| 149 |
|
|
| 150 |
|
/** Wrapping the vector according to periodic boundary condition*/ |
| 151 |
|
void wrapVector(Vector3d& v); |
| 152 |
+ |
/** Scaling a vector to multiples of the periodic box */ |
| 153 |
+ |
Vector3d scaleVector(Vector3d &v); |
| 154 |
+ |
|
| 155 |
+ |
|
| 156 |
|
Vector3d getCOM(); |
| 157 |
|
Vector3d getCOMvel(); |
| 158 |
|
Vector3d getCOMw(); |
| 209 |
|
COMvel_ = COMvel; |
| 210 |
|
COMw_ = COMw; |
| 211 |
|
hasCOM_ = true; |
| 208 |
– |
} |
| 209 |
– |
|
| 210 |
– |
Vector3d getAtomPosByIindex(int iIndex) { |
| 211 |
– |
#ifdef IS_MPI |
| 212 |
– |
return atomIData.position[iIndex]; |
| 213 |
– |
#else |
| 214 |
– |
return atomData.position[iIndex]; |
| 215 |
– |
#endif |
| 216 |
– |
} |
| 217 |
– |
Vector3d getAtomPosByJindex(int jIndex) { |
| 218 |
– |
#ifdef IS_MPI |
| 219 |
– |
return atomJData.position[jIndex]; |
| 220 |
– |
#else |
| 221 |
– |
return atomData.position[jIndex]; |
| 222 |
– |
#endif |
| 223 |
– |
} |
| 224 |
– |
|
| 225 |
– |
Vector3d getCutoffGroupPosByIindex(int iIndex) { |
| 226 |
– |
#ifdef IS_MPI |
| 227 |
– |
return cgIData.position[iIndex]; |
| 228 |
– |
#else |
| 229 |
– |
return cgData.position[iIndex]; |
| 230 |
– |
#endif |
| 212 |
|
} |
| 232 |
– |
Vector3d getCutoffGroupPosByJindex(int jIndex) { |
| 233 |
– |
#ifdef IS_MPI |
| 234 |
– |
return cgJData.position[jIndex]; |
| 235 |
– |
#else |
| 236 |
– |
return cgData.position[jIndex]; |
| 237 |
– |
#endif |
| 238 |
– |
} |
| 213 |
|
|
| 214 |
|
DataStorage atomData; |
| 215 |
|
DataStorage rigidbodyData; |
| 216 |
|
DataStorage cgData; |
| 217 |
|
Stats statData; |
| 218 |
|
|
| 245 |
– |
#ifdef IS_MPI |
| 246 |
– |
DataStorage atomIData; |
| 247 |
– |
DataStorage atomJData; |
| 248 |
– |
DataStorage cgIData; |
| 249 |
– |
DataStorage cgJData; |
| 250 |
– |
#endif |
| 251 |
– |
|
| 252 |
– |
|
| 219 |
|
private: |
| 220 |
|
RealType currentTime_; |
| 221 |
|
|
