| 6 |
|
* redistribute this software in source and binary code form, provided |
| 7 |
|
* that the following conditions are met: |
| 8 |
|
* |
| 9 |
< |
* 1. Acknowledgement of the program authors must be made in any |
| 10 |
< |
* publication of scientific results based in part on use of the |
| 11 |
< |
* program. An acceptable form of acknowledgement is citation of |
| 12 |
< |
* the article in which the program was described (Matthew |
| 13 |
< |
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
| 14 |
< |
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
| 15 |
< |
* Parallel Simulation Engine for Molecular Dynamics," |
| 16 |
< |
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
| 17 |
< |
* |
| 18 |
< |
* 2. Redistributions of source code must retain the above copyright |
| 9 |
> |
* 1. Redistributions of source code must retain the above copyright |
| 10 |
|
* notice, this list of conditions and the following disclaimer. |
| 11 |
|
* |
| 12 |
< |
* 3. Redistributions in binary form must reproduce the above copyright |
| 12 |
> |
* 2. Redistributions in binary form must reproduce the above copyright |
| 13 |
|
* notice, this list of conditions and the following disclaimer in the |
| 14 |
|
* documentation and/or other materials provided with the |
| 15 |
|
* distribution. |
| 28 |
|
* arising out of the use of or inability to use software, even if the |
| 29 |
|
* University of Notre Dame has been advised of the possibility of |
| 30 |
|
* such damages. |
| 31 |
+ |
* |
| 32 |
+ |
* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
| 33 |
+ |
* research, please cite the appropriate papers when you publish your |
| 34 |
+ |
* work. Good starting points are: |
| 35 |
+ |
* |
| 36 |
+ |
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
| 37 |
+ |
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
| 38 |
+ |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
| 39 |
+ |
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
| 40 |
+ |
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
| 41 |
|
*/ |
| 42 |
|
|
| 43 |
|
#include <algorithm> |
| 47 |
|
|
| 48 |
|
#include "io/ZConsWriter.hpp" |
| 49 |
|
#include "utils/simError.h" |
| 50 |
+ |
#ifdef IS_MPI |
| 51 |
+ |
#include <mpi.h> |
| 52 |
+ |
#endif |
| 53 |
|
|
| 54 |
< |
|
| 51 |
< |
namespace oopse { |
| 54 |
> |
namespace OpenMD { |
| 55 |
|
ZConsWriter::ZConsWriter(SimInfo* info, const std::string& filename) : info_(info) { |
| 56 |
|
//use master - slave mode, only master node writes to disk |
| 57 |
|
#ifdef IS_MPI |
| 113 |
|
|
| 114 |
|
MPI_Status ierr; |
| 115 |
|
int zmolIndex; |
| 116 |
< |
double data[3]; |
| 116 |
> |
RealType data[3]; |
| 117 |
|
|
| 118 |
|
if (masterNode == 0) { |
| 119 |
|
|
| 133 |
|
} else { |
| 134 |
|
for(int k =0 ; k < nFixedZmolsInProc[i]; ++k) { |
| 135 |
|
MPI_Recv(&zmolIndex, 1, MPI_INT, i, 0, MPI_COMM_WORLD,&ierr); |
| 136 |
< |
MPI_Recv(data, 3, MPI_DOUBLE, i, 0, MPI_COMM_WORLD,&ierr); |
| 136 |
> |
MPI_Recv(data, 3, MPI_REALTYPE, i, 0, MPI_COMM_WORLD,&ierr); |
| 137 |
|
tmpData.zmolIndex = zmolIndex; |
| 138 |
|
tmpData.zforce= data[0]; |
| 139 |
|
tmpData.zpos = data[1]; |
| 162 |
|
data[1] = j->zpos; |
| 163 |
|
data[2] = j->param.zTargetPos; |
| 164 |
|
MPI_Send(&zmolIndex, 1, MPI_INT, masterNode, 0, MPI_COMM_WORLD); |
| 165 |
< |
MPI_Send(data, 3, MPI_DOUBLE, masterNode, 0, MPI_COMM_WORLD); |
| 165 |
> |
MPI_Send(data, 3, MPI_REALTYPE, masterNode, 0, MPI_COMM_WORLD); |
| 166 |
|
|
| 167 |
|
} |
| 168 |
|
} |
