Refactored Snapshot and Stats to use the Accumulator classes. Collected a number of methods into Thermo that belonged there.
Some bugfixes (CholeskyDecomposition), more work on fluctuating charges, migrating stats stuff into frameData
Fixed a strange bug where setting tempSet to false would still require a targetTemp
general bugfixes
Removed a line in Integrator.cpp where the forceMan_ was being initialized too early. Additionally, added a dummy value for rCut_ in ForceManager.cpp::setupCutoffs. JRM
added a forceman to the flucq propagator
Mostly whitespace
Reorganized source directories, added RNEMD and flucQ blocks for options parsing.
Adding more support structure for Fluctuating Charges.
updated copyright notices
builds
attempts at c++->fortran linkage. Still busticated.
Creating busticated version of OpenMD
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
added RNEMD scaling
only create RNEMD object if we need it.
Added handlers to Integrator to call RNEMD at the right times. Added initialization to RNEMD to make sure values from the MD file are available.
Adding RNEMD
MPI thermodynamic integration works now.
rewrite Globals
dding resetIntegrator
adding resetIntegrator
xemacs has been drafted to perform our indentation services
VelocityVerletIntegrator already deletes and Nullifies restWriter, so Integrator shouldn't do it.
First commit of the new restraints code
maximum length defaults to the cutoff radius
dynamicProps get built
forget to add eorWriter
merging new_design branch into OOPSE-2.0
improved restraints
Improvements to restraints
Commented out some write statements
Don't remember what I did
change the #include in source files
Import of OOPSE v. 2.0
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