121 |
|
DefineOptionalParameter(SurfaceTension, "surfaceTension"); |
122 |
|
DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); |
123 |
|
DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
124 |
< |
DefineOptionalParameter(ScreeningMethod, "screeningMethod"); |
124 |
> |
DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); |
125 |
|
DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
126 |
< |
|
126 |
> |
DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
127 |
|
DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
128 |
|
DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
129 |
|
DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); |
134 |
|
DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); |
135 |
|
DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); |
136 |
|
DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); |
137 |
< |
DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 1.5); |
137 |
> |
DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); |
138 |
|
DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
139 |
+ |
DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); |
140 |
|
DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
141 |
|
DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
142 |
|
|
341 |
|
CheckParameter(ForceField, isNotEmpty()); |
342 |
|
CheckParameter(NComponents,isPositive()); |
343 |
|
CheckParameter(TargetTemp, isPositive()); |
344 |
< |
CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || |
345 |
< |
isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))|| |
346 |
< |
isEqualIgnoreCase(std::string("NPTxyz")) ); |
344 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || |
345 |
> |
isEqualIgnoreCase(std::string("NVT")) || |
346 |
> |
isEqualIgnoreCase(std::string("NPTi")) || |
347 |
> |
isEqualIgnoreCase(std::string("NPTf")) || |
348 |
> |
isEqualIgnoreCase(std::string("NPTxyz")) ); |
349 |
|
CheckParameter(Dt, isPositive()); |
350 |
|
CheckParameter(RunTime, isPositive()); |
351 |
|
CheckParameter(InitialConfig, isNotEmpty()); |
371 |
|
CheckParameter(ZconsTol, isPositive()); |
372 |
|
//CheckParameter(ZconsForcePolicy,); |
373 |
|
CheckParameter(Seed, isPositive()); |
374 |
< |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
374 |
> |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || |
375 |
> |
isEqualIgnoreCase(std::string("CG"))); |
376 |
|
CheckParameter(MinimizerMaxIter, isPositive()); |
377 |
|
CheckParameter(MinimizerWriteFrq, isPositive()); |
378 |
|
CheckParameter(MinimizerStepSize, isPositive()); |
390 |
|
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
391 |
|
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
392 |
|
CheckParameter(SurfaceTension, isPositive()); |
393 |
< |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
394 |
< |
CheckParameter(ScreeningMethod, isEqualIgnoreCase(std::string("UNDAMPED")) || isEqualIgnoreCase(std::string("DAMPED"))); |
395 |
< |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
393 |
> |
CheckParameter(ElectrostaticSummationMethod, |
394 |
> |
isEqualIgnoreCase(std::string("NONE")) || |
395 |
> |
isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || |
396 |
> |
isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || |
397 |
> |
isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
398 |
> |
CheckParameter(ElectrostaticScreeningMethod, |
399 |
> |
isEqualIgnoreCase(std::string("UNDAMPED")) || |
400 |
> |
isEqualIgnoreCase(std::string("DAMPED"))); |
401 |
> |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || |
402 |
> |
isEqualIgnoreCase(std::string("MAX")) || |
403 |
> |
isEqualIgnoreCase(std::string("TRADITIONAL"))); |
404 |
> |
CheckParameter(SwitchingFunctionType, |
405 |
> |
isEqualIgnoreCase(std::string("CUBIC")) || |
406 |
> |
isEqualIgnoreCase(std::string("FIFTH_ORDER_POLYNOMIAL"))); |
407 |
|
//CheckParameter(StatFileFormat,); |
408 |
|
//CheckParameter(MixingRule,); |
409 |
|
CheckParameter(OrthoBoxTolerance, isPositive()); |
410 |
|
CheckParameter(ThermIntDistSpringConst, isPositive()); |
411 |
|
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
412 |
|
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
413 |
< |
CheckParameter(DampingAlpha,isPositive()); |
413 |
> |
CheckParameter(DampingAlpha,isNonNegative()); |
414 |
|
CheckParameter(SkinThickness, isPositive()); |
415 |
|
|
416 |
|
//@todo memory leak |