Merging some of the trunk changes back to the development branch,
cleaning up a datastorage bug

Code readability updates.

Possibly fixed the rigid body global indexing issue.  Reformatted
comments. Started work on the FrameData section of Snapshot.
        

Bug fixes for heat flux import

Added ability to read / write dump files with fluctuating charges and
electric fields.

Added an adapter layer between the AtomType and the rest of the code to 
handle the bolt-on capabilities of new types. 

Fixed a long-standing bug in how storageLayout was being set to the maximum
possible value.

Started to add infrastructure for Polarizable and fluc-Q calculations.

Splitting out ifstrstream into a header and an implementation.  This
means that much of the code that depends on it can be compiled only
once and the parallel I/O is concentrated into a few files.  To do
this, a number of files that relied on basic_ifstrstream to load the
mpi header had to be modified to manage their own headers.

removed spurious prints, fixed one bug, but there's still a parallel problem

Debugging mainly

bug fixes

Well, it compiles and builds, but still has a bus error at runtime.

Creating busticated version of OpenMD

Almost all of the changes necessary to create OpenMD out of our old
project (OOPSE-4)

more changes for 1-2, 1-3, 1-4 interactions plus some initialization-ordering
fixes to make gcc -Wall happier.

A bunch of minor changes to make MPI compilation faster than
the double compilation we do now...

fixing bond order parameter code

Massive changes preparing for release of OOPSE-4: The main difference
is that the new MD file format (.md, .dump, .eor) now contains meta-data
information along with the configuration information.

Adding spherical boundary conditions to LD integrator

In order to compile MPI version, we need to cast const char* to void* for stringstream.str();
Previous Makefile use bjects of single version to make the MPI library;

the standard library came with SUN compiler does not have a conforming std::use_facet, define a macro
to handle it. Adding exception handling to SimCreator.

OptionSectionParser get compiled

Shapes is limping along with a array bounds overwrite (I think...). At least the parser loads the forcefield fine...

fix a typo in MultipoleAtomTypesSectionParser

Using OOPSE_itoa and checking a NULL left over from the LinkedList days

info_ in Velocitizer is not initialized which causes a seg fault

replace SPRNG by MTRand

adding MersenneTwister random number generator

remove some useless files

merging new_design branch into OOPSE-2.0