1 |
gezelter |
246 |
/* |
2 |
|
|
* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
3 |
|
|
* |
4 |
|
|
* The University of Notre Dame grants you ("Licensee") a |
5 |
|
|
* non-exclusive, royalty free, license to use, modify and |
6 |
|
|
* redistribute this software in source and binary code form, provided |
7 |
|
|
* that the following conditions are met: |
8 |
|
|
* |
9 |
|
|
* 1. Acknowledgement of the program authors must be made in any |
10 |
|
|
* publication of scientific results based in part on use of the |
11 |
|
|
* program. An acceptable form of acknowledgement is citation of |
12 |
|
|
* the article in which the program was described (Matthew |
13 |
|
|
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
14 |
|
|
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
15 |
|
|
* Parallel Simulation Engine for Molecular Dynamics," |
16 |
|
|
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
17 |
|
|
* |
18 |
|
|
* 2. Redistributions of source code must retain the above copyright |
19 |
|
|
* notice, this list of conditions and the following disclaimer. |
20 |
|
|
* |
21 |
|
|
* 3. Redistributions in binary form must reproduce the above copyright |
22 |
|
|
* notice, this list of conditions and the following disclaimer in the |
23 |
|
|
* documentation and/or other materials provided with the |
24 |
|
|
* distribution. |
25 |
|
|
* |
26 |
|
|
* This software is provided "AS IS," without a warranty of any |
27 |
|
|
* kind. All express or implied conditions, representations and |
28 |
|
|
* warranties, including any implied warranty of merchantability, |
29 |
|
|
* fitness for a particular purpose or non-infringement, are hereby |
30 |
|
|
* excluded. The University of Notre Dame and its licensors shall not |
31 |
|
|
* be liable for any damages suffered by licensee as a result of |
32 |
|
|
* using, modifying or distributing the software or its |
33 |
|
|
* derivatives. In no event will the University of Notre Dame or its |
34 |
|
|
* licensors be liable for any lost revenue, profit or data, or for |
35 |
|
|
* direct, indirect, special, consequential, incidental or punitive |
36 |
|
|
* damages, however caused and regardless of the theory of liability, |
37 |
|
|
* arising out of the use of or inability to use software, even if the |
38 |
|
|
* University of Notre Dame has been advised of the possibility of |
39 |
|
|
* such damages. |
40 |
|
|
*/ |
41 |
|
|
|
42 |
|
|
#ifndef IO_DUMPWRITER_HPP |
43 |
|
|
#define IO_DUMPWRITER_HPP |
44 |
|
|
|
45 |
|
|
#define _LARGEFILE_SOURCE64 |
46 |
|
|
#ifndef _FILE_OFFSET_BITS |
47 |
|
|
#define _FILE_OFFSET_BITS 64 |
48 |
|
|
#endif |
49 |
|
|
#include <iostream> |
50 |
|
|
#include <fstream> |
51 |
|
|
#include <string> |
52 |
|
|
#include <string.h> |
53 |
|
|
#include <stdio.h> |
54 |
|
|
#include <stdlib.h> |
55 |
|
|
#include <unistd.h> |
56 |
|
|
#include <sys/types.h> |
57 |
|
|
#include <sys/stat.h> |
58 |
|
|
|
59 |
|
|
#include "primitives/Atom.hpp" |
60 |
|
|
#include "brains/SimInfo.hpp" |
61 |
|
|
#include "brains/Thermo.hpp" |
62 |
|
|
#include "primitives/StuntDouble.hpp" |
63 |
|
|
|
64 |
|
|
namespace oopse { |
65 |
|
|
|
66 |
|
|
/** |
67 |
|
|
* @class DumpWriter DumpWriter.hpp "io/DumpWriter.hpp" |
68 |
|
|
* @todo |
69 |
|
|
*/ |
70 |
|
|
class DumpWriter{ |
71 |
|
|
|
72 |
|
|
public: |
73 |
|
|
DumpWriter(SimInfo* info, const std::string& filename); |
74 |
|
|
~DumpWriter(); |
75 |
|
|
|
76 |
|
|
void writeDump() { |
77 |
|
|
writeFrame(dumpFile_); |
78 |
|
|
} |
79 |
|
|
|
80 |
|
|
private: |
81 |
|
|
void writeFrame(std::ostream& os); |
82 |
|
|
void writeCommentLine(std::ostream& os, Snapshot* s); |
83 |
|
|
SimInfo* info_; |
84 |
|
|
std::string filename_; |
85 |
|
|
std::ofstream dumpFile_; |
86 |
|
|
|
87 |
|
|
}; |
88 |
|
|
|
89 |
|
|
} |
90 |
|
|
#endif //#define IO_DUMPWRITER_HPP |