| 879 | 
  | 
 | 
| 880 | 
  | 
 | 
| 881 | 
  | 
  void SimInfo::prepareTopology() { | 
| 882 | 
– | 
    int nExclude, nOneTwo, nOneThree, nOneFour; | 
| 882 | 
  | 
 | 
| 883 | 
  | 
    //calculate mass ratio of cutoff group | 
| 884 | 
  | 
    SimInfo::MoleculeIterator mi; | 
| 926 | 
  | 
    }     | 
| 927 | 
  | 
     | 
| 928 | 
  | 
    //scan topology  | 
| 930 | 
– | 
 | 
| 931 | 
– | 
    nExclude = excludedInteractions_.getSize(); | 
| 932 | 
– | 
    nOneTwo = oneTwoInteractions_.getSize(); | 
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– | 
    nOneThree = oneThreeInteractions_.getSize(); | 
| 934 | 
– | 
    nOneFour = oneFourInteractions_.getSize(); | 
| 929 | 
  | 
 | 
| 930 | 
  | 
    int* excludeList = excludedInteractions_.getPairList(); | 
| 931 | 
  | 
    int* oneTwoList = oneTwoInteractions_.getPairList(); | 
| 1003 | 
  | 
    | 
| 1004 | 
  | 
   | 
| 1005 | 
  | 
  StuntDouble* SimInfo::getIOIndexToIntegrableObject(int index) { | 
| 1006 | 
< | 
    if (index >= IOIndexToIntegrableObject.size()) { | 
| 1006 | 
> | 
    if (index >= int(IOIndexToIntegrableObject.size())) { | 
| 1007 | 
  | 
      sprintf(painCave.errMsg, | 
| 1008 | 
  | 
              "SimInfo::getIOIndexToIntegrableObject Error: Integrable Object\n" | 
| 1009 | 
  | 
              "\tindex exceeds number of known objects!\n"); |