Added a double dot tensor contraction.
updated copyright notices
Completing the Fortran removal project. Fixes for compilation with clang / llvm, debugging, removing code that we'd never used.
Creating busticated version of OpenMD
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Added new restraint infrastructure Added MolecularRestraints Added ObjectRestraints Added RestraintStamp Updated thermodynamic integration to use ObjectRestraints Added Quaternion mathematics for twist swing decompositions Significantly updated RestWriter and RestReader to use dump-like files Added selections for x, y, and z coordinates of atoms Removed monolithic Restraints class Fixed a few bugs in gradients of Euler angles in DirectionalAtom and RigidBody Added some rotational capabilities to prinicpalAxisCalculator
Adding single precision capabilities to c++ side
LangevinDynamics in progress
Adding Hydrodynamics Module
adding transpose into SquareMatrix3; fix a bug in AtomStamp where orientation is not set correctly.
using epsilon instead of 0.0 to avoid divergence in rotation matrix to quaternion transformation
fix a bug in convert rotation matrix to quaternion
xemacs has been drafted to perform our indentation services
fix a bug in converting rotation matrix to quaternion
fix compilation problem for g++ 3.4
merging new_design branch into OOPSE-2.0
add getArray function to RectMatrix and Vector classes
Snapshot and SnapshotManager in progress
Math library pass the unit test
except diagonalize(), all of functions in math library pass the test
more tests on math library
fix some bugs in Quaternion class
math library in progress
math library in progress
refactory vector and matrix classes
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