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#include "io/mpiBASS.h" |
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#endif // is_mpi |
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#include "io/ParamConstraint.hpp" |
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#define DefineParameter(NAME,KEYWORD) \ |
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NAME.setKeyword(KEYWORD); \ |
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NAME.setKeyword(KEYWORD); NAME.setOptional(true); NAME.setDefaultValue(DEFAULTVALUE); \ |
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parameters_.insert(std::make_pair(std::string(KEYWORD), &NAME)); |
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#define CheckParameter(NAME, CONSTRAINT) \ |
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if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) { sprintf(painCave.errMsg,"Error in checking %s : should be %s\n",NAME.getKeyword().c_str(),(CONSTRAINT).getConstraintDescription().c_str()); painCave.isFatal = 1; painCave.severity = OOPSE_ERROR; simError();} } |
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Globals::Globals(){ |
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DefineParameter(ForceField, "forceField") |
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DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); |
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DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
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DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
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DefineOptionalParameter(StatFileFormat, "statFileFormat"); |
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DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
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DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
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DefineOptionalParameterWithDefaultValue(OrthoBoxTolerance, "orthoBoxTolerance", 1E-6); |
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DefineOptionalParameterWithDefaultValue(UseSolidThermInt, "useSolidThermInt", false); |
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DefineOptionalParameterWithDefaultValue(UseLiquidThermInt, "useLiquidThermInt", false); |
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DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); |
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DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); |
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DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); |
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DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 1.5); |
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DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
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DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
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DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
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} |
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int Globals::globalAssign( event* the_event ){ |
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char errorMessage[65535]; |
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int key; |
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int token; |
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interface_assign_type the_type = the_event->evt.asmt.asmt_type; |
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char* lhs = the_event->evt.asmt.lhs; |
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std::string keyword(lhs); |
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bool result; |
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bool result = false; |
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/**@todo fix memory leak */ |
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ParamMap::iterator i =parameters_.find(keyword); |
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if (i != parameters_.end()) { |
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if( the_type == STRING ){ |
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result = i->second->setData(std::string(the_event->evt.asmt.rhs.sval)); |
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if (!result ) { |
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sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a string.\n", keyword.c_str() ); |
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sprintf(errorMessage, "Error in parsing %s: expect %s, but get a string \"%s\".\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.sval); |
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the_event->err_msg = strdup(errorMessage); |
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} |
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} else if( the_type == DOUBLE ){ |
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result = i->second->setData(the_event->evt.asmt.rhs.dval); |
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if (!result ) |
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sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a double.\n", keyword.c_str() ); |
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sprintf(errorMessage, "Error in parsing %s: expect %s, but get a double %f.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.dval ); |
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the_event->err_msg = strdup(errorMessage); |
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} |
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else if (the_type == INT ){ |
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result = i->second->setData(the_event->evt.asmt.rhs.ival); |
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if (!result ) |
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sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be an int.\n", keyword.c_str() ); |
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sprintf(errorMessage, "Error in parsing %s: expect %s, but get an int %d.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.ival ); |
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the_event->err_msg = strdup(errorMessage); |
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} else { |
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sprintf(errorMessage, "Internal error of parser\n"); |
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the_event->err_msg = strdup(errorMessage); |
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} |
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} else { |
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sprintf(errorMessage, "%s is an unrecognized keyword\n", keyword.c_str() ); |
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the_event->err_msg = strdup(errorMessage); |
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} |
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if (keyword == "nComponents" && getNComponents() > 0) { |
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} |
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} |
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CheckParameter(ForceField, isNotEmpty()); |
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CheckParameter(NComponents,isPositive()); |
341 |
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CheckParameter(TargetTemp, isPositive()); |
342 |
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CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || |
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isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))|| |
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isEqualIgnoreCase(std::string("NPTxyz")) ); |
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CheckParameter(Dt, isPositive()); |
346 |
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CheckParameter(RunTime, isPositive()); |
347 |
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CheckParameter(InitialConfig, isNotEmpty()); |
348 |
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CheckParameter(FinalConfig, isNotEmpty()); |
349 |
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CheckParameter(NMol, isPositive()); |
350 |
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CheckParameter(Density, isPositive()); |
351 |
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CheckParameter(Box, isPositive()); |
352 |
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CheckParameter(BoxX, isPositive()); |
353 |
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CheckParameter(BoxY, isPositive()); |
354 |
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CheckParameter(BoxZ, isPositive()); |
355 |
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CheckParameter(SampleTime, isNonNegative()); |
356 |
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CheckParameter(ResetTime, isNonNegative()); |
357 |
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CheckParameter(StatusTime, isNonNegative()); |
358 |
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CheckParameter(CutoffRadius, isPositive()); |
359 |
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CheckParameter(SwitchingRadius, isNonNegative()); |
360 |
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CheckParameter(Dielectric, isPositive()); |
361 |
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CheckParameter(ThermalTime, isNonNegative()); |
362 |
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CheckParameter(TargetPressure, isPositive()); |
363 |
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CheckParameter(TauThermostat, isPositive()); |
364 |
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CheckParameter(TauBarostat, isPositive()); |
365 |
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CheckParameter(ZconsTime, isPositive()); |
366 |
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CheckParameter(NZconstraints, isPositive()); |
367 |
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CheckParameter(ZconsTol, isPositive()); |
368 |
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//CheckParameter(ZconsForcePolicy,); |
369 |
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CheckParameter(Seed, isPositive()); |
370 |
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CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
371 |
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CheckParameter(MinimizerMaxIter, isPositive()); |
372 |
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CheckParameter(MinimizerWriteFrq, isPositive()); |
373 |
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CheckParameter(MinimizerStepSize, isPositive()); |
374 |
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CheckParameter(MinimizerFTol, isPositive()); |
375 |
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CheckParameter(MinimizerGTol, isPositive()); |
376 |
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CheckParameter(MinimizerLSTol, isPositive()); |
377 |
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CheckParameter(MinimizerLSMaxIter, isPositive()); |
378 |
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CheckParameter(ZconsGap, isPositive()); |
379 |
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CheckParameter(ZconsFixtime, isPositive()); |
380 |
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CheckParameter(ThermodynamicIntegrationLambda, isPositive()); |
381 |
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CheckParameter(ThermodynamicIntegrationK, isPositive()); |
382 |
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CheckParameter(ForceFieldVariant, isNotEmpty()); |
383 |
+ |
CheckParameter(ForceFieldFileName, isNotEmpty()); |
384 |
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CheckParameter(ThermIntDistSpringConst, isPositive()); |
385 |
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CheckParameter(ThermIntThetaSpringConst, isPositive()); |
386 |
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CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
387 |
+ |
CheckParameter(SurfaceTension, isPositive()); |
388 |
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CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("UNDAMPED_WOLF")) || isEqualIgnoreCase(std::string("DAMPED_WOLF")) || isEqualIgnoreCase(std::string("REACTION_FIELD")) ); |
389 |
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CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
390 |
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//CheckParameter(StatFileFormat,); |
391 |
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//CheckParameter(MixingRule,); |
392 |
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CheckParameter(OrthoBoxTolerance, isPositive()); |
393 |
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CheckParameter(ThermIntDistSpringConst, isPositive()); |
394 |
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CheckParameter(ThermIntThetaSpringConst, isPositive()); |
395 |
+ |
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
396 |
+ |
CheckParameter(DampingAlpha,isPositive()); |
397 |
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CheckParameter(SkinThickness, isPositive()); |
398 |
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//@todo memory leak |
400 |
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if( have_err ) |
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return strdup( err.c_str() ); |