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Comparing trunk/src/hydrodynamics/HydroProp.hpp (file contents):
Revision 981 by gezelter, Mon Jun 5 18:24:45 2006 UTC vs.
Revision 1184 by xsun, Fri Oct 5 19:01:12 2007 UTC

# Line 45 | Line 45 | namespace oopse {
45   #include "math/SquareMatrix3.hpp"
46   namespace oopse {
47  
48 +  /**
49 +   * @class HydroProp HydroProp.hpp "hydrodynamics/HydroProp.hpp"
50 +   * Container for information about the hydrodynamic behavior of objects
51 +   * undergoing Langevin dynamics.
52 +   * @note the units for the center of resistance (a location) are in Angstroms
53 +   *
54 +   * @note the units of Xi, the resistance tensor are:
55 +   *    Xitt (Translation-translation) : kcal fs mol^-1 Angstroms^-2
56 +   *    Xirt (Rotation-translation) : kcal fs mol^-1 Angstroms^-1 radians^-1
57 +   *    Xitr (Translation-rotation) : kcal fs mol^-1 Angstroms^-1 radians^-1
58 +   *    Xirr (Rotation-rotation) : kcal fs mol^-1 radians^-2
59 +   *
60 +   * @note the units of D, the diffusion tensor are:
61 +   *    Dtt (Translation-translation) : Angstroms^2 fs^-1
62 +   *    Drt (Rotation-translation) :    Angstroms fs^-1
63 +   *    Dtr (Translation-rotation) :    Angstroms fs^-1
64 +   *    Drr (Rotation-rotation) :       fs^-1
65 +   *  
66 +   * @note after setting the value of Xi manually, the complete() function
67 +   * should be called to perform the Cholesky Decomposition.
68 +   */
69    class HydroProp {
70  
71    public:

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