98 |
|
DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); |
99 |
|
DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
100 |
|
DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
101 |
< |
DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
101 |
> |
DefineOptionalParameter(HydroPropFile, "HydroPropFile"); |
102 |
> |
DefineOptionalParameter(Viscosity, "viscosity"); |
103 |
> |
DefineOptionalParameter(BeadSize, "beadSize"); |
104 |
> |
|
105 |
|
DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
106 |
|
DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); |
107 |
|
DefineOptionalParameterWithDefaultValue(UseIntialExtendedSystemState, "useInitialExtendedSystemState", false); |
133 |
|
|
134 |
|
CheckParameter(ForceField, isNotEmpty()); |
135 |
|
CheckParameter(TargetTemp, isPositive()); |
136 |
< |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT") ); |
136 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT") || isEqualIgnoreCase("LANGEVINDYNAMICS") ); |
137 |
|
CheckParameter(Dt, isPositive()); |
138 |
|
CheckParameter(RunTime, isPositive()); |
139 |
|
CheckParameter(InitialConfig, isNotEmpty()); |
174 |
|
CheckParameter(CutoffPolicy, isEqualIgnoreCase("MIX") || isEqualIgnoreCase("MAX") || isEqualIgnoreCase("TRADITIONAL")); |
175 |
|
CheckParameter(SwitchingFunctionType, isEqualIgnoreCase("CUBIC") || isEqualIgnoreCase("FIFTH_ORDER_POLYNOMIAL")); |
176 |
|
//CheckParameter(StatFileFormat,); |
174 |
– |
//CheckParameter(MixingRule,); |
177 |
|
CheckParameter(OrthoBoxTolerance, isPositive()); |
178 |
|
CheckParameter(ThermIntDistSpringConst, isPositive()); |
179 |
|
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
180 |
|
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
181 |
|
CheckParameter(DampingAlpha,isNonNegative()); |
182 |
|
CheckParameter(SkinThickness, isPositive()); |
183 |
< |
|
183 |
> |
CheckParameter(Viscosity,isNonNegative()); |
184 |
> |
CheckParameter(BeadSize,isPositive()); |
185 |
|
for(std::vector<Component*>::iterator i = components_.begin(); i != components_.end(); ++i) { |
186 |
|
if (!(*i)->findMoleculeStamp(moleculeStamps_)) { |
187 |
|
std::ostringstream oss; |