Fixed a bunch of stylistic and performance issues discovered via cppcheck.
Fixed a widespread typo in the license
Merging some of the trunk changes back to the development branch, cleaning up a datastorage bug
updated copyright notices
Creating busticated version of OpenMD
Adding property set to svn entries
Fixed bugs in Restraint, refactored RestReader and RestWriter
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Added new restraint infrastructure Added MolecularRestraints Added ObjectRestraints Added RestraintStamp Updated thermodynamic integration to use ObjectRestraints Added Quaternion mathematics for twist swing decompositions Significantly updated RestWriter and RestReader to use dump-like files Added selections for x, y, and z coordinates of atoms Removed monolithic Restraints class Fixed a few bugs in gradients of Euler angles in DirectionalAtom and RigidBody Added some rotational capabilities to prinicpalAxisCalculator
more efficient file reading for thermodynamic integration, and fixed some formatting
Adding single precision capabilities to c++ side
xemacs has been drafted to perform our indentation services
First commit of the new restraints code
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