 |
> |
#line 112 "MDTreeParser.g" |
674 |
|
|
675 |
|
blockStack.top()->validate(); |
676 |
|
blockStack.pop(); |
677 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
678 |
|
currMoleculeStamp->addAtomStamp(currAtomStamp); |
679 |
|
|
680 |
< |
#line 528 "MDTreeParser.cpp" |
680 |
> |
#line 681 "MDTreeParser.cpp" |
681 |
|
} |
682 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
683 |
|
reportError(ex); |
688 |
|
} |
689 |
|
|
690 |
|
void MDTreeParser::bondblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
691 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
691 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
692 |
|
|
693 |
|
try { // for error handling |
694 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t29 = _t; |
695 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; |
694 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t41 = _t; |
695 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; |
696 |
|
match(_t,BOND); |
697 |
|
_t = _t->getFirstChild(); |
698 |
< |
#line 113 "MDTreeParser.g" |
698 |
> |
#line 132 "MDTreeParser.g" |
699 |
|
BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); |
700 |
< |
#line 548 "MDTreeParser.cpp" |
700 |
> |
#line 701 "MDTreeParser.cpp" |
701 |
|
{ // ( ... )* |
702 |
|
for (;;) { |
703 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
707 |
|
_t = _retTree; |
708 |
|
} |
709 |
|
else { |
710 |
< |
goto _loop31; |
710 |
> |
goto _loop43; |
711 |
|
} |
712 |
|
|
713 |
|
} |
714 |
< |
_loop31:; |
714 |
> |
_loop43:; |
715 |
|
} // ( ... )* |
716 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; |
716 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; |
717 |
|
match(_t,ENDBLOCK); |
718 |
|
_t = _t->getNextSibling(); |
719 |
< |
_t = __t29; |
719 |
> |
_t = __t41; |
720 |
|
_t = _t->getNextSibling(); |
721 |
< |
#line 115 "MDTreeParser.g" |
721 |
> |
#line 134 "MDTreeParser.g" |
722 |
|
|
723 |
|
blockStack.pop(); |
724 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
725 |
|
currMoleculeStamp->addBondStamp(currBondStamp); |
726 |
|
|
727 |
< |
#line 575 "MDTreeParser.cpp" |
727 |
> |
#line 728 "MDTreeParser.cpp" |
728 |
|
} |
729 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
730 |
|
reportError(ex); |
735 |
|
} |
736 |
|
|
737 |
|
void MDTreeParser::bendblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
738 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
738 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
739 |
|
|
740 |
|
try { // for error handling |
741 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t35 = _t; |
742 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; |
741 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t47 = _t; |
742 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; |
743 |
|
match(_t,BEND); |
744 |
|
_t = _t->getFirstChild(); |
745 |
< |
#line 131 "MDTreeParser.g" |
745 |
> |
#line 150 "MDTreeParser.g" |
746 |
|
BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); |
747 |
< |
#line 595 "MDTreeParser.cpp" |
747 |
> |
#line 748 "MDTreeParser.cpp" |
748 |
|
{ // ( ... )* |
749 |
|
for (;;) { |
750 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
754 |
|
_t = _retTree; |
755 |
|
} |
756 |
|
else { |
757 |
< |
goto _loop37; |
757 |
> |
goto _loop49; |
758 |
|
} |
759 |
|
|
760 |
|
} |
761 |
< |
_loop37:; |
761 |
> |
_loop49:; |
762 |
|
} // ( ... )* |
763 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; |
763 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; |
764 |
|
match(_t,ENDBLOCK); |
765 |
|
_t = _t->getNextSibling(); |
766 |
< |
_t = __t35; |
766 |
> |
_t = __t47; |
767 |
|
_t = _t->getNextSibling(); |
768 |
< |
#line 133 "MDTreeParser.g" |
768 |
> |
#line 152 "MDTreeParser.g" |
769 |
|
|
770 |
|
blockStack.top()->validate(); |
771 |
|
blockStack.pop(); |
772 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
773 |
|
currMoleculeStamp->addBendStamp(currBendStamp); |
774 |
|
|
775 |
< |
#line 623 "MDTreeParser.cpp" |
775 |
> |
#line 776 "MDTreeParser.cpp" |
776 |
|
} |
777 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
778 |
|
reportError(ex); |
783 |
|
} |
784 |
|
|
785 |
|
void MDTreeParser::torsionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
786 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
786 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
787 |
|
|
788 |
|
try { // for error handling |
789 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t41 = _t; |
790 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; |
789 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t53 = _t; |
790 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; |
791 |
|
match(_t,TORSION); |
792 |
|
_t = _t->getFirstChild(); |
793 |
< |
#line 150 "MDTreeParser.g" |
793 |
> |
#line 169 "MDTreeParser.g" |
794 |
|
TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); |
795 |
< |
#line 643 "MDTreeParser.cpp" |
795 |
> |
#line 796 "MDTreeParser.cpp" |
796 |
|
{ // ( ... )* |
797 |
|
for (;;) { |
798 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
802 |
|
_t = _retTree; |
803 |
|
} |
804 |
|
else { |
805 |
< |
goto _loop43; |
805 |
> |
goto _loop55; |
806 |
|
} |
807 |
|
|
808 |
|
} |
809 |
< |
_loop43:; |
809 |
> |
_loop55:; |
810 |
|
} // ( ... )* |
811 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; |
811 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; |
812 |
|
match(_t,ENDBLOCK); |
813 |
|
_t = _t->getNextSibling(); |
814 |
< |
_t = __t41; |
814 |
> |
_t = __t53; |
815 |
|
_t = _t->getNextSibling(); |
816 |
< |
#line 152 "MDTreeParser.g" |
816 |
> |
#line 171 "MDTreeParser.g" |
817 |
|
|
818 |
|
blockStack.top()->validate(); |
819 |
|
blockStack.pop(); |
820 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
821 |
|
currMoleculeStamp->addTorsionStamp(currTorsionStamp); |
822 |
|
|
823 |
< |
#line 671 "MDTreeParser.cpp" |
823 |
> |
#line 824 "MDTreeParser.cpp" |
824 |
> |
} |
825 |
> |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
826 |
> |
reportError(ex); |
827 |
> |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
828 |
> |
_t = _t->getNextSibling(); |
829 |
> |
} |
830 |
> |
_retTree = _t; |
831 |
> |
} |
832 |
> |
|
833 |
> |
void MDTreeParser::inversionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
834 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
835 |
> |
|
836 |
> |
try { // for error handling |
837 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t59 = _t; |
838 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; |
839 |
> |
match(_t,INVERSION); |
840 |
> |
_t = _t->getFirstChild(); |
841 |
> |
#line 188 "MDTreeParser.g" |
842 |
> |
InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); |
843 |
> |
#line 844 "MDTreeParser.cpp" |
844 |
> |
{ // ( ... )* |
845 |
> |
for (;;) { |
846 |
> |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
847 |
> |
_t = ASTNULL; |
848 |
> |
if ((_t->getType() == CENTER || _t->getType() == ASSIGNEQUAL)) { |
849 |
> |
inversionstatement(_t); |
850 |
> |
_t = _retTree; |
851 |
> |
} |
852 |
> |
else { |
853 |
> |
goto _loop61; |
854 |
> |
} |
855 |
> |
|
856 |
> |
} |
857 |
> |
_loop61:; |
858 |
> |
} // ( ... )* |
859 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; |
860 |
> |
match(_t,ENDBLOCK); |
861 |
> |
_t = _t->getNextSibling(); |
862 |
> |
_t = __t59; |
863 |
> |
_t = _t->getNextSibling(); |
864 |
> |
#line 190 "MDTreeParser.g" |
865 |
> |
|
866 |
> |
blockStack.top()->validate(); |
867 |
> |
blockStack.pop(); |
868 |
> |
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
869 |
> |
currMoleculeStamp->addInversionStamp(currInversionStamp); |
870 |
> |
|
871 |
> |
#line 872 "MDTreeParser.cpp" |
872 |
|
} |
873 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
874 |
|
reportError(ex); |
879 |
|
} |
880 |
|
|
881 |
|
void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
882 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
883 |
< |
#line 169 "MDTreeParser.g" |
882 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
883 |
> |
#line 207 "MDTreeParser.g" |
884 |
|
|
885 |
|
int index; |
886 |
|
|
887 |
< |
#line 687 "MDTreeParser.cpp" |
887 |
> |
#line 888 "MDTreeParser.cpp" |
888 |
|
|
889 |
|
try { // for error handling |
890 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t47 = _t; |
891 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; |
890 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t65 = _t; |
891 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; |
892 |
|
match(_t,RIGIDBODY); |
893 |
|
_t = _t->getFirstChild(); |
894 |
|
index=intConst(_t); |
895 |
|
_t = _retTree; |
896 |
< |
#line 173 "MDTreeParser.g" |
896 |
> |
#line 211 "MDTreeParser.g" |
897 |
|
RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); |
898 |
< |
#line 698 "MDTreeParser.cpp" |
898 |
> |
#line 899 "MDTreeParser.cpp" |
899 |
|
{ // ( ... )* |
900 |
|
for (;;) { |
901 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
905 |
|
_t = _retTree; |
906 |
|
} |
907 |
|
else { |
908 |
< |
goto _loop49; |
908 |
> |
goto _loop67; |
909 |
|
} |
910 |
|
|
911 |
|
} |
912 |
< |
_loop49:; |
912 |
> |
_loop67:; |
913 |
|
} // ( ... )* |
914 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; |
914 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; |
915 |
|
match(_t,ENDBLOCK); |
916 |
|
_t = _t->getNextSibling(); |
917 |
< |
_t = __t47; |
917 |
> |
_t = __t65; |
918 |
|
_t = _t->getNextSibling(); |
919 |
< |
#line 175 "MDTreeParser.g" |
919 |
> |
#line 213 "MDTreeParser.g" |
920 |
|
|
921 |
|
blockStack.top()->validate(); |
922 |
|
blockStack.pop(); |
923 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
924 |
|
currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); |
925 |
|
|
926 |
< |
#line 726 "MDTreeParser.cpp" |
926 |
> |
#line 927 "MDTreeParser.cpp" |
927 |
|
} |
928 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
929 |
|
reportError(ex); |
934 |
|
} |
935 |
|
|
936 |
|
void MDTreeParser::cutoffgroupblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
937 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
937 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
938 |
|
|
939 |
|
try { // for error handling |
940 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t53 = _t; |
941 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; |
940 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; |
941 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; |
942 |
|
match(_t,CUTOFFGROUP); |
943 |
|
_t = _t->getFirstChild(); |
944 |
< |
#line 192 "MDTreeParser.g" |
944 |
> |
#line 230 "MDTreeParser.g" |
945 |
|
CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); |
946 |
< |
#line 746 "MDTreeParser.cpp" |
946 |
> |
#line 947 "MDTreeParser.cpp" |
947 |
|
{ // ( ... )* |
948 |
|
for (;;) { |
949 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
953 |
|
_t = _retTree; |
954 |
|
} |
955 |
|
else { |
956 |
< |
goto _loop55; |
956 |
> |
goto _loop73; |
957 |
|
} |
958 |
|
|
959 |
|
} |
960 |
< |
_loop55:; |
960 |
> |
_loop73:; |
961 |
|
} // ( ... )* |
962 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; |
962 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; |
963 |
|
match(_t,ENDBLOCK); |
964 |
|
_t = _t->getNextSibling(); |
965 |
< |
_t = __t53; |
965 |
> |
_t = __t71; |
966 |
|
_t = _t->getNextSibling(); |
967 |
< |
#line 194 "MDTreeParser.g" |
967 |
> |
#line 232 "MDTreeParser.g" |
968 |
|
|
969 |
|
blockStack.top()->validate(); |
970 |
|
blockStack.pop(); |
971 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
972 |
|
currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); |
973 |
|
|
974 |
< |
#line 774 "MDTreeParser.cpp" |
974 |
> |
#line 975 "MDTreeParser.cpp" |
975 |
|
} |
976 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
977 |
|
reportError(ex); |
982 |
|
} |
983 |
|
|
984 |
|
void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
985 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
986 |
< |
#line 211 "MDTreeParser.g" |
985 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
986 |
> |
#line 249 "MDTreeParser.g" |
987 |
|
int ival; |
988 |
< |
#line 788 "MDTreeParser.cpp" |
988 |
> |
#line 989 "MDTreeParser.cpp" |
989 |
|
|
990 |
|
try { // for error handling |
991 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t59 = _t; |
992 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; |
991 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; |
992 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; |
993 |
|
match(_t,FRAGMENT); |
994 |
|
_t = _t->getFirstChild(); |
995 |
|
ival=intConst(_t); |
996 |
|
_t = _retTree; |
997 |
< |
#line 212 "MDTreeParser.g" |
997 |
> |
#line 250 "MDTreeParser.g" |
998 |
|
FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); |
999 |
< |
#line 799 "MDTreeParser.cpp" |
999 |
> |
#line 1000 "MDTreeParser.cpp" |
1000 |
|
{ // ( ... )* |
1001 |
|
for (;;) { |
1002 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1006 |
|
_t = _retTree; |
1007 |
|
} |
1008 |
|
else { |
1009 |
< |
goto _loop61; |
1009 |
> |
goto _loop79; |
1010 |
|
} |
1011 |
|
|
1012 |
|
} |
1013 |
< |
_loop61:; |
1013 |
> |
_loop79:; |
1014 |
|
} // ( ... )* |
1015 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; |
1015 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; |
1016 |
|
match(_t,ENDBLOCK); |
1017 |
|
_t = _t->getNextSibling(); |
1018 |
< |
_t = __t59; |
1018 |
> |
_t = __t77; |
1019 |
|
_t = _t->getNextSibling(); |
1020 |
< |
#line 214 "MDTreeParser.g" |
1020 |
> |
#line 252 "MDTreeParser.g" |
1021 |
|
|
1022 |
|
blockStack.top()->validate(); |
1023 |
|
blockStack.pop(); |
1024 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
1025 |
|
currMoleculeStamp->addFragmentStamp(currFragmentStamp); |
1026 |
|
|
1027 |
< |
#line 827 "MDTreeParser.cpp" |
1027 |
> |
#line 1028 "MDTreeParser.cpp" |
1028 |
|
} |
1029 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1030 |
|
reportError(ex); |
1035 |
|
} |
1036 |
|
|
1037 |
|
void MDTreeParser::atomstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1038 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1039 |
< |
#line 101 "MDTreeParser.g" |
1038 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1039 |
> |
#line 120 "MDTreeParser.g" |
1040 |
|
|
1041 |
< |
vector<double> dvec; |
1041 |
> |
vector<RealType> dvec; |
1042 |
|
AtomStamp* currAtomStamp = static_cast<AtomStamp*>(blockStack.top()); |
1043 |
|
|
1044 |
|
|
1045 |
< |
#line 845 "MDTreeParser.cpp" |
1045 |
> |
#line 1046 "MDTreeParser.cpp" |
1046 |
|
|
1047 |
|
try { // for error handling |
1048 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1056 |
|
} |
1057 |
|
case POSITION: |
1058 |
|
{ |
1059 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t26 = _t; |
1060 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; |
1059 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t38 = _t; |
1060 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; |
1061 |
|
match(_t,POSITION); |
1062 |
|
_t = _t->getFirstChild(); |
1063 |
|
dvec=doubleNumberTuple(_t); |
1064 |
|
_t = _retTree; |
1065 |
< |
_t = __t26; |
1065 |
> |
_t = __t38; |
1066 |
|
_t = _t->getNextSibling(); |
1067 |
< |
#line 108 "MDTreeParser.g" |
1067 |
> |
#line 127 "MDTreeParser.g" |
1068 |
|
currAtomStamp->setPosition(dvec); |
1069 |
< |
#line 869 "MDTreeParser.cpp" |
1069 |
> |
#line 1070 "MDTreeParser.cpp" |
1070 |
|
break; |
1071 |
|
} |
1072 |
|
case ORIENTATION: |
1073 |
|
{ |
1074 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t27 = _t; |
1075 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; |
1074 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; |
1075 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; |
1076 |
|
match(_t,ORIENTATION); |
1077 |
|
_t = _t->getFirstChild(); |
1078 |
|
dvec=doubleNumberTuple(_t); |
1079 |
|
_t = _retTree; |
1080 |
< |
_t = __t27; |
1080 |
> |
_t = __t39; |
1081 |
|
_t = _t->getNextSibling(); |
1082 |
< |
#line 109 "MDTreeParser.g" |
1082 |
> |
#line 128 "MDTreeParser.g" |
1083 |
|
currAtomStamp->setOrientation(dvec); |
1084 |
< |
#line 884 "MDTreeParser.cpp" |
1084 |
> |
#line 1085 "MDTreeParser.cpp" |
1085 |
|
break; |
1086 |
|
} |
1087 |
|
default: |
1098 |
|
_retTree = _t; |
1099 |
|
} |
1100 |
|
|
1101 |
< |
vector<double> MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1102 |
< |
#line 227 "MDTreeParser.g" |
1103 |
< |
vector<double> dvec; |
1104 |
< |
#line 904 "MDTreeParser.cpp" |
1105 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1106 |
< |
#line 227 "MDTreeParser.g" |
1101 |
> |
vector<RealType> MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1102 |
> |
#line 265 "MDTreeParser.g" |
1103 |
> |
vector<RealType> dvec; |
1104 |
> |
#line 1105 "MDTreeParser.cpp" |
1105 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1106 |
> |
#line 265 "MDTreeParser.g" |
1107 |
|
|
1108 |
< |
double dval; |
1108 |
> |
RealType dval; |
1109 |
|
|
1110 |
< |
#line 910 "MDTreeParser.cpp" |
1110 |
> |
#line 1111 "MDTreeParser.cpp" |
1111 |
|
|
1112 |
|
try { // for error handling |
1113 |
|
{ // ( ... )+ |
1114 |
< |
int _cnt65=0; |
1114 |
> |
int _cnt83=0; |
1115 |
|
for (;;) { |
1116 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1117 |
|
_t = ASTNULL; |
1118 |
|
if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { |
1119 |
|
dval=doubleNumber(_t); |
1120 |
|
_t = _retTree; |
1121 |
< |
#line 231 "MDTreeParser.g" |
1121 |
> |
#line 269 "MDTreeParser.g" |
1122 |
|
dvec.push_back(dval); |
1123 |
< |
#line 923 "MDTreeParser.cpp" |
1123 |
> |
#line 1124 "MDTreeParser.cpp" |
1124 |
|
} |
1125 |
|
else { |
1126 |
< |
if ( _cnt65>=1 ) { goto _loop65; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
1126 |
> |
if ( _cnt83>=1 ) { goto _loop83; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
1127 |
|
} |
1128 |
|
|
1129 |
< |
_cnt65++; |
1129 |
> |
_cnt83++; |
1130 |
|
} |
1131 |
< |
_loop65:; |
1131 |
> |
_loop83:; |
1132 |
|
} // ( ... )+ |
1133 |
|
} |
1134 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1141 |
|
} |
1142 |
|
|
1143 |
|
void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1144 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1145 |
< |
#line 122 "MDTreeParser.g" |
1144 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1145 |
> |
#line 141 "MDTreeParser.g" |
1146 |
|
|
1147 |
|
vector<int> ivec; |
1148 |
|
BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); |
1149 |
|
|
1150 |
< |
#line 950 "MDTreeParser.cpp" |
1150 |
> |
#line 1151 "MDTreeParser.cpp" |
1151 |
|
|
1152 |
|
try { // for error handling |
1153 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1161 |
|
} |
1162 |
|
case MEMBERS: |
1163 |
|
{ |
1164 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t33 = _t; |
1165 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; |
1164 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; |
1165 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; |
1166 |
|
match(_t,MEMBERS); |
1167 |
|
_t = _t->getFirstChild(); |
1168 |
|
ivec=inttuple(_t); |
1169 |
|
_t = _retTree; |
1170 |
< |
_t = __t33; |
1170 |
> |
_t = __t45; |
1171 |
|
_t = _t->getNextSibling(); |
1172 |
< |
#line 128 "MDTreeParser.g" |
1172 |
> |
#line 147 "MDTreeParser.g" |
1173 |
|
currBondStamp->setMembers(ivec); |
1174 |
< |
#line 974 "MDTreeParser.cpp" |
1174 |
> |
#line 1175 "MDTreeParser.cpp" |
1175 |
|
break; |
1176 |
|
} |
1177 |
|
default: |
1189 |
|
} |
1190 |
|
|
1191 |
|
vector<int> MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1192 |
< |
#line 234 "MDTreeParser.g" |
1192 |
> |
#line 272 "MDTreeParser.g" |
1193 |
|
vector<int> ivec; |
1194 |
< |
#line 994 "MDTreeParser.cpp" |
1195 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1196 |
< |
#line 234 "MDTreeParser.g" |
1194 |
> |
#line 1195 "MDTreeParser.cpp" |
1195 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1196 |
> |
#line 272 "MDTreeParser.g" |
1197 |
|
|
1198 |
|
int ival; |
1199 |
|
|
1200 |
< |
#line 1000 "MDTreeParser.cpp" |
1200 |
> |
#line 1201 "MDTreeParser.cpp" |
1201 |
|
|
1202 |
|
try { // for error handling |
1203 |
|
{ // ( ... )+ |
1204 |
< |
int _cnt68=0; |
1204 |
> |
int _cnt86=0; |
1205 |
|
for (;;) { |
1206 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1207 |
|
_t = ASTNULL; |
1208 |
|
if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { |
1209 |
|
ival=intConst(_t); |
1210 |
|
_t = _retTree; |
1211 |
< |
#line 238 "MDTreeParser.g" |
1211 |
> |
#line 276 "MDTreeParser.g" |
1212 |
|
ivec.push_back(ival); |
1213 |
< |
#line 1013 "MDTreeParser.cpp" |
1213 |
> |
#line 1214 "MDTreeParser.cpp" |
1214 |
|
} |
1215 |
|
else { |
1216 |
< |
if ( _cnt68>=1 ) { goto _loop68; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
1216 |
> |
if ( _cnt86>=1 ) { goto _loop86; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
1217 |
|
} |
1218 |
|
|
1219 |
< |
_cnt68++; |
1219 |
> |
_cnt86++; |
1220 |
|
} |
1221 |
< |
_loop68:; |
1221 |
> |
_loop86:; |
1222 |
|
} // ( ... )+ |
1223 |
|
} |
1224 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1231 |
|
} |
1232 |
|
|
1233 |
|
void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1234 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1235 |
< |
#line 141 "MDTreeParser.g" |
1234 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1235 |
> |
#line 160 "MDTreeParser.g" |
1236 |
|
|
1237 |
|
vector<int> ivec; |
1238 |
|
BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); |
1239 |
|
|
1240 |
< |
#line 1040 "MDTreeParser.cpp" |
1240 |
> |
#line 1241 "MDTreeParser.cpp" |
1241 |
|
|
1242 |
|
try { // for error handling |
1243 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1251 |
|
} |
1252 |
|
case MEMBERS: |
1253 |
|
{ |
1254 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; |
1255 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; |
1254 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; |
1255 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; |
1256 |
|
match(_t,MEMBERS); |
1257 |
|
_t = _t->getFirstChild(); |
1258 |
|
ivec=inttuple(_t); |
1259 |
|
_t = _retTree; |
1260 |
< |
_t = __t39; |
1260 |
> |
_t = __t51; |
1261 |
|
_t = _t->getNextSibling(); |
1262 |
< |
#line 147 "MDTreeParser.g" |
1262 |
> |
#line 166 "MDTreeParser.g" |
1263 |
|
currBendStamp->setMembers(ivec); |
1264 |
< |
#line 1064 "MDTreeParser.cpp" |
1264 |
> |
#line 1265 "MDTreeParser.cpp" |
1265 |
|
break; |
1266 |
|
} |
1267 |
|
default: |
1279 |
|
} |
1280 |
|
|
1281 |
|
void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1282 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1283 |
< |
#line 160 "MDTreeParser.g" |
1282 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1283 |
> |
#line 179 "MDTreeParser.g" |
1284 |
|
|
1285 |
|
vector<int> ivec; |
1286 |
|
TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); |
1287 |
|
|
1288 |
< |
#line 1088 "MDTreeParser.cpp" |
1288 |
> |
#line 1289 "MDTreeParser.cpp" |
1289 |
|
|
1290 |
|
try { // for error handling |
1291 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1299 |
|
} |
1300 |
|
case MEMBERS: |
1301 |
|
{ |
1302 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; |
1303 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; |
1302 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; |
1303 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; |
1304 |
|
match(_t,MEMBERS); |
1305 |
|
_t = _t->getFirstChild(); |
1306 |
|
ivec=inttuple(_t); |
1307 |
|
_t = _retTree; |
1308 |
< |
_t = __t45; |
1308 |
> |
_t = __t57; |
1309 |
|
_t = _t->getNextSibling(); |
1310 |
< |
#line 166 "MDTreeParser.g" |
1310 |
> |
#line 185 "MDTreeParser.g" |
1311 |
|
currTorsionStamp->setMembers(ivec); |
1312 |
< |
#line 1112 "MDTreeParser.cpp" |
1312 |
> |
#line 1313 "MDTreeParser.cpp" |
1313 |
|
break; |
1314 |
|
} |
1315 |
|
default: |
1326 |
|
_retTree = _t; |
1327 |
|
} |
1328 |
|
|
1329 |
+ |
void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1330 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1331 |
+ |
#line 198 "MDTreeParser.g" |
1332 |
+ |
|
1333 |
+ |
int icent; |
1334 |
+ |
InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); |
1335 |
+ |
|
1336 |
+ |
#line 1337 "MDTreeParser.cpp" |
1337 |
+ |
|
1338 |
+ |
try { // for error handling |
1339 |
+ |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1340 |
+ |
_t = ASTNULL; |
1341 |
+ |
switch ( _t->getType()) { |
1342 |
+ |
case ASSIGNEQUAL: |
1343 |
+ |
{ |
1344 |
+ |
assignment(_t); |
1345 |
+ |
_t = _retTree; |
1346 |
+ |
break; |
1347 |
+ |
} |
1348 |
+ |
case CENTER: |
1349 |
+ |
{ |
1350 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; |
1351 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; |
1352 |
+ |
match(_t,CENTER); |
1353 |
+ |
_t = _t->getFirstChild(); |
1354 |
+ |
icent=intConst(_t); |
1355 |
+ |
_t = _retTree; |
1356 |
+ |
_t = __t63; |
1357 |
+ |
_t = _t->getNextSibling(); |
1358 |
+ |
#line 204 "MDTreeParser.g" |
1359 |
+ |
currInversionStamp->setCenter(icent); |
1360 |
+ |
#line 1361 "MDTreeParser.cpp" |
1361 |
+ |
break; |
1362 |
+ |
} |
1363 |
+ |
default: |
1364 |
+ |
{ |
1365 |
+ |
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1366 |
+ |
} |
1367 |
+ |
} |
1368 |
+ |
} |
1369 |
+ |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1370 |
+ |
reportError(ex); |
1371 |
+ |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1372 |
+ |
_t = _t->getNextSibling(); |
1373 |
+ |
} |
1374 |
+ |
_retTree = _t; |
1375 |
+ |
} |
1376 |
+ |
|
1377 |
|
void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1378 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1379 |
< |
#line 183 "MDTreeParser.g" |
1378 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1379 |
> |
#line 221 "MDTreeParser.g" |
1380 |
|
|
1381 |
|
vector<int> ivec; |
1382 |
|
RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); |
1383 |
|
|
1384 |
< |
#line 1136 "MDTreeParser.cpp" |
1384 |
> |
#line 1385 "MDTreeParser.cpp" |
1385 |
|
|
1386 |
|
try { // for error handling |
1387 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1395 |
|
} |
1396 |
|
case MEMBERS: |
1397 |
|
{ |
1398 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; |
1399 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; |
1398 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; |
1399 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp36_AST_in = _t; |
1400 |
|
match(_t,MEMBERS); |
1401 |
|
_t = _t->getFirstChild(); |
1402 |
|
ivec=inttuple(_t); |
1403 |
|
_t = _retTree; |
1404 |
< |
_t = __t51; |
1404 |
> |
_t = __t69; |
1405 |
|
_t = _t->getNextSibling(); |
1406 |
< |
#line 189 "MDTreeParser.g" |
1406 |
> |
#line 227 "MDTreeParser.g" |
1407 |
|
currRigidBodyStamp->setMembers(ivec); |
1408 |
< |
#line 1160 "MDTreeParser.cpp" |
1408 |
> |
#line 1409 "MDTreeParser.cpp" |
1409 |
|
break; |
1410 |
|
} |
1411 |
|
default: |
1423 |
|
} |
1424 |
|
|
1425 |
|
void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1426 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1427 |
< |
#line 202 "MDTreeParser.g" |
1426 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1427 |
> |
#line 240 "MDTreeParser.g" |
1428 |
|
|
1429 |
|
vector<int> ivec; |
1430 |
|
CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); |
1431 |
|
|
1432 |
< |
#line 1184 "MDTreeParser.cpp" |
1432 |
> |
#line 1433 "MDTreeParser.cpp" |
1433 |
|
|
1434 |
|
try { // for error handling |
1435 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1443 |
|
} |
1444 |
|
case MEMBERS: |
1445 |
|
{ |
1446 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; |
1447 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; |
1446 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; |
1447 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp37_AST_in = _t; |
1448 |
|
match(_t,MEMBERS); |
1449 |
|
_t = _t->getFirstChild(); |
1450 |
|
ivec=inttuple(_t); |
1451 |
|
_t = _retTree; |
1452 |
< |
_t = __t57; |
1452 |
> |
_t = __t75; |
1453 |
|
_t = _t->getNextSibling(); |
1454 |
< |
#line 208 "MDTreeParser.g" |
1454 |
> |
#line 246 "MDTreeParser.g" |
1455 |
|
currCutoffGroupStamp->setMembers(ivec); |
1456 |
< |
#line 1208 "MDTreeParser.cpp" |
1456 |
> |
#line 1457 "MDTreeParser.cpp" |
1457 |
|
break; |
1458 |
|
} |
1459 |
|
default: |
1471 |
|
} |
1472 |
|
|
1473 |
|
void MDTreeParser::fragmentstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1474 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST fragmentstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1474 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST fragmentstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1475 |
|
|
1476 |
|
try { // for error handling |
1477 |
|
assignment(_t); |
1485 |
|
_retTree = _t; |
1486 |
|
} |
1487 |
|
|
1488 |
< |
double MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1489 |
< |
#line 248 "MDTreeParser.g" |
1490 |
< |
double dval; |
1491 |
< |
#line 1243 "MDTreeParser.cpp" |
1492 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1488 |
> |
RealType MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1489 |
> |
#line 286 "MDTreeParser.g" |
1490 |
> |
RealType dval; |
1491 |
> |
#line 1492 "MDTreeParser.cpp" |
1492 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1493 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; |
1494 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; |
1495 |
|
|
1503 |
|
ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1504 |
|
intConst(_t); |
1505 |
|
_t = _retTree; |
1506 |
< |
#line 250 "MDTreeParser.g" |
1507 |
< |
dval = lexi_cast<double>(ic->getText()); |
1508 |
< |
#line 1260 "MDTreeParser.cpp" |
1506 |
> |
#line 288 "MDTreeParser.g" |
1507 |
> |
dval = lexi_cast<RealType>(ic->getText()); |
1508 |
> |
#line 1509 "MDTreeParser.cpp" |
1509 |
|
break; |
1510 |
|
} |
1511 |
|
case NUM_FLOAT: |
1514 |
|
fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1515 |
|
floatConst(_t); |
1516 |
|
_t = _retTree; |
1517 |
< |
#line 251 "MDTreeParser.g" |
1518 |
< |
dval = lexi_cast<double>(fc->getText()); |
1519 |
< |
#line 1271 "MDTreeParser.cpp" |
1517 |
> |
#line 289 "MDTreeParser.g" |
1518 |
> |
dval = lexi_cast<RealType>(fc->getText()); |
1519 |
> |
#line 1520 "MDTreeParser.cpp" |
1520 |
|
break; |
1521 |
|
} |
1522 |
|
default: |
1545 |
|
"\"component\"", |
1546 |
|
"\"molecule\"", |
1547 |
|
"\"zconstraint\"", |
1548 |
+ |
"\"restraint\"", |
1549 |
|
"\"atom\"", |
1550 |
|
"\"bond\"", |
1551 |
|
"\"bend\"", |
1552 |
|
"\"torsion\"", |
1553 |
+ |
"\"inversion\"", |
1554 |
|
"\"rigidBody\"", |
1555 |
|
"\"cutoffGroup\"", |
1556 |
|
"\"fragment\"", |
1557 |
|
"\"members\"", |
1558 |
+ |
"\"center\"", |
1559 |
|
"\"position\"", |
1560 |
|
"\"orientation\"", |
1561 |
+ |
"\"flucQ\"", |
1562 |
+ |
"\"RNEMD\"", |
1563 |
|
"ENDBLOCK", |
1564 |
|
"ID", |
1565 |
|
"ASSIGNEQUAL", |
1597 |
|
0 |
1598 |
|
}; |
1599 |
|
|
1600 |
< |
const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 524400UL, 0UL, 0UL, 0UL }; |
1601 |
< |
// "component" "molecule" "zconstraint" ASSIGNEQUAL |
1600 |
> |
const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 19923184UL, 0UL, 0UL, 0UL }; |
1601 |
> |
// "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" ASSIGNEQUAL |
1602 |
|
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); |
1603 |
< |
const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 540544UL, 0UL, 0UL, 0UL }; |
1604 |
< |
// "atom" "bond" "bend" "torsion" "rigidBody" "cutoffGroup" "fragment" |
1605 |
< |
// ASSIGNEQUAL |
1603 |
> |
const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 16842496UL, 0UL, 0UL, 0UL }; |
1604 |
> |
// "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" |
1605 |
> |
// "fragment" ASSIGNEQUAL |
1606 |
|
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); |
1607 |
|
|
1608 |
|
|