65 |
|
parameters_.insert(std::make_pair(std::string(KEYWORD), &NAME)); |
66 |
|
|
67 |
|
#define CheckParameter(NAME, CONSTRAINT) \ |
68 |
< |
if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) std::cout <<"Error in parsing " << NAME.getKeyword() << " : "<< (CONSTRAINT).getConstraintDescription() << std::endl; } |
68 |
> |
if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) { sprintf(painCave.errMsg,"Error in checking %s : should be %s\n",NAME.getKeyword().c_str(),(CONSTRAINT).getConstraintDescription().c_str()); painCave.isFatal = 1; painCave.severity = OOPSE_ERROR; simError();} } |
69 |
|
|
70 |
– |
|
70 |
|
Globals::Globals(){ |
71 |
|
|
72 |
|
DefineParameter(ForceField, "forceField") |
121 |
|
DefineOptionalParameter(SurfaceTension, "surfaceTension"); |
122 |
|
DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); |
123 |
|
DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
124 |
+ |
DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); |
125 |
|
DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
126 |
< |
DefineOptionalParameter(StatFileFormat, "statFileFormat"); |
127 |
< |
|
126 |
> |
DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
127 |
|
DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
128 |
|
DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
129 |
|
DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); |
134 |
|
DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); |
135 |
|
DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); |
136 |
|
DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); |
137 |
< |
DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 1.5); |
137 |
> |
DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); |
138 |
|
DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
139 |
+ |
DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); |
140 |
|
DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
141 |
+ |
DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
142 |
+ |
|
143 |
|
|
144 |
|
} |
145 |
|
|
146 |
|
int Globals::globalAssign( event* the_event ){ |
147 |
< |
|
147 |
> |
char errorMessage[65535]; |
148 |
|
int key; |
147 |
– |
int token; |
149 |
|
interface_assign_type the_type = the_event->evt.asmt.asmt_type; |
150 |
|
char* lhs = the_event->evt.asmt.lhs; |
151 |
|
std::string keyword(lhs); |
152 |
|
|
153 |
< |
bool result; |
153 |
> |
bool result = false; |
154 |
|
|
155 |
< |
|
155 |
> |
/**@todo fix memory leak */ |
156 |
|
ParamMap::iterator i =parameters_.find(keyword); |
157 |
|
if (i != parameters_.end()) { |
158 |
|
if( the_type == STRING ){ |
159 |
|
result = i->second->setData(std::string(the_event->evt.asmt.rhs.sval)); |
160 |
|
if (!result ) { |
161 |
< |
sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a string.\n", keyword.c_str() ); |
161 |
> |
sprintf(errorMessage, "Error in parsing %s: expect %s, but get a string \"%s\".\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.sval); |
162 |
> |
the_event->err_msg = strdup(errorMessage); |
163 |
|
} |
164 |
|
} else if( the_type == DOUBLE ){ |
165 |
|
result = i->second->setData(the_event->evt.asmt.rhs.dval); |
166 |
|
if (!result ) |
167 |
< |
sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a double.\n", keyword.c_str() ); |
167 |
> |
sprintf(errorMessage, "Error in parsing %s: expect %s, but get a double %f.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.dval ); |
168 |
> |
the_event->err_msg = strdup(errorMessage); |
169 |
|
} |
170 |
|
else if (the_type == INT ){ |
171 |
|
result = i->second->setData(the_event->evt.asmt.rhs.ival); |
172 |
|
if (!result ) |
173 |
< |
sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be an int.\n", keyword.c_str() ); |
173 |
> |
sprintf(errorMessage, "Error in parsing %s: expect %s, but get an int %d.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.ival ); |
174 |
> |
the_event->err_msg = strdup(errorMessage); |
175 |
|
|
176 |
|
} else { |
177 |
< |
|
177 |
> |
sprintf(errorMessage, "Internal error of parser\n"); |
178 |
> |
the_event->err_msg = strdup(errorMessage); |
179 |
|
} |
180 |
+ |
} else { |
181 |
+ |
sprintf(errorMessage, "%s is an unrecognized keyword\n", keyword.c_str() ); |
182 |
+ |
the_event->err_msg = strdup(errorMessage); |
183 |
|
} |
184 |
|
|
185 |
|
if (keyword == "nComponents" && getNComponents() > 0) { |
341 |
|
CheckParameter(ForceField, isNotEmpty()); |
342 |
|
CheckParameter(NComponents,isPositive()); |
343 |
|
CheckParameter(TargetTemp, isPositive()); |
344 |
< |
CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || |
345 |
< |
isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))|| |
346 |
< |
isEqualIgnoreCase(std::string("NPTxyz")) ); |
347 |
< |
|
344 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || |
345 |
> |
isEqualIgnoreCase(std::string("NVT")) || |
346 |
> |
isEqualIgnoreCase(std::string("NPTi")) || |
347 |
> |
isEqualIgnoreCase(std::string("NPTf")) || |
348 |
> |
isEqualIgnoreCase(std::string("NPTxyz")) ); |
349 |
|
CheckParameter(Dt, isPositive()); |
350 |
|
CheckParameter(RunTime, isPositive()); |
351 |
|
CheckParameter(InitialConfig, isNotEmpty()); |
371 |
|
CheckParameter(ZconsTol, isPositive()); |
372 |
|
//CheckParameter(ZconsForcePolicy,); |
373 |
|
CheckParameter(Seed, isPositive()); |
374 |
< |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
374 |
> |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || |
375 |
> |
isEqualIgnoreCase(std::string("CG"))); |
376 |
|
CheckParameter(MinimizerMaxIter, isPositive()); |
377 |
|
CheckParameter(MinimizerWriteFrq, isPositive()); |
378 |
|
CheckParameter(MinimizerStepSize, isPositive()); |
390 |
|
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
391 |
|
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
392 |
|
CheckParameter(SurfaceTension, isPositive()); |
393 |
< |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("UNDAMPED_WOLF")) || isEqualIgnoreCase(std::string("DAMPED_WOLF")) || isEqualIgnoreCase(std::string("REACTION_FIELD")) ); |
394 |
< |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
393 |
> |
CheckParameter(ElectrostaticSummationMethod, |
394 |
> |
isEqualIgnoreCase(std::string("NONE")) || |
395 |
> |
isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || |
396 |
> |
isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || |
397 |
> |
isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
398 |
> |
CheckParameter(ElectrostaticScreeningMethod, |
399 |
> |
isEqualIgnoreCase(std::string("UNDAMPED")) || |
400 |
> |
isEqualIgnoreCase(std::string("DAMPED"))); |
401 |
> |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || |
402 |
> |
isEqualIgnoreCase(std::string("MAX")) || |
403 |
> |
isEqualIgnoreCase(std::string("TRADITIONAL"))); |
404 |
> |
CheckParameter(SwitchingFunctionType, |
405 |
> |
isEqualIgnoreCase(std::string("CUBIC")) || |
406 |
> |
isEqualIgnoreCase(std::string("FIFTH_ORDER_POLYNOMIAL"))); |
407 |
|
//CheckParameter(StatFileFormat,); |
408 |
|
//CheckParameter(MixingRule,); |
409 |
|
CheckParameter(OrthoBoxTolerance, isPositive()); |
410 |
|
CheckParameter(ThermIntDistSpringConst, isPositive()); |
411 |
|
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
412 |
|
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
413 |
< |
CheckParameter(DampingAlpha,isPositive()); |
413 |
> |
CheckParameter(DampingAlpha,isNonNegative()); |
414 |
|
CheckParameter(SkinThickness, isPositive()); |
415 |
|
|
416 |
|
//@todo memory leak |