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/* |
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* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
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* |
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* The University of Notre Dame grants you ("Licensee") a |
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* non-exclusive, royalty free, license to use, modify and |
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* redistribute this software in source and binary code form, provided |
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* that the following conditions are met: |
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* |
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* 1. Acknowledgement of the program authors must be made in any |
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* publication of scientific results based in part on use of the |
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* program. An acceptable form of acknowledgement is citation of |
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* the article in which the program was described (Matthew |
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* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
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* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
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* Parallel Simulation Engine for Molecular Dynamics," |
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* J. Comput. Chem. 26, pp. 252-271 (2005)) |
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* |
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* 2. Redistributions of source code must retain the above copyright |
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* notice, this list of conditions and the following disclaimer. |
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* |
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* 3. Redistributions in binary form must reproduce the above copyright |
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* notice, this list of conditions and the following disclaimer in the |
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* documentation and/or other materials provided with the |
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* distribution. |
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* |
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* This software is provided "AS IS," without a warranty of any |
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* kind. All express or implied conditions, representations and |
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* warranties, including any implied warranty of merchantability, |
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* fitness for a particular purpose or non-infringement, are hereby |
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* excluded. The University of Notre Dame and its licensors shall not |
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* be liable for any damages suffered by licensee as a result of |
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* using, modifying or distributing the software or its |
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* derivatives. In no event will the University of Notre Dame or its |
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* licensors be liable for any lost revenue, profit or data, or for |
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* direct, indirect, special, consequential, incidental or punitive |
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* damages, however caused and regardless of the theory of liability, |
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* arising out of the use of or inability to use software, even if the |
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* University of Notre Dame has been advised of the possibility of |
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* such damages. |
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*/ |
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|
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#include <stdlib.h> |
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#include <stdio.h> |
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#include <string.h> |
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|
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#include "io/Globals.hpp" |
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#include "utils/simError.h" |
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#ifdef IS_MPI |
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#include "io/mpiBASS.h" |
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#endif // is_mpi |
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|
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/* |
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* The following section lists all of the defined tokens for the |
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* global assignment statements. All are prefixed with a G_ to avoid |
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* stepping on any previously defined enumerations. |
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* |
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* NOTE: tokens start at 1, 0 is a resrved token number |
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*/ |
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|
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//required parameters |
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#define G_FORCEFIELD 1 |
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#define G_NCOMPONENTS 2 |
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#define G_TARGETTEMP 3 |
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#define G_ENSEMBLE 4 |
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#define G_DT 5 |
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#define G_RUNTIME 6 |
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|
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//optional parameters |
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#define G_INITIALCONFIG 7 |
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#define G_FINALCONFIG 8 |
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#define G_NMOL 9 |
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#define G_DENSITY 10 |
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#define G_BOX 11 |
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#define G_BOXX 12 |
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#define G_BOXY 13 |
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#define G_BOXZ 14 |
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#define G_SAMPLETIME 15 |
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#define G_STATUSTIME 16 |
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#define G_RCUT 17 |
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#define G_RSW 18 |
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#define G_DIELECTRIC 19 |
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#define G_TEMPSET 20 |
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#define G_THERMALTIME 21 |
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#define G_USEPBC 22 |
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#define G_MIXINGRULE 23 |
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#define G_TARGETPRESSURE 24 |
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#define G_TAUTHERMOSTAT 25 |
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#define G_TAUBAROSTAT 26 |
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#define G_ZCONSTIME 27 |
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#define G_NZCONSTRAINTS 28 |
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#define G_ZCONSTOL 29 |
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#define G_ZCONSFORCEPOLICY 30 |
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#define G_SEED 31 |
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#define G_RESETTIME 32 |
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#define G_USEINITTIME 33 |
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#define G_USEINIT_XS_STATE 34 |
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#define G_ORTHOBOXTOLERANCE 35 |
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#define G_MINIMIZER 36 |
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#define G_MIN_MAXITER 37 |
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#define G_MIN_WRITEFRQ 38 |
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#define G_MIN_STEPSIZE 39 |
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#define G_MIN_FTOL 40 |
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#define G_MIN_GTOL 41 |
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#define G_MIN_LSTOL 42 |
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#define G_MIN_LSMAXITER 43 |
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#define G_ZCONSGAP 44 |
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#define G_ZCONSFIXTIME 45 |
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#define G_ZCONSUSINGSMD 46 |
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#define G_USE_SOLID_THERM_INT 47 |
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#define G_USE_LIQUID_THERM_INT 48 |
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#define G_THERM_INT_LAMBDA 49 |
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#define G_THERM_INT_K 50 |
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#define G_FORCEFIELD_VARIANT 51 |
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#define G_FORCEFIELD_FILENAME 52 |
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#define G_THERM_INT_DIST_SPRING 53 |
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#define G_THERM_INT_THETA_SPRING 54 |
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#define G_THERM_INT_OMEGA_SPRING 55 |
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#define G_SURFACETENSION 56 |
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#define G_PRINTPRESSURETENSOR 57 |
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#define G_ELECTRO_SUM_METHOD 58 |
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#define G_DAMPING_ALPHA 59 |
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#define G_CUTOFFPOLICY 60 |
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|
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Globals::Globals(){ |
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initalize(); |
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} |
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|
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Globals::~Globals(){ |
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int i; |
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if( components != NULL ){ |
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for( i=0; i<n_components; i++ ) delete components[i]; |
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delete[] components; |
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} |
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} |
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|
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void Globals::initalize(){ |
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int i; |
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|
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components = NULL; |
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|
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command_table.insert(CommandMapType::value_type("forceField", G_FORCEFIELD)); |
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command_table.insert(CommandMapType::value_type("nComponents", G_NCOMPONENTS)); |
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command_table.insert(CommandMapType::value_type("targetTemp", G_TARGETTEMP)); |
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command_table.insert(CommandMapType::value_type("ensemble", G_ENSEMBLE)); |
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command_table.insert(CommandMapType::value_type("dt", G_DT)); |
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command_table.insert(CommandMapType::value_type("runTime", G_RUNTIME)); |
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command_table.insert(CommandMapType::value_type("initialConfig", G_INITIALCONFIG)); |
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command_table.insert(CommandMapType::value_type("finalConfig", G_FINALCONFIG)); |
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command_table.insert(CommandMapType::value_type("nMol", G_NMOL)); |
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command_table.insert(CommandMapType::value_type("density", G_DENSITY)); |
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command_table.insert(CommandMapType::value_type("box", G_BOX)); |
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command_table.insert(CommandMapType::value_type("boxX", G_BOXX)); |
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command_table.insert(CommandMapType::value_type("boxY", G_BOXY)); |
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command_table.insert(CommandMapType::value_type("boxZ", G_BOXZ)); |
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command_table.insert(CommandMapType::value_type("sampleTime", G_SAMPLETIME)); |
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command_table.insert(CommandMapType::value_type("resetTime", G_RESETTIME)); |
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command_table.insert(CommandMapType::value_type("statusTime", G_STATUSTIME)); |
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command_table.insert(CommandMapType::value_type("cutoffRadius", G_RCUT)); |
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command_table.insert(CommandMapType::value_type("switchingRadius", G_RSW)); |
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command_table.insert(CommandMapType::value_type("dielectric", G_DIELECTRIC)); |
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command_table.insert(CommandMapType::value_type("tempSet", G_TEMPSET)); |
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command_table.insert(CommandMapType::value_type("thermalTime", G_THERMALTIME)); |
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command_table.insert(CommandMapType::value_type("mixingRule", G_MIXINGRULE)); |
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command_table.insert(CommandMapType::value_type("usePeriodicBoundaryConditions", G_USEPBC)); |
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command_table.insert(CommandMapType::value_type("targetPressure", G_TARGETPRESSURE)); |
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command_table.insert(CommandMapType::value_type("tauThermostat", G_TAUTHERMOSTAT)); |
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command_table.insert(CommandMapType::value_type("tauBarostat", G_TAUBAROSTAT)); |
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command_table.insert(CommandMapType::value_type("zconsTime", G_ZCONSTIME)); |
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command_table.insert(CommandMapType::value_type("nZconstraints", G_NZCONSTRAINTS)); |
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command_table.insert(CommandMapType::value_type("zconsTol", G_ZCONSTOL)); |
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command_table.insert(CommandMapType::value_type("zconsForcePolicy", G_ZCONSFORCEPOLICY)); |
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command_table.insert(CommandMapType::value_type("seed", G_SEED)); |
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command_table.insert(CommandMapType::value_type("useInitialTime", G_USEINITTIME)); |
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command_table.insert(CommandMapType::value_type("useInitialExtendedSystemState", G_USEINIT_XS_STATE)); |
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command_table.insert(CommandMapType::value_type("orthoBoxTolerance", G_ORTHOBOXTOLERANCE)); |
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command_table.insert(CommandMapType::value_type("minimizer", G_MINIMIZER)); |
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command_table.insert(CommandMapType::value_type("minimizerMaxIter", G_MIN_MAXITER)); |
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command_table.insert(CommandMapType::value_type("minimizerWriteFrq", G_MIN_WRITEFRQ)); |
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command_table.insert(CommandMapType::value_type("minimizerStepSize", G_MIN_STEPSIZE)); |
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command_table.insert(CommandMapType::value_type("minimizerFTol", G_MIN_FTOL)); |
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command_table.insert(CommandMapType::value_type("minimizerGTol", G_MIN_GTOL)); |
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command_table.insert(CommandMapType::value_type("minimizerLSTol", G_MIN_LSTOL)); |
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command_table.insert(CommandMapType::value_type("minimizerLSMaxIter", G_MIN_LSMAXITER)); |
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command_table.insert(CommandMapType::value_type("zconsGap", G_ZCONSGAP)); |
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command_table.insert(CommandMapType::value_type("zconsFixtime", G_ZCONSFIXTIME)); |
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command_table.insert(CommandMapType::value_type("zconsUsingSMD", G_ZCONSUSINGSMD)); |
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command_table.insert(CommandMapType::value_type("useSolidThermInt", G_USE_SOLID_THERM_INT)); |
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command_table.insert(CommandMapType::value_type("useLiquidThermInt", G_USE_LIQUID_THERM_INT)); |
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command_table.insert(CommandMapType::value_type("thermodynamicIntegrationLambda", G_THERM_INT_LAMBDA)); |
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command_table.insert(CommandMapType::value_type("thermodynamicIntegrationK", G_THERM_INT_K)); |
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command_table.insert(CommandMapType::value_type("forceFieldVariant", G_FORCEFIELD_VARIANT)); |
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command_table.insert(CommandMapType::value_type("forceFieldFileName", G_FORCEFIELD_FILENAME)); |
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command_table.insert(CommandMapType::value_type("thermIntDistSpringConst", G_THERM_INT_DIST_SPRING)); |
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command_table.insert(CommandMapType::value_type("thermIntThetaSpringConst", G_THERM_INT_THETA_SPRING)); |
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command_table.insert(CommandMapType::value_type("thermIntOmegaSpringConst", G_THERM_INT_OMEGA_SPRING)); |
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command_table.insert(CommandMapType::value_type("surfaceTension", G_SURFACETENSION)); |
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command_table.insert(CommandMapType::value_type("printPressureTensor", G_PRINTPRESSURETENSOR)); |
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command_table.insert(CommandMapType::value_type("electrostaticSummationMethod", G_ELECTRO_SUM_METHOD)); |
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command_table.insert(CommandMapType::value_type("dampingAlpha", G_DAMPING_ALPHA)); |
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command_table.insert(CommandMapType::value_type("cutoffPolicy", G_CUTOFFPOLICY)); |
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|
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strcpy( mixingRule,"standard"); //default mixing rules to standard. |
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usePBC = 1; //default periodic boundry conditions to on |
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useInitTime = 0; // default to pull init time from the init file |
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useInitXSstate = 0; // default to pull the extended state from the init file |
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orthoBoxTolerance = 1E-6; |
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useSolidThermInt = 0; // default solid-state thermodynamic integration to off |
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useLiquidThermInt = 0; // default liquid thermodynamic integration to off |
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dampingAlpha = 1.5; // default damping parameter in Wolf Electrostatics |
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|
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have_force_field = 0; |
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have_n_components = 0; |
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have_target_temp = 0; |
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have_ensemble = 0; |
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have_dt = 0; |
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have_run_time = 0; |
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|
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have_initial_config = 0; |
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have_final_config = 0; |
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have_n_mol = 0; |
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have_density = 0; |
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have_box = 0; |
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have_box_x = 0; |
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have_box_y = 0; |
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have_box_y = 0; |
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have_box_z = 0; |
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have_sample_time = 0; |
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have_status_time = 0; |
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have_reset_time = 0; |
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have_thermal_time = 0; |
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have_rcut = 0; |
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have_rsw = 0; |
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have_dielectric = 0; |
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have_tempSet = 0; |
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have_target_pressure =0; |
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have_q_mass = 0; |
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have_tau_thermostat = 0; |
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have_tau_barostat = 0; |
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have_zcons_time = 0; |
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have_n_zConstraints = 0; |
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have_zConstraints = 0; |
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have_zcons_tol = 0; |
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have_zcons_gap = 0; |
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have_zcons_fixtime = 0; |
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have_zcons_using_smd = 0; |
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have_seed = 0; |
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have_minimizer = 0; |
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have_minimizer_maxiteration = 0; |
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have_minimizer_writefrq = 0; |
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have_minimizer_stepsize = 0; |
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have_minimizer_ftol = 0; |
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have_minimizer_gtol = 0; |
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have_minimizer_ls_tol = 0; |
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have_minimizer_ls_maxiteration = 0; |
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have_thermodynamic_integration_lambda = 0; |
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have_thermodynamic_integration_k = 0; |
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have_forcefield_variant = 0; |
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have_forcefield_filename = 0; |
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have_dist_spring_constant = 0; |
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have_theta_spring_constant = 0; |
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have_omega_spring_constant = 0; |
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have_surface_tension = 0; |
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have_print_pressure_tensor = 0; |
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have_electro_sum_method = 0; |
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have_damping_alpha = 0; |
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have_cutoff_policy = 0; |
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} |
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|
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int Globals::newComponent( event* the_event ){ |
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|
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current_component = new Component; |
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int index = the_event->evt.blk_index; |
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char err[200]; |
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|
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if( have_n_components && index < n_components ) |
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components[index] = current_component; |
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else{ |
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if( have_n_components ){ |
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sprintf( err, "meta-data parsing error: %d out of nComponents range", |
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index ); |
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the_event->err_msg = strdup( err ); |
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return 0; |
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} |
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else{ |
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the_event->err_msg = strdup("meta-data parsing error: nComponents not given before" |
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" first component declaration." ); |
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return 0; |
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} |
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} |
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|
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return 1; |
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} |
293 |
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|
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|
295 |
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|
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int Globals::componentAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
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|
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case STRING: |
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return current_component->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval, |
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&(the_event->err_msg)); |
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break; |
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|
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case DOUBLE: |
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return current_component->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval, |
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&(the_event->err_msg)); |
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break; |
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|
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case INT: |
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return current_component->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival, |
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&(the_event->err_msg)); |
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break; |
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|
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default: |
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the_event->err_msg = strdup( "Globals error. Invalid component" |
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" assignment type" ); |
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return 0; |
322 |
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break; |
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} |
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return 0; |
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} |
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|
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int Globals::componentEnd( event* the_event ){ |
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|
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the_event->err_msg = current_component->checkMe(); |
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if( the_event->err_msg != NULL ) return 0; |
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|
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return 1; |
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} |
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|
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int Globals::newZconstraint( event* the_event ){ |
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|
337 |
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|
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int index = the_event->evt.blk_index; |
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char err[200]; |
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current_zConstraint = new ZconStamp( index ); |
341 |
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|
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have_zConstraints = 1; |
343 |
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|
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if( have_n_zConstraints && index < n_zConstraints ) |
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zConstraints[index] = current_zConstraint; |
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else{ |
347 |
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if( have_n_zConstraints ){ |
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sprintf( err, "meta-data parsing error: %d out of nZconstraints range", |
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index ); |
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the_event->err_msg = strdup( err ); |
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return 0; |
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} |
353 |
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else{ |
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the_event->err_msg = strdup("meta-data parsing error: nZconstraints" |
355 |
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" not given before" |
356 |
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" first zConstraint declaration." ); |
357 |
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return 0; |
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} |
359 |
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} |
360 |
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|
361 |
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return 1; |
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} |
363 |
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|
364 |
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|
365 |
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|
366 |
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int Globals::zConstraintAssign( event* the_event ){ |
367 |
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|
368 |
< |
switch( the_event->evt.asmt.asmt_type ){ |
369 |
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|
370 |
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case STRING: |
371 |
< |
return current_zConstraint->assignString( the_event->evt.asmt.lhs, |
372 |
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the_event->evt.asmt.rhs.sval, |
373 |
< |
&(the_event->err_msg)); |
374 |
< |
break; |
375 |
< |
|
376 |
< |
case DOUBLE: |
377 |
< |
return current_zConstraint->assignDouble( the_event->evt.asmt.lhs, |
378 |
< |
the_event->evt.asmt.rhs.dval, |
379 |
< |
&(the_event->err_msg)); |
380 |
< |
break; |
381 |
< |
|
382 |
< |
case INT: |
383 |
< |
return current_zConstraint->assignInt( the_event->evt.asmt.lhs, |
384 |
< |
the_event->evt.asmt.rhs.ival, |
385 |
< |
&(the_event->err_msg)); |
386 |
< |
break; |
387 |
< |
|
388 |
< |
default: |
389 |
< |
the_event->err_msg = strdup( "Globals error. Invalid zConstraint" |
390 |
< |
" assignment type" ); |
391 |
< |
return 0; |
392 |
< |
break; |
393 |
< |
} |
394 |
< |
return 0; |
395 |
< |
} |
396 |
< |
|
397 |
< |
int Globals::zConstraintEnd( event* the_event ){ |
398 |
< |
|
399 |
< |
the_event->err_msg = current_zConstraint->checkMe(); |
400 |
< |
if( the_event->err_msg != NULL ) return 0; |
401 |
< |
|
402 |
< |
return 1; |
403 |
< |
} |
404 |
< |
|
405 |
< |
int Globals::globalAssign( event* the_event ){ |
406 |
< |
|
407 |
< |
int key; |
408 |
< |
int token; |
409 |
< |
interface_assign_type the_type = the_event->evt.asmt.asmt_type; |
410 |
< |
char* lhs = the_event->evt.asmt.lhs; |
411 |
< |
char err[300]; |
412 |
< |
|
413 |
< |
token = 0; |
414 |
< |
|
415 |
< |
CommandMapType::iterator iter; |
416 |
< |
std::string keyword(lhs); |
417 |
< |
iter = command_table.find(keyword); |
418 |
< |
if (iter != command_table.end()) { |
419 |
< |
token = iter->second; |
420 |
< |
} |
421 |
< |
|
422 |
< |
if( token ){ |
423 |
< |
|
424 |
< |
switch( token ){ |
425 |
< |
|
426 |
< |
case G_FORCEFIELD: |
427 |
< |
if( the_type == STRING ){ |
428 |
< |
strcpy( force_field, the_event->evt.asmt.rhs.sval ); |
429 |
< |
have_force_field = 1; |
430 |
< |
return 1; |
431 |
< |
} |
432 |
< |
|
433 |
< |
the_event->err_msg = |
434 |
< |
strdup( "Error in parsing meta-data file!\n\tforceField was not a string assignment.\n" ); |
435 |
< |
return 0; |
436 |
< |
break; |
437 |
< |
|
438 |
< |
case G_NCOMPONENTS: |
439 |
< |
if( the_type == STRING ){ |
440 |
< |
the_event->err_msg = |
441 |
< |
strdup("Error in parsing meta-data file!\n\tnComponents is not a double or an int.\n" ); |
442 |
< |
return 0; |
443 |
< |
} |
444 |
< |
|
445 |
< |
else if( the_type == DOUBLE ){ |
446 |
< |
n_components = (int)the_event->evt.asmt.rhs.dval; |
447 |
< |
components = new Component*[n_components]; |
448 |
< |
have_n_components = 1; |
449 |
< |
return 1; |
450 |
< |
} |
451 |
< |
|
452 |
< |
else{ |
453 |
< |
n_components = the_event->evt.asmt.rhs.ival; |
454 |
< |
components = new Component*[n_components]; |
455 |
< |
have_n_components = 1; |
456 |
< |
return 1; |
457 |
< |
} |
458 |
< |
break; |
459 |
< |
|
460 |
< |
case G_NZCONSTRAINTS: |
461 |
< |
if( the_type == STRING ){ |
462 |
< |
the_event->err_msg = |
463 |
< |
strdup("Error in parsing meta-data file!\n\tnZconstraints is not a double or an int.\n" ); |
464 |
< |
return 0; |
465 |
< |
} |
466 |
< |
|
467 |
< |
else if( the_type == DOUBLE ){ |
468 |
< |
n_zConstraints = (int)the_event->evt.asmt.rhs.dval; |
469 |
< |
zConstraints = new ZconStamp*[n_zConstraints]; |
470 |
< |
have_n_zConstraints = 1; |
471 |
< |
return 1; |
472 |
< |
} |
473 |
< |
|
474 |
< |
else{ |
475 |
< |
n_zConstraints = the_event->evt.asmt.rhs.ival; |
476 |
< |
zConstraints = new ZconStamp*[n_zConstraints]; |
477 |
< |
have_n_zConstraints = 1; |
478 |
< |
return 1; |
479 |
< |
} |
480 |
< |
break; |
481 |
< |
|
482 |
< |
case G_TARGETTEMP: |
483 |
< |
switch( the_type ){ |
484 |
< |
|
485 |
< |
case STRING: |
486 |
< |
the_event->err_msg = |
487 |
< |
strdup( "Error in parsing meta-data file!\n\ttargetTemp is not a double or int.\n" ); |
488 |
< |
return 0; |
489 |
< |
break; |
490 |
< |
|
491 |
< |
case DOUBLE: |
492 |
< |
target_temp = the_event->evt.asmt.rhs.dval; |
493 |
< |
have_target_temp = 1; |
494 |
< |
return 1; |
495 |
< |
break; |
496 |
< |
|
497 |
< |
case INT: |
498 |
< |
target_temp = (double)the_event->evt.asmt.rhs.ival; |
499 |
< |
have_target_temp = 1; |
500 |
< |
return 1; |
501 |
< |
break; |
502 |
< |
|
503 |
< |
default: |
504 |
< |
the_event->err_msg = |
505 |
< |
strdup( "Error in parsing meta-data file!\n\ttargetTemp unrecognized.\n" ); |
506 |
< |
return 0; |
507 |
< |
break; |
508 |
< |
} |
509 |
< |
break; |
510 |
< |
|
511 |
< |
case G_ORTHOBOXTOLERANCE: |
512 |
< |
switch( the_type ){ |
513 |
< |
|
514 |
< |
case STRING: |
515 |
< |
the_event->err_msg = |
516 |
< |
strdup( "Error in parsing meta-data file!\n\torthoBoxTolerance is not a double or int.\n" ); |
517 |
< |
return 0; |
518 |
< |
break; |
519 |
< |
|
520 |
< |
case DOUBLE: |
521 |
< |
orthoBoxTolerance = the_event->evt.asmt.rhs.dval; |
522 |
< |
have_target_temp = 1; |
523 |
< |
return 1; |
524 |
< |
break; |
525 |
< |
|
526 |
< |
case INT: |
527 |
< |
orthoBoxTolerance = (double)the_event->evt.asmt.rhs.ival; |
528 |
< |
have_target_temp = 1; |
529 |
< |
return 1; |
530 |
< |
break; |
531 |
< |
|
532 |
< |
default: |
533 |
< |
the_event->err_msg = |
534 |
< |
strdup( "Global error.orthoBoxTolerance unrecognized.\n" ); |
535 |
< |
return 0; |
536 |
< |
break; |
537 |
< |
} |
538 |
< |
break; |
539 |
< |
|
540 |
< |
case G_ENSEMBLE: |
541 |
< |
if( the_type == STRING ){ |
542 |
< |
strcpy( ensemble, the_event->evt.asmt.rhs.sval ); |
543 |
< |
have_ensemble = 1; |
544 |
< |
return 1; |
545 |
< |
} |
546 |
< |
|
547 |
< |
the_event->err_msg = |
548 |
< |
strdup( "Error in parsing meta-data file!\n\tensemble was not assigned to a string\n" ); |
549 |
< |
return 0; |
550 |
< |
break; |
551 |
< |
|
552 |
< |
case G_MIXINGRULE: |
553 |
< |
if( the_type == STRING ){ |
554 |
< |
strcpy( mixingRule, the_event->evt.asmt.rhs.sval ); |
555 |
< |
return 1; |
556 |
< |
} |
557 |
< |
|
558 |
< |
the_event->err_msg = |
559 |
< |
strdup( "Error in parsing meta-data file!\n\tmixing rule was not assigned to a string\n" ); |
560 |
< |
return 0; |
561 |
< |
break; |
562 |
< |
|
563 |
< |
case G_DT: |
564 |
< |
switch( the_type ){ |
565 |
< |
|
566 |
< |
case STRING: |
567 |
< |
the_event->err_msg = |
568 |
< |
strdup( "Error in parsing meta-data file!\n\tdt is not a double or int.\n" ); |
569 |
< |
return 0; |
570 |
< |
break; |
571 |
< |
|
572 |
< |
case DOUBLE: |
573 |
< |
dt = the_event->evt.asmt.rhs.dval; |
574 |
< |
have_dt = 1; |
575 |
< |
return 1; |
576 |
< |
break; |
577 |
< |
|
578 |
< |
case INT: |
579 |
< |
dt = (double)the_event->evt.asmt.rhs.ival; |
580 |
< |
have_dt = 1; |
581 |
< |
return 1; |
582 |
< |
break; |
583 |
< |
|
584 |
< |
default: |
585 |
< |
the_event->err_msg = |
586 |
< |
strdup( "Error in parsing meta-data file!\n\tdt unrecognized.\n" ); |
587 |
< |
return 0; |
588 |
< |
break; |
589 |
< |
} |
590 |
< |
break; |
591 |
< |
|
592 |
< |
case G_RUNTIME: |
593 |
< |
switch( the_type ){ |
594 |
< |
|
595 |
< |
case STRING: |
596 |
< |
the_event->err_msg = |
597 |
< |
strdup( "Error in parsing meta-data file!\n\trunTime is not a double or int.\n" ); |
598 |
< |
return 0; |
599 |
< |
break; |
600 |
< |
|
601 |
< |
case DOUBLE: |
602 |
< |
run_time = the_event->evt.asmt.rhs.dval; |
603 |
< |
have_run_time = 1; |
604 |
< |
return 1; |
605 |
< |
break; |
606 |
< |
|
607 |
< |
case INT: |
608 |
< |
run_time = (double)the_event->evt.asmt.rhs.ival; |
609 |
< |
have_run_time = 1; |
610 |
< |
return 1; |
611 |
< |
break; |
612 |
< |
|
613 |
< |
default: |
614 |
< |
the_event->err_msg = |
615 |
< |
strdup( "Error in parsing meta-data file!\n\trunTime unrecognized.\n" ); |
616 |
< |
return 0; |
617 |
< |
break; |
618 |
< |
} |
619 |
< |
break; |
620 |
< |
|
621 |
< |
case G_INITIALCONFIG: |
622 |
< |
if( the_type == STRING ){ |
623 |
< |
strcpy( initial_config, the_event->evt.asmt.rhs.sval ); |
624 |
< |
have_initial_config = 1; |
625 |
< |
return 1; |
626 |
< |
} |
627 |
< |
|
628 |
< |
the_event->err_msg = |
629 |
< |
strdup( "Error in parsing meta-data file!\n\tinitialConfig was not a string assignment.\n" ); |
630 |
< |
return 0; |
631 |
< |
break; |
632 |
< |
|
633 |
< |
case G_FINALCONFIG: |
634 |
< |
if( the_type == STRING ){ |
635 |
< |
strcpy( final_config, the_event->evt.asmt.rhs.sval ); |
636 |
< |
have_final_config = 1; |
637 |
< |
return 1; |
638 |
< |
} |
639 |
< |
|
640 |
< |
the_event->err_msg = |
641 |
< |
strdup( "Error in parsing meta-data file!\n\tfinalConfig was not a string assignment.\n" ); |
642 |
< |
return 0; |
643 |
< |
break; |
644 |
< |
|
645 |
< |
case G_NMOL: |
646 |
< |
switch( the_type ){ |
647 |
< |
|
648 |
< |
case STRING: |
649 |
< |
the_event->err_msg = |
650 |
< |
strdup( "Error in parsing meta-data file!\n\tnMol is not a double or int.\n" ); |
651 |
< |
return 0; |
652 |
< |
break; |
653 |
< |
|
654 |
< |
case DOUBLE: |
655 |
< |
n_mol = (int)the_event->evt.asmt.rhs.dval; |
656 |
< |
have_n_mol = 1; |
657 |
< |
return 1; |
658 |
< |
break; |
659 |
< |
|
660 |
< |
case INT: |
661 |
< |
n_mol = the_event->evt.asmt.rhs.ival; |
662 |
< |
have_n_mol = 1; |
663 |
< |
return 1; |
664 |
< |
break; |
665 |
< |
|
666 |
< |
default: |
667 |
< |
the_event->err_msg = |
668 |
< |
strdup( "Error in parsing meta-data file!\n\tnMol unrecognized.\n" ); |
669 |
< |
return 0; |
670 |
< |
break; |
671 |
< |
} |
672 |
< |
break; |
673 |
< |
|
674 |
< |
case G_DENSITY: |
675 |
< |
switch( the_type ){ |
676 |
< |
|
677 |
< |
case STRING: |
678 |
< |
the_event->err_msg = |
679 |
< |
strdup( "Error in parsing meta-data file!\n\tdensity is not a double or int.\n" ); |
680 |
< |
return 0; |
681 |
< |
break; |
682 |
< |
|
683 |
< |
case DOUBLE: |
684 |
< |
density = the_event->evt.asmt.rhs.dval; |
685 |
< |
have_density = 1; |
686 |
< |
return 1; |
687 |
< |
break; |
688 |
< |
|
689 |
< |
case INT: |
690 |
< |
density = (double)the_event->evt.asmt.rhs.ival; |
691 |
< |
have_density = 1; |
692 |
< |
return 1; |
693 |
< |
break; |
694 |
< |
|
695 |
< |
default: |
696 |
< |
the_event->err_msg = |
697 |
< |
strdup( "Error in parsing meta-data file!\n\tdensity unrecognized.\n" ); |
698 |
< |
return 0; |
699 |
< |
break; |
700 |
< |
} |
701 |
< |
break; |
702 |
< |
|
703 |
< |
case G_BOX: |
704 |
< |
switch( the_type ){ |
705 |
< |
|
706 |
< |
case STRING: |
707 |
< |
the_event->err_msg = |
708 |
< |
strdup( "Error in parsing meta-data file!\n\tbox is not a double or int.\n" ); |
709 |
< |
return 0; |
710 |
< |
break; |
711 |
< |
|
712 |
< |
case DOUBLE: |
713 |
< |
box = the_event->evt.asmt.rhs.dval; |
714 |
< |
have_box = 1; |
715 |
< |
return 1; |
716 |
< |
break; |
717 |
< |
|
718 |
< |
case INT: |
719 |
< |
box = (double)the_event->evt.asmt.rhs.ival; |
720 |
< |
have_box = 1; |
721 |
< |
return 1; |
722 |
< |
break; |
723 |
< |
|
724 |
< |
default: |
725 |
< |
the_event->err_msg = |
726 |
< |
strdup( "Error in parsing meta-data file!\n\tbox unrecognized.\n" ); |
727 |
< |
return 0; |
728 |
< |
break; |
729 |
< |
} |
730 |
< |
break; |
731 |
< |
|
732 |
< |
case G_BOXX: |
733 |
< |
switch( the_type ){ |
734 |
< |
|
735 |
< |
case STRING: |
736 |
< |
the_event->err_msg = |
737 |
< |
strdup( "Error in parsing meta-data file!\n\tboxX is not a double or int.\n" ); |
738 |
< |
return 0; |
739 |
< |
break; |
740 |
< |
|
741 |
< |
case DOUBLE: |
742 |
< |
box_x = the_event->evt.asmt.rhs.dval; |
743 |
< |
have_box_x = 1; |
744 |
< |
return 1; |
745 |
< |
break; |
746 |
< |
|
747 |
< |
case INT: |
748 |
< |
box_x = (double)the_event->evt.asmt.rhs.ival; |
749 |
< |
have_box_x = 1; |
750 |
< |
return 1; |
751 |
< |
break; |
752 |
< |
|
753 |
< |
default: |
754 |
< |
the_event->err_msg = |
755 |
< |
strdup( "Error in parsing meta-data file!\n\tboxX unrecognized.\n" ); |
756 |
< |
return 0; |
757 |
< |
break; |
758 |
< |
} |
759 |
< |
break; |
760 |
< |
|
761 |
< |
case G_BOXY: |
762 |
< |
switch( the_type ){ |
763 |
< |
|
764 |
< |
case STRING: |
765 |
< |
the_event->err_msg = |
766 |
< |
strdup( "Error in parsing meta-data file!\n\tboxY is not a double or int.\n" ); |
767 |
< |
return 0; |
768 |
< |
break; |
769 |
< |
|
770 |
< |
case DOUBLE: |
771 |
< |
box_y = the_event->evt.asmt.rhs.dval; |
772 |
< |
have_box_y = 1; |
773 |
< |
return 1; |
774 |
< |
break; |
775 |
< |
|
776 |
< |
case INT: |
777 |
< |
box_y = (double)the_event->evt.asmt.rhs.ival; |
778 |
< |
have_box_y = 1; |
779 |
< |
return 1; |
780 |
< |
break; |
781 |
< |
|
782 |
< |
default: |
783 |
< |
the_event->err_msg = |
784 |
< |
strdup( "Error in parsing meta-data file!\n\tboxY unrecognized.\n" ); |
785 |
< |
return 0; |
786 |
< |
break; |
787 |
< |
} |
788 |
< |
break; |
789 |
< |
|
790 |
< |
case G_BOXZ: |
791 |
< |
switch( the_type ){ |
792 |
< |
|
793 |
< |
case STRING: |
794 |
< |
the_event->err_msg = |
795 |
< |
strdup( "Error in parsing meta-data file!\n\tboxZ is not a double or int.\n" ); |
796 |
< |
return 0; |
797 |
< |
break; |
798 |
< |
|
799 |
< |
case DOUBLE: |
800 |
< |
box_z = the_event->evt.asmt.rhs.dval; |
801 |
< |
have_box_z = 1; |
802 |
< |
return 1; |
803 |
< |
break; |
804 |
< |
|
805 |
< |
case INT: |
806 |
< |
box_z = (double)the_event->evt.asmt.rhs.ival; |
807 |
< |
have_box_z = 1; |
808 |
< |
return 1; |
809 |
< |
break; |
810 |
< |
|
811 |
< |
default: |
812 |
< |
the_event->err_msg = |
813 |
< |
strdup( "Error in parsing meta-data file!\n\tboxZ unrecognized.\n" ); |
814 |
< |
return 0; |
815 |
< |
break; |
816 |
< |
} |
817 |
< |
break; |
818 |
< |
|
819 |
< |
case G_SAMPLETIME: |
820 |
< |
switch( the_type ){ |
821 |
< |
|
822 |
< |
case STRING: |
823 |
< |
the_event->err_msg = |
824 |
< |
strdup( "Error in parsing meta-data file!\n\tsampleTime is not a double or int.\n" ); |
825 |
< |
return 0; |
826 |
< |
break; |
827 |
< |
|
828 |
< |
case DOUBLE: |
829 |
< |
sample_time = the_event->evt.asmt.rhs.dval; |
830 |
< |
have_sample_time = 1; |
831 |
< |
return 1; |
832 |
< |
break; |
833 |
< |
|
834 |
< |
case INT: |
835 |
< |
sample_time = (double)the_event->evt.asmt.rhs.ival; |
836 |
< |
have_sample_time = 1; |
837 |
< |
return 1; |
838 |
< |
break; |
839 |
< |
|
840 |
< |
default: |
841 |
< |
the_event->err_msg = |
842 |
< |
strdup( "Error in parsing meta-data file!\n\tsampleTime unrecognized.\n" ); |
843 |
< |
return 0; |
844 |
< |
break; |
845 |
< |
} |
846 |
< |
break; |
847 |
< |
|
848 |
< |
case G_STATUSTIME: |
849 |
< |
switch( the_type ){ |
850 |
< |
|
851 |
< |
case STRING: |
852 |
< |
the_event->err_msg = |
853 |
< |
strdup( "Error in parsing meta-data file!\n\tstatusTime is not a double or int.\n" ); |
854 |
< |
return 0; |
855 |
< |
break; |
856 |
< |
|
857 |
< |
case DOUBLE: |
858 |
< |
status_time = the_event->evt.asmt.rhs.dval; |
859 |
< |
have_status_time = 1; |
860 |
< |
return 1; |
861 |
< |
break; |
862 |
< |
|
863 |
< |
case INT: |
864 |
< |
status_time = (double)the_event->evt.asmt.rhs.ival; |
865 |
< |
have_status_time = 1; |
866 |
< |
return 1; |
867 |
< |
break; |
868 |
< |
|
869 |
< |
default: |
870 |
< |
the_event->err_msg = |
871 |
< |
strdup( "Error in parsing meta-data file!\n\tstatusTime unrecognized.\n" ); |
872 |
< |
return 0; |
873 |
< |
break; |
874 |
< |
} |
875 |
< |
break; |
876 |
< |
|
877 |
< |
case G_RESETTIME: |
878 |
< |
switch( the_type ){ |
879 |
< |
|
880 |
< |
case STRING: |
881 |
< |
the_event->err_msg = |
882 |
< |
strdup( "Error in parsing meta-data file!\n\tresetTime is not a double or int.\n" ); |
883 |
< |
return 0; |
884 |
< |
break; |
885 |
< |
|
886 |
< |
case DOUBLE: |
887 |
< |
resetTime = the_event->evt.asmt.rhs.dval; |
888 |
< |
have_reset_time = 1; |
889 |
< |
return 1; |
890 |
< |
break; |
891 |
< |
|
892 |
< |
case INT: |
893 |
< |
resetTime = (double)the_event->evt.asmt.rhs.ival; |
894 |
< |
have_reset_time = 1; |
895 |
< |
return 1; |
896 |
< |
break; |
897 |
< |
|
898 |
< |
default: |
899 |
< |
the_event->err_msg = |
900 |
< |
strdup( "Error in parsing meta-data file!\n\tresetTime unrecognized.\n" ); |
901 |
< |
return 0; |
902 |
< |
break; |
903 |
< |
} |
904 |
< |
break; |
905 |
< |
|
906 |
< |
case G_THERMALTIME: |
907 |
< |
switch( the_type ){ |
908 |
< |
|
909 |
< |
case STRING: |
910 |
< |
the_event->err_msg = |
911 |
< |
strdup( "Error in parsing meta-data file!\n\tthermalTime is not a double or int.\n" ); |
912 |
< |
return 0; |
913 |
< |
break; |
914 |
< |
|
915 |
< |
case DOUBLE: |
916 |
< |
thermal_time = the_event->evt.asmt.rhs.dval; |
917 |
< |
have_thermal_time = 1; |
918 |
< |
return 1; |
919 |
< |
break; |
920 |
< |
|
921 |
< |
case INT: |
922 |
< |
thermal_time = (double)the_event->evt.asmt.rhs.ival; |
923 |
< |
have_thermal_time = 1; |
924 |
< |
return 1; |
925 |
< |
break; |
926 |
< |
|
927 |
< |
default: |
928 |
< |
the_event->err_msg = |
929 |
< |
strdup( "Error in parsing meta-data file!\n\tthermalTime unrecognized.\n" ); |
930 |
< |
return 0; |
931 |
< |
break; |
932 |
< |
} |
933 |
< |
break; |
934 |
< |
|
935 |
< |
case G_RCUT: |
936 |
< |
switch( the_type ){ |
937 |
< |
|
938 |
< |
case STRING: |
939 |
< |
the_event->err_msg = |
940 |
< |
strdup( "Error in parsing meta-data file!\n\tcutoffRadius is not a double or int.\n" ); |
941 |
< |
return 0; |
942 |
< |
break; |
943 |
< |
|
944 |
< |
case DOUBLE: |
945 |
< |
rcut = the_event->evt.asmt.rhs.dval; |
946 |
< |
have_rcut = 1; |
947 |
< |
return 1; |
948 |
< |
break; |
949 |
< |
|
950 |
< |
case INT: |
951 |
< |
rcut = (double)the_event->evt.asmt.rhs.ival; |
952 |
< |
have_rcut = 1; |
953 |
< |
return 1; |
954 |
< |
break; |
955 |
< |
|
956 |
< |
default: |
957 |
< |
the_event->err_msg = |
958 |
< |
strdup( "Error in parsing meta-data file!\n\tcutoffRadius unrecognized.\n" ); |
959 |
< |
return 0; |
960 |
< |
break; |
961 |
< |
} |
962 |
< |
break; |
963 |
< |
|
964 |
< |
case G_RSW: |
965 |
< |
switch( the_type ){ |
966 |
< |
|
967 |
< |
case STRING: |
968 |
< |
the_event->err_msg = |
969 |
< |
strdup( "Error in parsing meta-data file!\n\tswitchingRadius is not a double or int.\n" ); |
970 |
< |
return 0; |
971 |
< |
break; |
972 |
< |
|
973 |
< |
case DOUBLE: |
974 |
< |
rsw = the_event->evt.asmt.rhs.dval; |
975 |
< |
have_rsw = 1; |
976 |
< |
return 1; |
977 |
< |
break; |
978 |
< |
|
979 |
< |
case INT: |
980 |
< |
rsw = (double)the_event->evt.asmt.rhs.ival; |
981 |
< |
have_rsw = 1; |
982 |
< |
return 1; |
983 |
< |
break; |
984 |
< |
|
985 |
< |
default: |
986 |
< |
the_event->err_msg = |
987 |
< |
strdup( "Error in parsing meta-data file!\n\tswitchingRadius unrecognized.\n" ); |
988 |
< |
return 0; |
989 |
< |
break; |
990 |
< |
} |
991 |
< |
break; |
992 |
< |
|
993 |
< |
case G_DIELECTRIC: |
994 |
< |
switch( the_type ){ |
995 |
< |
|
996 |
< |
case STRING: |
997 |
< |
the_event->err_msg = |
998 |
< |
strdup( "Error in parsing meta-data file!\n\tdielectric is not a double or int.\n" ); |
999 |
< |
return 0; |
1000 |
< |
break; |
1001 |
< |
|
1002 |
< |
case DOUBLE: |
1003 |
< |
dielectric = the_event->evt.asmt.rhs.dval; |
1004 |
< |
have_dielectric = 1; |
1005 |
< |
return 1; |
1006 |
< |
break; |
1007 |
< |
|
1008 |
< |
case INT: |
1009 |
< |
dielectric = (double)the_event->evt.asmt.rhs.ival; |
1010 |
< |
have_dielectric = 1; |
1011 |
< |
return 1; |
1012 |
< |
break; |
1013 |
< |
|
1014 |
< |
default: |
1015 |
< |
the_event->err_msg = |
1016 |
< |
strdup( "Error in parsing meta-data file!\n\tdielectric unrecognized.\n" ); |
1017 |
< |
return 0; |
1018 |
< |
break; |
1019 |
< |
} |
1020 |
< |
break; |
1021 |
< |
|
1022 |
< |
case G_TEMPSET: |
1023 |
< |
if( the_type == STRING ){ |
1024 |
< |
|
1025 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
1026 |
< |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
1027 |
< |
else{ |
1028 |
< |
the_event->err_msg = |
1029 |
< |
strdup( "Error in parsing meta-data file!\n\ttempSet was not \"true\" or \"false\".\n" ); |
1030 |
< |
return 0; |
1031 |
< |
} |
1032 |
< |
have_tempSet = 1; |
1033 |
< |
return 1; |
1034 |
< |
} |
1035 |
< |
|
1036 |
< |
the_event->err_msg = |
1037 |
< |
strdup( "Error in parsing meta-data file!\n\ttempSet was not \"true\" or \"false\".\n" ); |
1038 |
< |
return 0; |
1039 |
< |
break; |
1040 |
< |
|
1041 |
< |
case G_USEINITTIME: |
1042 |
< |
if( the_type == STRING ){ |
1043 |
< |
|
1044 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useInitTime = 1; |
1045 |
< |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useInitTime = 0; |
1046 |
< |
else{ |
1047 |
< |
the_event->err_msg = |
1048 |
< |
strdup( "Error in parsing meta-data file!\n\tuseInitTime was not \"true\" or \"false\".\n" ); |
1049 |
< |
return 0; |
1050 |
< |
} |
1051 |
< |
return 1; |
1052 |
< |
} |
1053 |
< |
|
1054 |
< |
the_event->err_msg = |
1055 |
< |
strdup( "Error in parsing meta-data file!\n\tuseInitTime was not \"true\" or \"false\".\n" ); |
1056 |
< |
return 0; |
1057 |
< |
break; |
1058 |
< |
|
1059 |
< |
case G_USEINIT_XS_STATE: |
1060 |
< |
if( the_type == STRING ){ |
1061 |
< |
|
1062 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) |
1063 |
< |
useInitXSstate = 1; |
1064 |
< |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) |
1065 |
< |
useInitXSstate = 0; |
1066 |
< |
else{ |
1067 |
< |
the_event->err_msg = |
1068 |
< |
strdup( "Error in parsing meta-data file!\n\tuseInitExtendedSystemState was not \"true\" or \"false\".\n" ); |
1069 |
< |
return 0; |
1070 |
< |
} |
1071 |
< |
return 1; |
1072 |
< |
} |
1073 |
< |
|
1074 |
< |
the_event->err_msg = |
1075 |
< |
strdup( "Error in parsing meta-data file!\n\tuseInitExtendedSystemState was not \"true\" or \"false\".\n" ); |
1076 |
< |
return 0; |
1077 |
< |
break; |
1078 |
< |
|
1079 |
< |
case G_USEPBC: |
1080 |
< |
if( the_type == STRING ){ |
1081 |
< |
|
1082 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
1083 |
< |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
1084 |
< |
else{ |
1085 |
< |
the_event->err_msg = |
1086 |
< |
strdup( "Error in parsing meta-data file!\n\tusePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
1087 |
< |
return 0; |
1088 |
< |
} |
1089 |
< |
return 1; |
1090 |
< |
} |
1091 |
< |
|
1092 |
< |
the_event->err_msg = |
1093 |
< |
strdup( "Error in parsing meta-data file!\n\tusePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
1094 |
< |
return 0; |
1095 |
< |
break; |
1096 |
< |
|
1097 |
< |
case G_TARGETPRESSURE: |
1098 |
< |
switch( the_type ){ |
1099 |
< |
|
1100 |
< |
case STRING: |
1101 |
< |
the_event->err_msg = |
1102 |
< |
strdup( "Error in parsing meta-data file!\n\ttargetPressure is not a double or int.\n" ); |
1103 |
< |
return 0; |
1104 |
< |
break; |
1105 |
< |
|
1106 |
< |
case DOUBLE: |
1107 |
< |
target_pressure = the_event->evt.asmt.rhs.dval; |
1108 |
< |
have_target_pressure = 1; |
1109 |
< |
return 1; |
1110 |
< |
break; |
1111 |
< |
|
1112 |
< |
case INT: |
1113 |
< |
target_pressure = (double)the_event->evt.asmt.rhs.ival; |
1114 |
< |
have_target_pressure = 1; |
1115 |
< |
return 1; |
1116 |
< |
break; |
1117 |
< |
|
1118 |
< |
default: |
1119 |
< |
the_event->err_msg = |
1120 |
< |
strdup( "Error in parsing meta-data file!\n\ttargetPressure unrecognized.\n" ); |
1121 |
< |
return 0; |
1122 |
< |
break; |
1123 |
< |
} |
1124 |
< |
break; |
1125 |
< |
|
1126 |
< |
case G_TAUTHERMOSTAT: |
1127 |
< |
switch( the_type ){ |
1128 |
< |
|
1129 |
< |
case STRING: |
1130 |
< |
the_event->err_msg = |
1131 |
< |
strdup( "Error in parsing meta-data file!\n\ttauThermostat is not a double or int.\n" ); |
1132 |
< |
return 0; |
1133 |
< |
break; |
1134 |
< |
|
1135 |
< |
case DOUBLE: |
1136 |
< |
tau_thermostat = the_event->evt.asmt.rhs.dval; |
1137 |
< |
have_tau_thermostat = 1; |
1138 |
< |
return 1; |
1139 |
< |
break; |
1140 |
< |
|
1141 |
< |
case INT: |
1142 |
< |
tau_thermostat = (double)the_event->evt.asmt.rhs.ival; |
1143 |
< |
have_tau_thermostat = 1; |
1144 |
< |
return 1; |
1145 |
< |
break; |
1146 |
< |
|
1147 |
< |
default: |
1148 |
< |
the_event->err_msg = |
1149 |
< |
strdup( "Error in parsing meta-data file!\n\ttauThermostat unrecognized.\n" ); |
1150 |
< |
return 0; |
1151 |
< |
break; |
1152 |
< |
} |
1153 |
< |
break; |
1154 |
< |
|
1155 |
< |
case G_TAUBAROSTAT: |
1156 |
< |
switch( the_type ){ |
1157 |
< |
|
1158 |
< |
case STRING: |
1159 |
< |
the_event->err_msg = |
1160 |
< |
strdup( "Error in parsing meta-data file!\n\ttauBarostat is not a double or int.\n" ); |
1161 |
< |
return 0; |
1162 |
< |
break; |
1163 |
< |
|
1164 |
< |
case DOUBLE: |
1165 |
< |
tau_barostat = the_event->evt.asmt.rhs.dval; |
1166 |
< |
have_tau_barostat = 1; |
1167 |
< |
return 1; |
1168 |
< |
break; |
1169 |
< |
|
1170 |
< |
case INT: |
1171 |
< |
tau_barostat = (double)the_event->evt.asmt.rhs.ival; |
1172 |
< |
have_tau_barostat = 1; |
1173 |
< |
return 1; |
1174 |
< |
break; |
1175 |
< |
|
1176 |
< |
default: |
1177 |
< |
the_event->err_msg = |
1178 |
< |
strdup( "Error in parsing meta-data file!\n\ttauBarostat unrecognized.\n" ); |
1179 |
< |
return 0; |
1180 |
< |
break; |
1181 |
< |
} |
1182 |
< |
break; |
1183 |
< |
|
1184 |
< |
case G_ZCONSTIME: |
1185 |
< |
switch( the_type ){ |
1186 |
< |
|
1187 |
< |
case STRING: |
1188 |
< |
the_event->err_msg = |
1189 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_time is not a double or int.\n" ); |
1190 |
< |
return 0; |
1191 |
< |
break; |
1192 |
< |
|
1193 |
< |
case DOUBLE: |
1194 |
< |
zcons_time = the_event->evt.asmt.rhs.dval; |
1195 |
< |
have_zcons_time = 1; |
1196 |
< |
return 1; |
1197 |
< |
break; |
1198 |
< |
|
1199 |
< |
case INT: |
1200 |
< |
zcons_time = (double)the_event->evt.asmt.rhs.ival; |
1201 |
< |
have_zcons_time = 1; |
1202 |
< |
return 1; |
1203 |
< |
break; |
1204 |
< |
|
1205 |
< |
default: |
1206 |
< |
the_event->err_msg = |
1207 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_time unrecognized.\n" ); |
1208 |
< |
return 0; |
1209 |
< |
break; |
1210 |
< |
} |
1211 |
< |
break; |
1212 |
< |
|
1213 |
< |
case G_ZCONSTOL: |
1214 |
< |
switch( the_type ){ |
1215 |
< |
|
1216 |
< |
case STRING: |
1217 |
< |
the_event->err_msg = |
1218 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_tol is not a double or int.\n" ); |
1219 |
< |
return 0; |
1220 |
< |
break; |
1221 |
< |
|
1222 |
< |
case DOUBLE: |
1223 |
< |
zcons_tol = the_event->evt.asmt.rhs.dval; |
1224 |
< |
have_zcons_tol = 1; |
1225 |
< |
return 1; |
1226 |
< |
break; |
1227 |
< |
|
1228 |
< |
case INT: |
1229 |
< |
zcons_tol = (double)the_event->evt.asmt.rhs.ival; |
1230 |
< |
have_zcons_tol = 1; |
1231 |
< |
return 1; |
1232 |
< |
break; |
1233 |
< |
|
1234 |
< |
default: |
1235 |
< |
the_event->err_msg = |
1236 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_ol unrecognized.\n" ); |
1237 |
< |
return 0; |
1238 |
< |
break; |
1239 |
< |
} |
1240 |
< |
break; |
1241 |
< |
|
1242 |
< |
case G_ZCONSFORCEPOLICY: |
1243 |
< |
switch( the_type ){ |
1244 |
< |
|
1245 |
< |
case STRING: |
1246 |
< |
strcpy(zconsForcePolicy, the_event->evt.asmt.rhs.sval); |
1247 |
< |
|
1248 |
< |
for(int i = 0; zconsForcePolicy[i] != '\0'; i++) |
1249 |
< |
{ |
1250 |
< |
zconsForcePolicy[i] = toupper(zconsForcePolicy[i]); |
1251 |
< |
} |
1252 |
< |
have_zcons_force_policy = 1; |
1253 |
< |
return 1; |
1254 |
< |
break; |
1255 |
< |
|
1256 |
< |
case DOUBLE: |
1257 |
< |
the_event->err_msg = |
1258 |
< |
strdup( "Error in parsing meta-data file!\n\tzconsForcePolicy is not a double or int.\n" ); |
1259 |
< |
return 0; |
1260 |
< |
break; |
1261 |
< |
|
1262 |
< |
case INT: |
1263 |
< |
the_event->err_msg = |
1264 |
< |
strdup( "Error in parsing meta-data file!\n\tzconsForcePolicy is not a double or int.\n" ); |
1265 |
< |
return 0; |
1266 |
< |
break; |
1267 |
< |
|
1268 |
< |
default: |
1269 |
< |
the_event->err_msg = |
1270 |
< |
strdup( "Error in parsing meta-data file!\n\tzconsForcePolicy unrecognized.\n" ); |
1271 |
< |
return 0; |
1272 |
< |
break; |
1273 |
< |
} |
1274 |
< |
break; |
1275 |
< |
|
1276 |
< |
case G_ZCONSGAP: |
1277 |
< |
switch( the_type ){ |
1278 |
< |
|
1279 |
< |
case STRING: |
1280 |
< |
the_event->err_msg = |
1281 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_gap is not a double or int.\n" ); |
1282 |
< |
return 0; |
1283 |
< |
break; |
1284 |
< |
|
1285 |
< |
case DOUBLE: |
1286 |
< |
zcons_gap = the_event->evt.asmt.rhs.dval; |
1287 |
< |
have_zcons_gap= 1; |
1288 |
< |
return 1; |
1289 |
< |
break; |
1290 |
< |
|
1291 |
< |
case INT: |
1292 |
< |
zcons_gap= (double)the_event->evt.asmt.rhs.ival; |
1293 |
< |
have_zcons_gap= 1; |
1294 |
< |
return 1; |
1295 |
< |
break; |
1296 |
< |
|
1297 |
< |
default: |
1298 |
< |
the_event->err_msg = |
1299 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_gap unrecognized.\n" ); |
1300 |
< |
return 0; |
1301 |
< |
break; |
1302 |
< |
} |
1303 |
< |
break; |
1304 |
< |
|
1305 |
< |
case G_ZCONSFIXTIME: |
1306 |
< |
switch( the_type ){ |
1307 |
< |
|
1308 |
< |
case STRING: |
1309 |
< |
the_event->err_msg = |
1310 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_fixtime is not a double or int.\n" ); |
1311 |
< |
return 0; |
1312 |
< |
break; |
1313 |
< |
|
1314 |
< |
case DOUBLE: |
1315 |
< |
zcons_fixtime= the_event->evt.asmt.rhs.dval; |
1316 |
< |
have_zcons_fixtime= 1; |
1317 |
< |
return 1; |
1318 |
< |
break; |
1319 |
< |
|
1320 |
< |
case INT: |
1321 |
< |
zcons_fixtime= (double)the_event->evt.asmt.rhs.ival; |
1322 |
< |
have_zcons_fixtime= 1; |
1323 |
< |
return 1; |
1324 |
< |
break; |
1325 |
< |
|
1326 |
< |
default: |
1327 |
< |
the_event->err_msg = |
1328 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_fixtime unrecognized.\n" ); |
1329 |
< |
return 0; |
1330 |
< |
break; |
1331 |
< |
} |
1332 |
< |
break; |
1333 |
< |
|
1334 |
< |
case G_ZCONSUSINGSMD: |
1335 |
< |
switch( the_type ){ |
1336 |
< |
|
1337 |
< |
case STRING: |
1338 |
< |
the_event->err_msg = |
1339 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_fixtime is not an int.\n" ); |
1340 |
< |
return 0; |
1341 |
< |
break; |
1342 |
< |
|
1343 |
< |
case DOUBLE: |
1344 |
< |
the_event->err_msg = |
1345 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_fixtime is not an int.\n" ); |
1346 |
< |
return 0; |
1347 |
< |
break; |
1348 |
< |
|
1349 |
< |
case INT: |
1350 |
< |
zcons_using_smd= the_event->evt.asmt.rhs.ival; |
1351 |
< |
have_zcons_using_smd= 1; |
1352 |
< |
return 1; |
1353 |
< |
break; |
1354 |
< |
|
1355 |
< |
default: |
1356 |
< |
the_event->err_msg = |
1357 |
< |
strdup( "Error in parsing meta-data file!\n\tzcons_usingsmd unrecognized.\n" ); |
1358 |
< |
return 0; |
1359 |
< |
break; |
1360 |
< |
} |
1361 |
< |
break; |
1362 |
< |
|
1363 |
< |
case G_MINIMIZER: |
1364 |
< |
switch( the_type ){ |
1365 |
< |
|
1366 |
< |
case STRING: |
1367 |
< |
strcpy(minimizer_name, the_event->evt.asmt.rhs.sval); |
1368 |
< |
|
1369 |
< |
for(int i = 0; zconsForcePolicy[i] != '\0'; i++){ |
1370 |
< |
zconsForcePolicy[i] = toupper(zconsForcePolicy[i]); |
1371 |
< |
} |
1372 |
< |
have_minimizer= 1; |
1373 |
< |
return 1; |
1374 |
< |
break; |
1375 |
< |
|
1376 |
< |
case DOUBLE: |
1377 |
< |
the_event->err_msg = |
1378 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_name is not a double or int.\n" ); |
1379 |
< |
return 0; |
1380 |
< |
break; |
1381 |
< |
|
1382 |
< |
case INT: |
1383 |
< |
the_event->err_msg = |
1384 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_name is not a double or int.\n" ); |
1385 |
< |
return 0; |
1386 |
< |
break; |
1387 |
< |
|
1388 |
< |
default: |
1389 |
< |
the_event->err_msg = |
1390 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_name unrecognized.\n" ); |
1391 |
< |
return 0; |
1392 |
< |
break; |
1393 |
< |
} |
1394 |
< |
break; |
1395 |
< |
|
1396 |
< |
case G_MIN_MAXITER: |
1397 |
< |
switch( the_type ){ |
1398 |
< |
|
1399 |
< |
case STRING: |
1400 |
< |
the_event->err_msg = |
1401 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_maxiteration is not a double or int.\n" ); |
1402 |
< |
return 1; |
1403 |
< |
break; |
1404 |
< |
|
1405 |
< |
case DOUBLE: |
1406 |
< |
minimizer_maxiteration = (int)the_event->evt.asmt.rhs.dval; |
1407 |
< |
have_minimizer_maxiteration = 1; |
1408 |
< |
return 1; |
1409 |
< |
break; |
1410 |
< |
|
1411 |
< |
case INT: |
1412 |
< |
minimizer_maxiteration = the_event->evt.asmt.rhs.ival; |
1413 |
< |
have_minimizer_maxiteration = 1; |
1414 |
< |
return 1; |
1415 |
< |
break; |
1416 |
< |
|
1417 |
< |
default: |
1418 |
< |
the_event->err_msg = |
1419 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_maxiteration unrecognized.\n" ); |
1420 |
< |
return 0; |
1421 |
< |
break; |
1422 |
< |
} |
1423 |
< |
break; |
1424 |
< |
|
1425 |
< |
case G_MIN_WRITEFRQ: |
1426 |
< |
switch( the_type ){ |
1427 |
< |
|
1428 |
< |
case STRING: |
1429 |
< |
the_event->err_msg = |
1430 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_writefrq is not an int.\n" ); |
1431 |
< |
return 1; |
1432 |
< |
break; |
1433 |
< |
|
1434 |
< |
case DOUBLE: |
1435 |
< |
the_event->err_msg = |
1436 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_writefrq is not an int.\n" ); |
1437 |
< |
return 1; |
1438 |
< |
break; |
1439 |
< |
|
1440 |
< |
case INT: |
1441 |
< |
minimizer_writefrq= the_event->evt.asmt.rhs.ival; |
1442 |
< |
have_minimizer_writefrq = 1; |
1443 |
< |
return 1; |
1444 |
< |
break; |
1445 |
< |
|
1446 |
< |
default: |
1447 |
< |
the_event->err_msg = |
1448 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_writefrq unrecognized.\n" ); |
1449 |
< |
return 0; |
1450 |
< |
break; |
1451 |
< |
} |
1452 |
< |
break; |
1453 |
< |
|
1454 |
< |
case G_MIN_STEPSIZE: |
1455 |
< |
switch( the_type ){ |
1456 |
< |
|
1457 |
< |
case STRING: |
1458 |
< |
the_event->err_msg = |
1459 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_resetfrq is not a double or int.\n" ); |
1460 |
< |
return 1; |
1461 |
< |
break; |
1462 |
< |
|
1463 |
< |
case DOUBLE: |
1464 |
< |
minimizer_stepsize= the_event->evt.asmt.rhs.dval; |
1465 |
< |
have_minimizer_stepsize = 1; |
1466 |
< |
return 1; |
1467 |
< |
break; |
1468 |
< |
|
1469 |
< |
case INT: |
1470 |
< |
minimizer_stepsize= the_event->evt.asmt.rhs.ival; |
1471 |
< |
have_minimizer_stepsize = 1; |
1472 |
< |
return 1; |
1473 |
< |
break; |
1474 |
< |
|
1475 |
< |
default: |
1476 |
< |
the_event->err_msg = |
1477 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_resetfrq unrecognized.\n" ); |
1478 |
< |
return 0; |
1479 |
< |
break; |
1480 |
< |
} |
1481 |
< |
break; |
1482 |
< |
|
1483 |
< |
case G_MIN_FTOL: |
1484 |
< |
switch( the_type ){ |
1485 |
< |
|
1486 |
< |
case STRING: |
1487 |
< |
the_event->err_msg = |
1488 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ftol is not a double or int.\n" ); |
1489 |
< |
return 1; |
1490 |
< |
break; |
1491 |
< |
|
1492 |
< |
case DOUBLE: |
1493 |
< |
minimizer_ftol= the_event->evt.asmt.rhs.dval; |
1494 |
< |
have_minimizer_ftol = 1; |
1495 |
< |
return 1; |
1496 |
< |
break; |
1497 |
< |
|
1498 |
< |
case INT: |
1499 |
< |
minimizer_ftol= the_event->evt.asmt.rhs.ival; |
1500 |
< |
have_minimizer_ftol = 1; |
1501 |
< |
return 1; |
1502 |
< |
break; |
1503 |
< |
|
1504 |
< |
default: |
1505 |
< |
the_event->err_msg = |
1506 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ftol unrecognized.\n" ); |
1507 |
< |
return 0; |
1508 |
< |
break; |
1509 |
< |
} |
1510 |
< |
break; |
1511 |
< |
|
1512 |
< |
case G_MIN_GTOL: |
1513 |
< |
switch( the_type ){ |
1514 |
< |
|
1515 |
< |
case STRING: |
1516 |
< |
the_event->err_msg = |
1517 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_gtol is not a double or int.\n" ); |
1518 |
< |
return 1; |
1519 |
< |
break; |
1520 |
< |
|
1521 |
< |
case DOUBLE: |
1522 |
< |
minimizer_gtol= the_event->evt.asmt.rhs.dval; |
1523 |
< |
have_minimizer_gtol = 1; |
1524 |
< |
return 1; |
1525 |
< |
break; |
1526 |
< |
|
1527 |
< |
case INT: |
1528 |
< |
minimizer_gtol= the_event->evt.asmt.rhs.ival; |
1529 |
< |
have_minimizer_gtol = 1; |
1530 |
< |
return 1; |
1531 |
< |
break; |
1532 |
< |
|
1533 |
< |
default: |
1534 |
< |
the_event->err_msg = |
1535 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_gtol unrecognized.\n" ); |
1536 |
< |
return 0; |
1537 |
< |
break; |
1538 |
< |
} |
1539 |
< |
break; |
1540 |
< |
|
1541 |
< |
case G_MIN_LSMAXITER: |
1542 |
< |
switch( the_type ){ |
1543 |
< |
|
1544 |
< |
case STRING: |
1545 |
< |
the_event->err_msg = |
1546 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ls_maxiteration is not an int.\n" ); |
1547 |
< |
return 1; |
1548 |
< |
break; |
1549 |
< |
|
1550 |
< |
case DOUBLE: |
1551 |
< |
the_event->err_msg = |
1552 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ls_maxiteration is not an int.\n" ); |
1553 |
< |
return 1; |
1554 |
< |
break; |
1555 |
< |
|
1556 |
< |
case INT: |
1557 |
< |
minimizer_ls_maxiteration = the_event->evt.asmt.rhs.ival; |
1558 |
< |
have_minimizer_ls_maxiteration = 1; |
1559 |
< |
return 1; |
1560 |
< |
break; |
1561 |
< |
|
1562 |
< |
default: |
1563 |
< |
the_event->err_msg = |
1564 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ls_maxiteration unrecognized.\n" ); |
1565 |
< |
return 0; |
1566 |
< |
break; |
1567 |
< |
} |
1568 |
< |
break; |
1569 |
< |
|
1570 |
< |
case G_MIN_LSTOL: |
1571 |
< |
switch( the_type ){ |
1572 |
< |
|
1573 |
< |
case STRING: |
1574 |
< |
the_event->err_msg = |
1575 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ls_tol is not a double or int.\n" ); |
1576 |
< |
return 1; |
1577 |
< |
break; |
1578 |
< |
|
1579 |
< |
case DOUBLE: |
1580 |
< |
minimizer_ls_tol= the_event->evt.asmt.rhs.dval; |
1581 |
< |
have_minimizer_ls_tol = 1; |
1582 |
< |
return 1; |
1583 |
< |
break; |
1584 |
< |
|
1585 |
< |
case INT: |
1586 |
< |
minimizer_ls_tol= the_event->evt.asmt.rhs.ival; |
1587 |
< |
have_minimizer_ls_tol = 1; |
1588 |
< |
return 1; |
1589 |
< |
break; |
1590 |
< |
|
1591 |
< |
default: |
1592 |
< |
the_event->err_msg = |
1593 |
< |
strdup( "Error in parsing meta-data file!\n\tminimizer_ls_tol unrecognized.\n" ); |
1594 |
< |
return 0; |
1595 |
< |
break; |
1596 |
< |
} |
1597 |
< |
break; |
1598 |
< |
|
1599 |
< |
// add more token cases here. |
1600 |
< |
case G_SEED: |
1601 |
< |
switch( the_type ){ |
1602 |
< |
|
1603 |
< |
case STRING: |
1604 |
< |
the_event->err_msg = |
1605 |
< |
strdup( "Error in parsing meta-data file!\n\tseed is not a string.\n" ); |
1606 |
< |
return 0; |
1607 |
< |
return 0; |
1608 |
< |
break; |
1609 |
< |
|
1610 |
< |
case DOUBLE: |
1611 |
< |
have_seed = 1; |
1612 |
< |
seed = (int)the_event->evt.asmt.rhs.dval; |
1613 |
< |
return 1; |
1614 |
< |
break; |
1615 |
< |
|
1616 |
< |
case INT: |
1617 |
< |
have_seed = 1; |
1618 |
< |
seed = the_event->evt.asmt.rhs.ival ; |
1619 |
< |
return 1; |
1620 |
< |
break; |
1621 |
< |
|
1622 |
< |
default: |
1623 |
< |
the_event->err_msg = |
1624 |
< |
strdup( "Error in parsing meta-data file!\n\tseed unrecognized.\n" ); |
1625 |
< |
return 0; |
1626 |
< |
break; |
1627 |
< |
} |
1628 |
< |
break; |
1629 |
< |
|
1630 |
< |
case G_USE_SOLID_THERM_INT: |
1631 |
< |
if( the_type == STRING ){ |
1632 |
< |
|
1633 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useSolidThermInt = 1; |
1634 |
< |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useSolidThermInt = 0; |
1635 |
< |
else{ |
1636 |
< |
the_event->err_msg = |
1637 |
< |
strdup( "Error in parsing meta-data file!\n\tuseSolidThermInt was not \"true\" or \"false\".\n" ); |
1638 |
< |
return 0; |
1639 |
< |
} |
1640 |
< |
return 1; |
1641 |
< |
} |
1642 |
< |
|
1643 |
< |
the_event->err_msg = |
1644 |
< |
strdup( "Error in parsing meta-data file!\n\tuseSolidThermInt was not \"true\" or \"false\".\n" ); |
1645 |
< |
return 0; |
1646 |
< |
break; |
1647 |
< |
|
1648 |
< |
case G_USE_LIQUID_THERM_INT: |
1649 |
< |
if( the_type == STRING ){ |
1650 |
< |
|
1651 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useLiquidThermInt = 1; |
1652 |
< |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useLiquidThermInt = 0; |
1653 |
< |
else{ |
1654 |
< |
the_event->err_msg = |
1655 |
< |
strdup( "Error in parsing meta-data file!\n\tuseLiquidThermInt was not \"true\" or \"false\".\n" ); |
1656 |
< |
return 0; |
1657 |
< |
} |
1658 |
< |
return 1; |
1659 |
< |
} |
1660 |
< |
|
1661 |
< |
the_event->err_msg = |
1662 |
< |
strdup( "Error in parsing meta-data file!\n\tuseLiquidThermInt was not \"true\" or \"false\".\n" ); |
1663 |
< |
return 0; |
1664 |
< |
break; |
1665 |
< |
|
1666 |
< |
case G_THERM_INT_LAMBDA: |
1667 |
< |
switch( the_type ){ |
1668 |
< |
|
1669 |
< |
case STRING: |
1670 |
< |
the_event->err_msg = |
1671 |
< |
strdup( "Error in parsing meta-data file!\n\tthermodynamicIntegrationLambda is not a double or int.\n" ); |
1672 |
< |
return 1; |
1673 |
< |
break; |
1674 |
< |
|
1675 |
< |
case DOUBLE: |
1676 |
< |
thermodynamic_integration_lambda = the_event->evt.asmt.rhs.dval; |
1677 |
< |
have_thermodynamic_integration_lambda = 1; |
1678 |
< |
return 1; |
1679 |
< |
break; |
1680 |
< |
|
1681 |
< |
case INT: |
1682 |
< |
thermodynamic_integration_lambda = (double)the_event->evt.asmt.rhs.dval; |
1683 |
< |
have_thermodynamic_integration_lambda = 1; |
1684 |
< |
return 1; |
1685 |
< |
break; |
1686 |
< |
|
1687 |
< |
default: |
1688 |
< |
the_event->err_msg = |
1689 |
< |
strdup( "Error in parsing meta-data file!\n\tthermodynamicIntegrationLambda unrecognized.\n" ); |
1690 |
< |
return 0; |
1691 |
< |
break; |
1692 |
< |
} |
1693 |
< |
break; |
1694 |
< |
|
1695 |
< |
case G_THERM_INT_K: |
1696 |
< |
switch( the_type ){ |
1697 |
< |
|
1698 |
< |
case STRING: |
1699 |
< |
the_event->err_msg = |
1700 |
< |
strdup( "Error in parsing meta-data file!\n\tthermodynamicIntegrationK is not a double or int.\n" ); |
1701 |
< |
return 1; |
1702 |
< |
break; |
1703 |
< |
|
1704 |
< |
case DOUBLE: |
1705 |
< |
thermodynamic_integration_k = the_event->evt.asmt.rhs.dval; |
1706 |
< |
have_thermodynamic_integration_k = 1; |
1707 |
< |
return 1; |
1708 |
< |
break; |
1709 |
< |
|
1710 |
< |
case INT: |
1711 |
< |
thermodynamic_integration_k = (double)the_event->evt.asmt.rhs.dval; |
1712 |
< |
have_thermodynamic_integration_k = 1; |
1713 |
< |
return 1; |
1714 |
< |
break; |
1715 |
< |
|
1716 |
< |
default: |
1717 |
< |
the_event->err_msg = |
1718 |
< |
strdup( "Error in parsing meta-data file!\n\tthermodynamicIntegrationK unrecognized.\n" ); |
1719 |
< |
return 0; |
1720 |
< |
break; |
1721 |
< |
} |
1722 |
< |
break; |
1723 |
< |
|
1724 |
< |
case G_FORCEFIELD_VARIANT: |
1725 |
< |
if( the_type == STRING ){ |
1726 |
< |
strcpy( forcefield_variant, the_event->evt.asmt.rhs.sval ); |
1727 |
< |
have_forcefield_variant = 1; |
1728 |
< |
return 1; |
1729 |
< |
} |
1730 |
< |
|
1731 |
< |
the_event->err_msg = |
1732 |
< |
strdup( "Error in parsing meta-data file!\n\tforceFieldVariant was not a string assignment.\n" ); |
1733 |
< |
return 0; |
1734 |
< |
break; |
1735 |
< |
// add more token cases here. |
1736 |
< |
|
1737 |
< |
case G_FORCEFIELD_FILENAME: |
1738 |
< |
if( the_type == STRING ){ |
1739 |
< |
strcpy( forcefield_filename, the_event->evt.asmt.rhs.sval ); |
1740 |
< |
have_forcefield_filename = 1; |
1741 |
< |
return 1; |
1742 |
< |
} |
1743 |
< |
|
1744 |
< |
the_event->err_msg = |
1745 |
< |
strdup( "Error in parsing meta-data file!\n\tforceFieldFileName was not a string assignment.\n" ); |
1746 |
< |
return 0; |
1747 |
< |
break; |
1748 |
< |
|
1749 |
< |
case G_THERM_INT_DIST_SPRING: |
1750 |
< |
switch( the_type ){ |
1751 |
< |
|
1752 |
< |
case STRING: |
1753 |
< |
the_event->err_msg = |
1754 |
< |
strdup( "Error in parsing meta-data file!\n\tthermIntDistSpringConst is not a double or int.\n" ); |
1755 |
< |
return 1; |
1756 |
< |
break; |
1757 |
< |
|
1758 |
< |
case DOUBLE: |
1759 |
< |
therm_int_dist_spring = the_event->evt.asmt.rhs.dval; |
1760 |
< |
have_dist_spring_constant = 1; |
1761 |
< |
return 1; |
1762 |
< |
break; |
1763 |
< |
|
1764 |
< |
case INT: |
1765 |
< |
therm_int_dist_spring = (double)the_event->evt.asmt.rhs.dval; |
1766 |
< |
have_dist_spring_constant = 1; |
1767 |
< |
return 1; |
1768 |
< |
break; |
1769 |
< |
|
1770 |
< |
default: |
1771 |
< |
the_event->err_msg = |
1772 |
< |
strdup( "Error in parsing meta-data file!\n\tthermIntDistSpringConst unrecognized.\n" ); |
1773 |
< |
return 0; |
1774 |
< |
break; |
1775 |
< |
} |
1776 |
< |
break; |
1777 |
< |
|
1778 |
< |
case G_THERM_INT_THETA_SPRING: |
1779 |
< |
switch( the_type ){ |
1780 |
< |
|
1781 |
< |
case STRING: |
1782 |
< |
the_event->err_msg = |
1783 |
< |
strdup( "Error in parsing meta-data file!\n\tthermIntThetaSpringConst is not a double or int.\n" ); |
1784 |
< |
return 1; |
1785 |
< |
break; |
1786 |
< |
|
1787 |
< |
case DOUBLE: |
1788 |
< |
therm_int_theta_spring = the_event->evt.asmt.rhs.dval; |
1789 |
< |
have_theta_spring_constant = 1; |
1790 |
< |
return 1; |
1791 |
< |
break; |
1792 |
< |
|
1793 |
< |
case INT: |
1794 |
< |
therm_int_theta_spring = (double)the_event->evt.asmt.rhs.dval; |
1795 |
< |
have_theta_spring_constant = 1; |
1796 |
< |
return 1; |
1797 |
< |
break; |
1798 |
< |
|
1799 |
< |
default: |
1800 |
< |
the_event->err_msg = |
1801 |
< |
strdup( "Error in parsing meta-data file!\n\tthermIntThetaSpringConst unrecognized.\n" ); |
1802 |
< |
return 0; |
1803 |
< |
break; |
1804 |
< |
} |
1805 |
< |
break; |
1806 |
< |
|
1807 |
< |
case G_THERM_INT_OMEGA_SPRING: |
1808 |
< |
switch( the_type ){ |
1809 |
< |
|
1810 |
< |
case STRING: |
1811 |
< |
the_event->err_msg = |
1812 |
< |
strdup( "Error in parsing meta-data file!\n\tthermIntOmegaSpringConst is not a double or int.\n" ); |
1813 |
< |
return 1; |
1814 |
< |
break; |
1815 |
< |
|
1816 |
< |
case DOUBLE: |
1817 |
< |
therm_int_omega_spring = the_event->evt.asmt.rhs.dval; |
1818 |
< |
have_omega_spring_constant = 1; |
1819 |
< |
return 1; |
1820 |
< |
break; |
1821 |
< |
|
1822 |
< |
case INT: |
1823 |
< |
therm_int_omega_spring = (double)the_event->evt.asmt.rhs.dval; |
1824 |
< |
have_omega_spring_constant = 1; |
1825 |
< |
return 1; |
1826 |
< |
break; |
1827 |
< |
|
1828 |
< |
default: |
1829 |
< |
the_event->err_msg = |
1830 |
< |
strdup( "Error in parsing meta-data file!\n\tthermIntOmegaSpringConst unrecognized.\n" ); |
1831 |
< |
return 0; |
1832 |
< |
break; |
1833 |
< |
} |
1834 |
< |
break; |
1835 |
< |
|
1836 |
< |
case G_SURFACETENSION: |
1837 |
< |
switch( the_type ){ |
1838 |
< |
|
1839 |
< |
case STRING: |
1840 |
< |
the_event->err_msg = |
1841 |
< |
strdup( "Error in parsing meta-data file!\n\tsurfaceTension is not a double or int.\n" ); |
1842 |
< |
return 1; |
1843 |
< |
break; |
1844 |
< |
|
1845 |
< |
case DOUBLE: |
1846 |
< |
surface_tension= the_event->evt.asmt.rhs.dval; |
1847 |
< |
have_surface_tension = 1; |
1848 |
< |
return 1; |
1849 |
< |
break; |
1850 |
< |
|
1851 |
< |
case INT: |
1852 |
< |
surface_tension = (double)the_event->evt.asmt.rhs.dval; |
1853 |
< |
have_surface_tension = 1; |
1854 |
< |
return 1; |
1855 |
< |
break; |
1856 |
< |
|
1857 |
< |
default: |
1858 |
< |
the_event->err_msg = |
1859 |
< |
strdup( "Error in parsing meta-data file!\n\tsurfaceTension unrecognized.\n" ); |
1860 |
< |
return 0; |
1861 |
< |
break; |
1862 |
< |
} |
1863 |
< |
break; |
1864 |
< |
|
1865 |
< |
case G_PRINTPRESSURETENSOR: |
1866 |
< |
if( the_type == STRING ){ |
1867 |
< |
|
1868 |
< |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) { |
1869 |
< |
have_print_pressure_tensor= 1; |
1870 |
< |
print_pressure_tensor = 1; |
1871 |
< |
} else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) { |
1872 |
< |
have_print_pressure_tensor= 1; |
1873 |
< |
print_pressure_tensor = 0; |
1874 |
< |
} else{ |
1875 |
< |
the_event->err_msg = |
1876 |
< |
strdup( "Error in parsing meta-data file!\n\tprintPressureTensor was not \"true\" or \"false\".\n" ); |
1877 |
< |
return 0; |
1878 |
< |
} |
1879 |
< |
return 1; |
1880 |
< |
} |
1881 |
< |
|
1882 |
< |
the_event->err_msg = |
1883 |
< |
strdup( "Error in parsing meta-data file!\n\tprintPressureTensor was not \"true\" or \"false\".\n" ); |
1884 |
< |
return 0; |
1885 |
< |
break; |
1886 |
< |
|
1887 |
< |
case G_ELECTRO_SUM_METHOD: |
1888 |
< |
switch( the_type ){ |
1889 |
< |
|
1890 |
< |
case STRING: |
1891 |
< |
strcpy(electrostaticSummationMethod, the_event->evt.asmt.rhs.sval); |
1892 |
< |
|
1893 |
< |
for(int i = 0; electrostaticSummationMethod[i] != '\0'; i++) |
1894 |
< |
{ |
1895 |
< |
electrostaticSummationMethod[i] = toupper(electrostaticSummationMethod[i]); |
1896 |
< |
} |
1897 |
< |
have_electro_sum_method = 1; |
1898 |
< |
return 1; |
1899 |
< |
break; |
1900 |
< |
|
1901 |
< |
case DOUBLE: |
1902 |
< |
the_event->err_msg = |
1903 |
< |
strdup( "Error in parsing meta-data file!\n\telectrostaticSummationMethod should be a string!\n" ); |
1904 |
< |
return 0; |
1905 |
< |
break; |
1906 |
< |
|
1907 |
< |
case INT: |
1908 |
< |
the_event->err_msg = |
1909 |
< |
strdup( "Error in parsing meta-data file!\n\telectrostaticSummationMethod should be a string!\n" ); |
1910 |
< |
return 0; |
1911 |
< |
break; |
1912 |
< |
|
1913 |
< |
default: |
1914 |
< |
the_event->err_msg = |
1915 |
< |
strdup( "Error in parsing meta-data file!\n\telectrostaticSummationMethod unrecognized.\n" ); |
1916 |
< |
return 0; |
1917 |
< |
break; |
1918 |
< |
} |
1919 |
< |
break; |
1920 |
< |
|
1921 |
< |
case G_DAMPING_ALPHA: |
1922 |
< |
switch( the_type ){ |
1923 |
< |
|
1924 |
< |
case STRING: |
1925 |
< |
the_event->err_msg = |
1926 |
< |
strdup( "Error in parsing meta-data file!\n\tdampingAlpha is not a double or int.\n" ); |
1927 |
< |
return 1; |
1928 |
< |
break; |
1929 |
< |
|
1930 |
< |
case DOUBLE: |
1931 |
< |
dampingAlpha = the_event->evt.asmt.rhs.dval; |
1932 |
< |
have_damping_alpha = 1; |
1933 |
< |
return 1; |
1934 |
< |
break; |
1935 |
< |
|
1936 |
< |
case INT: |
1937 |
< |
dampingAlpha = (double)the_event->evt.asmt.rhs.dval; |
1938 |
< |
have_damping_alpha = 1; |
1939 |
< |
return 1; |
1940 |
< |
break; |
1941 |
< |
|
1942 |
< |
default: |
1943 |
< |
the_event->err_msg = |
1944 |
< |
strdup( "Error in parsing meta-data file!\n\tdampingAlpha unrecognized.\n" ); |
1945 |
< |
return 0; |
1946 |
< |
break; |
1947 |
< |
} |
1948 |
< |
break; |
1949 |
< |
|
1950 |
< |
case G_CUTOFFPOLICY: |
1951 |
< |
switch( the_type ){ |
1952 |
< |
|
1953 |
< |
case STRING: |
1954 |
< |
strcpy(cutoffPolicy, the_event->evt.asmt.rhs.sval); |
1955 |
< |
|
1956 |
< |
for(int i = 0; cutoffPolicy[i] != '\0'; i++) |
1957 |
< |
{ |
1958 |
< |
cutoffPolicy[i] = toupper(cutoffPolicy[i]); |
1959 |
< |
} |
1960 |
< |
have_cutoff_policy = 1; |
1961 |
< |
return 1; |
1962 |
< |
break; |
1963 |
< |
|
1964 |
< |
case DOUBLE: |
1965 |
< |
the_event->err_msg = |
1966 |
< |
strdup( "Error in parsing meta-data file!\n\tcutoffPolicy should be a string!\n" ); |
1967 |
< |
return 0; |
1968 |
< |
break; |
1969 |
< |
|
1970 |
< |
case INT: |
1971 |
< |
the_event->err_msg = |
1972 |
< |
strdup( "Error in parsing meta-data file!\n\tcutoffPolicy should be a string!\n" ); |
1973 |
< |
return 0; |
1974 |
< |
break; |
1975 |
< |
|
1976 |
< |
default: |
1977 |
< |
the_event->err_msg = |
1978 |
< |
strdup( "Error in parsing meta-data file!\n\tcutoffPolicy unrecognized.\n" ); |
1979 |
< |
return 0; |
1980 |
< |
break; |
1981 |
< |
} |
1982 |
< |
break; |
1983 |
< |
|
1984 |
< |
|
1985 |
< |
// add more token cases here. |
1986 |
< |
} |
1987 |
< |
} |
1988 |
< |
|
1989 |
< |
switch( the_type ){ |
1990 |
< |
|
1991 |
< |
case STRING: |
1992 |
< |
sprintf( err, |
1993 |
< |
"\tUnrecognized assignment:\n" |
1994 |
< |
"\t\t-> %s = %s\n", |
1995 |
< |
lhs, the_event->evt.asmt.rhs.sval ); |
1996 |
< |
break; |
1997 |
< |
|
1998 |
< |
case DOUBLE: |
1999 |
< |
sprintf( err, |
2000 |
< |
"\tUnrecognized assignment:\n" |
2001 |
< |
"\t\t-> %s = %lf\n", |
2002 |
< |
lhs, the_event->evt.asmt.rhs.dval ); |
2003 |
< |
break; |
2004 |
< |
|
2005 |
< |
case INT: |
2006 |
< |
sprintf( err, |
2007 |
< |
"\tUnrecognized assignment:\n" |
2008 |
< |
"\t\t-> %s = %d\n", |
2009 |
< |
lhs, the_event->evt.asmt.rhs.ival ); |
2010 |
< |
break; |
2011 |
< |
|
2012 |
< |
default: |
2013 |
< |
sprintf( err, |
2014 |
< |
"\tUnrecognized assignment:\n" |
2015 |
< |
"\t\t-> %s = ?\n", |
2016 |
< |
lhs ); |
2017 |
< |
break; |
2018 |
< |
} |
2019 |
< |
|
2020 |
< |
the_event->err_msg = strdup( err ); |
2021 |
< |
return 0; |
2022 |
< |
} |
2023 |
< |
|
2024 |
< |
char* Globals::checkMe( void ){ |
2025 |
< |
|
2026 |
< |
char err[300]; |
2027 |
< |
short int have_err = 0; |
2028 |
< |
|
2029 |
< |
strcpy( err, "The following required keywords are missing:\n" ); |
2030 |
< |
|
2031 |
< |
if( !have_force_field ){ |
2032 |
< |
strcat( err, "\t\t->forceField\n" ); |
2033 |
< |
have_err= 1; |
2034 |
< |
} |
2035 |
< |
|
2036 |
< |
if( !have_n_components ){ |
2037 |
< |
strcat( err, "\t\t->nComponents\n" ); |
2038 |
< |
have_err= 1; |
2039 |
< |
} |
2040 |
< |
|
2041 |
< |
|
2042 |
< |
if ( !have_ensemble ) { |
2043 |
< |
// I'm not doing MD: |
2044 |
< |
if ( !have_minimizer ) { |
2045 |
< |
// I'm not doing MD or minimization: |
2046 |
< |
strcat( err, "\t\t->either ensemble or minimizer must be set!\n" ); |
2047 |
< |
have_err = 1; |
2048 |
< |
} else { |
2049 |
< |
// I'm a minimizer: |
2050 |
< |
} |
2051 |
< |
} else { |
2052 |
< |
// I *am* doing MD: |
2053 |
< |
if( !have_dt ){ |
2054 |
< |
strcat( err, "\t\t->dt (timestep in fs)\n" ); |
2055 |
< |
have_err= 1; |
2056 |
< |
} |
2057 |
< |
if( !have_run_time ){ |
2058 |
< |
strcat( err, "\t\t->runTime (total run time in fs)\n" ); |
2059 |
< |
have_err= 1; |
2060 |
< |
} |
2061 |
< |
} |
2062 |
< |
|
2063 |
< |
if( have_err ) return strdup( err ); |
2064 |
< |
|
2065 |
< |
return NULL; |
2066 |
< |
} |
2067 |
< |
|
2068 |
< |
int Globals::globalEnd( event* the_event ){ |
2069 |
< |
|
2070 |
< |
the_event->err_msg = checkMe(); |
2071 |
< |
if( the_event->err_msg != NULL ) return 0; |
2072 |
< |
|
2073 |
< |
return 1; |
2074 |
< |
} |
2075 |
< |
|
2 |
> |
* Copyright (c) 2005, 2010 The University of Notre Dame. All Rights Reserved. |
3 |
> |
* |
4 |
> |
* The University of Notre Dame grants you ("Licensee") a |
5 |
> |
* non-exclusive, royalty free, license to use, modify and |
6 |
> |
* redistribute this software in source and binary code form, provided |
7 |
> |
* that the following conditions are met: |
8 |
> |
* |
9 |
> |
* 1. Redistributions of source code must retain the above copyright |
10 |
> |
* notice, this list of conditions and the following disclaimer. |
11 |
> |
* |
12 |
> |
* 2. Redistributions in binary form must reproduce the above copyright |
13 |
> |
* notice, this list of conditions and the following disclaimer in the |
14 |
> |
* documentation and/or other materials provided with the |
15 |
> |
* distribution. |
16 |
> |
* |
17 |
> |
* This software is provided "AS IS," without a warranty of any |
18 |
> |
* kind. All express or implied conditions, representations and |
19 |
> |
* warranties, including any implied warranty of merchantability, |
20 |
> |
* fitness for a particular purpose or non-infringement, are hereby |
21 |
> |
* excluded. The University of Notre Dame and its licensors shall not |
22 |
> |
* be liable for any damages suffered by licensee as a result of |
23 |
> |
* using, modifying or distributing the software or its |
24 |
> |
* derivatives. In no event will the University of Notre Dame or its |
25 |
> |
* licensors be liable for any lost revenue, profit or data, or for |
26 |
> |
* direct, indirect, special, consequential, incidental or punitive |
27 |
> |
* damages, however caused and regardless of the theory of liability, |
28 |
> |
* arising out of the use of or inability to use software, even if the |
29 |
> |
* University of Notre Dame has been advised of the possibility of |
30 |
> |
* such damages. |
31 |
> |
* |
32 |
> |
* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
33 |
> |
* research, please cite the appropriate papers when you publish your |
34 |
> |
* work. Good starting points are: |
35 |
> |
* |
36 |
> |
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
37 |
> |
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
38 |
> |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
39 |
> |
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
40 |
> |
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
41 |
> |
*/ |
42 |
> |
|
43 |
> |
#include <stdlib.h> |
44 |
> |
#include <stdio.h> |
45 |
> |
#include <string.h> |
46 |
> |
#include <string> |
47 |
> |
|
48 |
> |
#include "io/Globals.hpp" |
49 |
> |
#include "io/ParamConstraint.hpp" |
50 |
> |
#include "utils/MemoryUtils.hpp" |
51 |
> |
#include "utils/simError.h" |
52 |
> |
|
53 |
> |
namespace OpenMD { |
54 |
> |
Globals::Globals() { |
55 |
> |
DefineParameter(ForceField, "forceField") |
56 |
> |
|
57 |
> |
DefineOptionalParameter(TargetTemp, "targetTemp"); |
58 |
> |
DefineOptionalParameter(Ensemble, "ensemble"); |
59 |
> |
DefineOptionalParameter(Dt, "dt"); |
60 |
> |
DefineOptionalParameter(RunTime, "runTime"); |
61 |
> |
DefineOptionalParameter(FinalConfig, "finalConfig"); |
62 |
> |
DefineOptionalParameter(SampleTime, "sampleTime"); |
63 |
> |
DefineOptionalParameter(ResetTime, "resetTime"); |
64 |
> |
DefineOptionalParameter(StatusTime, "statusTime"); |
65 |
> |
DefineOptionalParameter(CutoffRadius, "cutoffRadius"); |
66 |
> |
DefineOptionalParameter(SwitchingRadius, "switchingRadius"); |
67 |
> |
DefineOptionalParameter(TempSet, "tempSet"); |
68 |
> |
DefineOptionalParameter(ThermalTime, "thermalTime"); |
69 |
> |
DefineOptionalParameter(TargetPressure, "targetPressure"); |
70 |
> |
DefineOptionalParameter(TauThermostat, "tauThermostat"); |
71 |
> |
DefineOptionalParameter(TauBarostat, "tauBarostat"); |
72 |
> |
DefineOptionalParameter(ZconsTime, "zconsTime"); |
73 |
> |
DefineOptionalParameter(ZconsTol, "zconsTol"); |
74 |
> |
DefineOptionalParameter(ZconsForcePolicy, "zconsForcePolicy"); |
75 |
> |
DefineOptionalParameter(Seed, "seed"); |
76 |
> |
DefineOptionalParameter(Minimizer, "minimizer"); |
77 |
> |
DefineOptionalParameter(MinimizerMaxIter,"minimizerMaxIter"); |
78 |
> |
DefineOptionalParameter(MinimizerWriteFreq, "minimizerWriteFreq"); |
79 |
> |
DefineOptionalParameter(MinimizerStepSize, "minimizerStepSize"); |
80 |
> |
DefineOptionalParameter(MinimizerFTol, "minimizerFTol"); |
81 |
> |
DefineOptionalParameter(MinimizerGTol, "minimizerGTol"); |
82 |
> |
DefineOptionalParameter(MinimizerLSTol, "minimizerLSTol"); |
83 |
> |
DefineOptionalParameter(MinimizerLSMaxIter, "minimizerLSMaxIter"); |
84 |
> |
DefineOptionalParameter(ZconsGap, "zconsGap"); |
85 |
> |
DefineOptionalParameter(ZconsFixtime, "zconsFixtime"); |
86 |
> |
DefineOptionalParameter(ZconsUsingSMD, "zconsUsingSMD"); |
87 |
> |
DefineOptionalParameter(ThermodynamicIntegrationLambda, "thermodynamicIntegrationLambda"); |
88 |
> |
DefineOptionalParameter(ThermodynamicIntegrationK, "thermodynamicIntegrationK"); |
89 |
> |
DefineOptionalParameter(ForceFieldVariant, "forceFieldVariant"); |
90 |
> |
DefineOptionalParameter(ForceFieldFileName, "forceFieldFileName"); |
91 |
> |
DefineOptionalParameter(DampingAlpha, "dampingAlpha"); |
92 |
> |
DefineOptionalParameter(SurfaceTension, "surfaceTension"); |
93 |
> |
DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); |
94 |
> |
DefineOptionalParameter(PrintHeatFlux, "printHeatFlux"); |
95 |
> |
DefineOptionalParameter(TaggedAtomPair, "taggedAtomPair"); |
96 |
> |
DefineOptionalParameter(PrintTaggedPairDistance, "printTaggedPairDistance"); |
97 |
> |
DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
98 |
> |
DefineOptionalParameter(HydroPropFile, "HydroPropFile"); |
99 |
> |
DefineOptionalParameter(Viscosity, "viscosity"); |
100 |
> |
DefineOptionalParameter(BeadSize, "beadSize"); |
101 |
> |
DefineOptionalParameter(FrozenBufferRadius, "frozenBufferRadius"); |
102 |
> |
DefineOptionalParameter(LangevinBufferRadius, "langevinBufferRadius"); |
103 |
> |
DefineOptionalParameter(NeighborListNeighbors,"NeighborListNeighbors"); |
104 |
> |
DefineOptionalParameter(UseMultipleTemperatureMethod, "useMultipleTemperatureMethod"); |
105 |
> |
DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
106 |
> |
DefineOptionalParameter(MTM_Ce, "MTM_Ce"); |
107 |
> |
DefineOptionalParameter(MTM_G, "MTM_G"); |
108 |
> |
DefineOptionalParameter(MTM_Io, "MTM_Io"); |
109 |
> |
DefineOptionalParameter(MTM_Sigma, "MTM_Sigma"); |
110 |
> |
DefineOptionalParameter(MTM_R, "MTM_R"); |
111 |
> |
DefineOptionalParameter(Alpha, "alpha"); |
112 |
> |
|
113 |
> |
|
114 |
> |
DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
115 |
> |
DefineOptionalParameterWithDefaultValue(UseAtomicVirial, "useAtomicVirial", true); |
116 |
> |
DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); |
117 |
> |
DefineOptionalParameterWithDefaultValue(UseIntialExtendedSystemState, "useInitialExtendedSystemState", false); |
118 |
> |
DefineOptionalParameterWithDefaultValue(OrthoBoxTolerance, "orthoBoxTolerance", 1E-6); |
119 |
> |
DefineOptionalParameterWithDefaultValue(CutoffMethod, "cutoffMethod", "SHIFTED_FORCE"); |
120 |
> |
DefineOptionalParameterWithDefaultValue(ElectrostaticScreeningMethod, "electrostaticScreeningMethod", "DAMPED"); |
121 |
> |
DefineOptionalParameterWithDefaultValue(Dielectric, "dielectric", 80.0); |
122 |
> |
DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", false); |
123 |
> |
DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", false); |
124 |
> |
DefineOptionalParameterWithDefaultValue(OutputParticlePotential, "outputParticlePotential", false); |
125 |
> |
DefineOptionalParameterWithDefaultValue(OutputElectricField, "outputElectricField", false); |
126 |
> |
DefineOptionalParameterWithDefaultValue(OutputFluctuatingCharges, "outputFluctuatingCharges", false); |
127 |
> |
DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
128 |
> |
DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
129 |
> |
DefineOptionalParameterWithDefaultValue(UseSphericalBoundaryConditions, "useSphericalBoundaryConditions", false); |
130 |
> |
DefineOptionalParameterWithDefaultValue(AccumulateBoxDipole, "accumulateBoxDipole", false); |
131 |
> |
|
132 |
> |
DefineOptionalParameterWithDefaultValue(UseRNEMD, "useRNEMD", false); |
133 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_exchangeTime, "RNEMD_exchangeTime", 100.0); |
134 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_nBins, "RNEMD_nBins", 16); |
135 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_logWidth, "RNEMD_logWidth", 16); |
136 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_exchangeType, "RNEMD_exchangeType", "KineticScale"); |
137 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_targetFlux, "RNEMD_targetFlux", 0.0); |
138 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_targetJzKE, "RNEMD_targetJzKE", 0.0); |
139 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_targetJzpx, "RNEMD_targetJzpx", 0.0); |
140 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_targetJzpy, "RNEMD_targetJzpy", 0.0); |
141 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_targetJzpz, "RNEMD_targetJzpz", 0.0); |
142 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_objectSelection, "RNEMD_objectSelection", "select all"); |
143 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_binShift, "RNEMD_binShift", false); |
144 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputTemperature, "RNEMD_outputTemperature", false); |
145 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputVx, "RNEMD_outputVx", false); |
146 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputVy, "RNEMD_outputVy", false); |
147 |
> |
// James put this in. |
148 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputDen, "RNEMD_outputDen", false); |
149 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputAh, "RNEMD_outputAh", false); |
150 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputVz, "RNEMD_outputVz", false); |
151 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputXyzTemperature, "RNEMD_outputXyzTemperature", false); |
152 |
> |
DefineOptionalParameterWithDefaultValue(RNEMD_outputRotTemperature, "RNEMD_outputRotTemperature", false); |
153 |
> |
|
154 |
> |
DefineOptionalParameterWithDefaultValue(UseRestraints, "useRestraints", false); |
155 |
> |
DefineOptionalParameterWithDefaultValue(Restraint_file, "Restraint_file", "idealCrystal.in"); |
156 |
> |
DefineOptionalParameterWithDefaultValue(UseThermodynamicIntegration, "useThermodynamicIntegration", false); |
157 |
> |
DefineOptionalParameterWithDefaultValue(HULL_Method,"HULL_Method","Convex"); |
158 |
> |
DefineOptionalParameterWithDefaultValue(FlucQPropagator, "flucQ.propagator", "NVT"); |
159 |
> |
DefineOptionalParameterWithDefaultValue(FlucQFriction, "flucQ.friction", 1600.0); |
160 |
> |
DefineOptionalParameterWithDefaultValue(FlucQTolerance, "flucQ.tolerance", 1.0e-6); |
161 |
> |
DefineOptionalParameterWithDefaultValue(FlucQMaxIterations, "flucQ.maxIterations", 100); |
162 |
> |
DefineOptionalParameterWithDefaultValue(FlucQTargetTemp, "flucQ.targetTemp", 1.0e-6); |
163 |
> |
DefineOptionalParameterWithDefaultValue(FlucQtauThermostat, "flucQ.tauThermostat", 10.0); |
164 |
> |
|
165 |
> |
deprecatedKeywords_.insert("nComponents"); |
166 |
> |
deprecatedKeywords_.insert("nZconstraints"); |
167 |
> |
deprecatedKeywords_.insert("initialConfig"); |
168 |
> |
deprecatedKeywords_.insert("thermIntDistSpringConst"); |
169 |
> |
deprecatedKeywords_.insert("thermIntThetaSpringConst"); |
170 |
> |
deprecatedKeywords_.insert("thermIntOmegaSpringConst"); |
171 |
> |
deprecatedKeywords_.insert("useSolidThermInt"); |
172 |
> |
deprecatedKeywords_.insert("useLiquidThermInt"); |
173 |
> |
|
174 |
> |
} |
175 |
> |
|
176 |
> |
Globals::~Globals() { |
177 |
> |
MemoryUtils::deletePointers(components_); |
178 |
> |
MemoryUtils::deletePointers(zconstraints_); |
179 |
> |
MemoryUtils::deletePointers(restraints_); |
180 |
> |
} |
181 |
> |
|
182 |
> |
void Globals::validate() { |
183 |
> |
DataHolder::validate(); |
184 |
> |
|
185 |
> |
CheckParameter(ForceField, isNotEmpty()); |
186 |
> |
CheckParameter(TargetTemp, isPositive()); |
187 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPTsz") || isEqualIgnoreCase("NPAT") || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT") || isEqualIgnoreCase("LANGEVINHULL") || isEqualIgnoreCase("LHULL") || isEqualIgnoreCase("SMIPD")); |
188 |
> |
CheckParameter(Dt, isPositive()); |
189 |
> |
CheckParameter(RunTime, isPositive()); |
190 |
> |
CheckParameter(FinalConfig, isNotEmpty()); |
191 |
> |
CheckParameter(SampleTime, isNonNegative()); |
192 |
> |
CheckParameter(ResetTime, isNonNegative()); |
193 |
> |
CheckParameter(StatusTime, isNonNegative()); |
194 |
> |
CheckParameter(CutoffRadius, isPositive()); |
195 |
> |
CheckParameter(SwitchingRadius, isNonNegative()); |
196 |
> |
CheckParameter(Dielectric, isPositive()); |
197 |
> |
CheckParameter(ThermalTime, isNonNegative()); |
198 |
> |
CheckParameter(TauThermostat, isPositive()); |
199 |
> |
CheckParameter(TauBarostat, isPositive()); |
200 |
> |
CheckParameter(ZconsTime, isPositive()); |
201 |
> |
CheckParameter(ZconsTol, isPositive()); |
202 |
> |
CheckParameter(Seed, isPositive()); |
203 |
> |
CheckParameter(Minimizer, isEqualIgnoreCase("SD") || isEqualIgnoreCase("CG")); |
204 |
> |
CheckParameter(MinimizerMaxIter, isPositive()); |
205 |
> |
CheckParameter(MinimizerWriteFreq, isPositive()); |
206 |
> |
CheckParameter(MinimizerStepSize, isPositive()); |
207 |
> |
CheckParameter(MinimizerFTol, isPositive()); |
208 |
> |
CheckParameter(MinimizerGTol, isPositive()); |
209 |
> |
CheckParameter(MinimizerLSTol, isPositive()); |
210 |
> |
CheckParameter(MinimizerLSMaxIter, isPositive()); |
211 |
> |
CheckParameter(ZconsGap, isPositive()); |
212 |
> |
CheckParameter(ZconsFixtime, isPositive()); |
213 |
> |
CheckParameter(ThermodynamicIntegrationLambda, isNonNegative()); |
214 |
> |
CheckParameter(ThermodynamicIntegrationK, isPositive()); |
215 |
> |
CheckParameter(ForceFieldVariant, isNotEmpty()); |
216 |
> |
CheckParameter(ForceFieldFileName, isNotEmpty()); |
217 |
> |
CheckParameter(CutoffMethod, isEqualIgnoreCase("HARD") || isEqualIgnoreCase("SWITCHED") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE")); |
218 |
> |
CheckParameter(CutoffPolicy, isEqualIgnoreCase("MIX") || isEqualIgnoreCase("MAX") || isEqualIgnoreCase("TRADITIONAL")); |
219 |
> |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase("NONE") || isEqualIgnoreCase("HARD") || isEqualIgnoreCase("SWITCHED") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE") || isEqualIgnoreCase("REACTION_FIELD")); |
220 |
> |
CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase("UNDAMPED") || isEqualIgnoreCase("DAMPED")); |
221 |
> |
CheckParameter(SwitchingFunctionType, isEqualIgnoreCase("CUBIC") || isEqualIgnoreCase("FIFTH_ORDER_POLYNOMIAL")); |
222 |
> |
CheckParameter(OrthoBoxTolerance, isPositive()); |
223 |
> |
CheckParameter(DampingAlpha,isNonNegative()); |
224 |
> |
CheckParameter(SkinThickness, isPositive()); |
225 |
> |
CheckParameter(Viscosity, isNonNegative()); |
226 |
> |
CheckParameter(BeadSize, isPositive()); |
227 |
> |
CheckParameter(FrozenBufferRadius, isPositive()); |
228 |
> |
CheckParameter(LangevinBufferRadius, isPositive()); |
229 |
> |
CheckParameter(NeighborListNeighbors, isPositive()); |
230 |
> |
CheckParameter(RNEMD_exchangeTime, isPositive()); |
231 |
> |
CheckParameter(RNEMD_nBins, isPositive() && isEven()); |
232 |
> |
CheckParameter(RNEMD_exchangeType, isEqualIgnoreCase("KineticSwap") || isEqualIgnoreCase("KineticScale") || isEqualIgnoreCase("KineticScaleVAM") || isEqualIgnoreCase("KineticScaleAM") || isEqualIgnoreCase("Px") || isEqualIgnoreCase("Py") || isEqualIgnoreCase("Pz") || isEqualIgnoreCase("PxScale") || isEqualIgnoreCase("PyScale") || isEqualIgnoreCase("PzScale") || isEqualIgnoreCase("ShiftScaleV") || isEqualIgnoreCase("ShiftScaleVAM")); |
233 |
> |
CheckParameter(HULL_Method, isEqualIgnoreCase("Convex") || isEqualIgnoreCase("AlphaShape")); |
234 |
> |
CheckParameter(Alpha, isPositive()); |
235 |
> |
CheckParameter(FlucQPropagator, isEqualIgnoreCase("NVT") || isEqualIgnoreCase("Langevin") || isEqualIgnoreCase("Minimizer") || isEqualIgnoreCase("Exact") ); |
236 |
> |
CheckParameter(FlucQFriction, isNonNegative()); |
237 |
> |
CheckParameter(FlucQTolerance, isPositive()); |
238 |
> |
CheckParameter(FlucQMaxIterations, isPositive()); |
239 |
> |
CheckParameter(FlucQTargetTemp, isNonNegative()); |
240 |
> |
CheckParameter(FlucQtauThermostat, isPositive()); |
241 |
> |
|
242 |
> |
for(std::vector<Component*>::iterator i = components_.begin(); i != components_.end(); ++i) { |
243 |
> |
if (!(*i)->findMoleculeStamp(moleculeStamps_)) { |
244 |
> |
std::ostringstream oss; |
245 |
> |
oss << "Globals Error: can not find molecule stamp for component " << (*i)->getType() << std::endl; |
246 |
> |
throw OpenMDException(oss.str()); |
247 |
> |
} |
248 |
> |
} |
249 |
> |
} |
250 |
> |
|
251 |
> |
bool Globals::addComponent(Component* comp) { |
252 |
> |
components_.push_back(comp); |
253 |
> |
return true; |
254 |
> |
} |
255 |
> |
|
256 |
> |
bool Globals::addZConsStamp(ZConsStamp* zcons) { |
257 |
> |
zconstraints_.push_back(zcons); |
258 |
> |
return true; |
259 |
> |
} |
260 |
> |
|
261 |
> |
bool Globals::addRestraintStamp(RestraintStamp* rest) { |
262 |
> |
restraints_.push_back(rest); |
263 |
> |
return true; |
264 |
> |
} |
265 |
> |
|
266 |
> |
bool Globals::addMoleculeStamp(MoleculeStamp* molStamp) { |
267 |
> |
std::string molStampName = molStamp->getName(); |
268 |
> |
std::map<std::string, MoleculeStamp*>::iterator i; |
269 |
> |
bool ret = false; |
270 |
> |
i = moleculeStamps_.find(molStampName); |
271 |
> |
if (i == moleculeStamps_.end()) { |
272 |
> |
moleculeStamps_.insert(std::map<std::string, MoleculeStamp*>::value_type(molStampName, molStamp)); |
273 |
> |
ret = true; |
274 |
> |
} else { |
275 |
> |
std::ostringstream oss; |
276 |
> |
oss << "Globals Error: Molecule Stamp " << molStamp->getName() << "appears multiple times\n"; |
277 |
> |
throw OpenMDException(oss.str()); |
278 |
> |
} |
279 |
> |
return ret; |
280 |
> |
} |
281 |
> |
|
282 |
> |
|
283 |
> |
} |