Some bugfixes (CholeskyDecomposition), more work on fluctuating charges, migrating stats stuff into frameData
Reorganized source directories, added RNEMD and flucQ blocks for options parsing.
Adding more support structure for Fluctuating Charges.
updated copyright notices
Creating busticated version of OpenMD
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
added RNEMD scaling
Added new restraint infrastructure Added MolecularRestraints Added ObjectRestraints Added RestraintStamp Updated thermodynamic integration to use ObjectRestraints Added Quaternion mathematics for twist swing decompositions Significantly updated RestWriter and RestReader to use dump-like files Added selections for x, y, and z coordinates of atoms Removed monolithic Restraints class Fixed a few bugs in gradients of Euler angles in DirectionalAtom and RigidBody Added some rotational capabilities to prinicpalAxisCalculator
Adding RNEMD
Adding single precision capabilities to c++ side
adding resetIntegrator
xemacs has been drafted to perform our indentation services
First commit of the new restraints code
dynamicProps get built
forget to add eorWriter
merging new_design branch into OOPSE-2.0
Improvements to restraints
change the #include in source files
Import of OOPSE v. 2.0
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