Merging trunk changes 1812:1830 into development branch.
Merging some of the trunk changes back to the development branch, cleaning up a datastorage bug
Various fixes required to compile OpenMD with the MS Visual C++ compiler
Calculates the tetrahedrality parameter as a function of zbins. Abandon all hope ye who enter here.
Individual ForceField classes have been removed (they were essentially all duplicates anyway). ForceField has moved to brains, and since only one force field is in play at any time, the ForceFieldFactory and Register methods have been removed.
updated copyright notices
cleaning up the development branch a bit, removing cruft, etc.
Merging changes from old branch into development branch
removed spurious prints, fixed one bug, but there's still a parallel problem
Creating busticated version of OpenMD
Adding 2-D g(r) module to static props
Changes to gofrz so you can specify the z length
Adding property set to svn entries
Adding a new correlation function to do slab-segregated g(r) calculations. This computes at g(r) for pairs while requiring the z coordinates of the two sites to be at fixed separations. The data is output in: r, z, g(r,z)
Adding a progress bar, and pAngle staticProps
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Fixed a number of bugs in slab_density calculation
Correcting a few typos
fixed a few correlation functions
Added code to compute bond angle distributions.
Added Bond Order Parameter as a function of radius.
Added support for nanoparticle density profile.
Mostly done with BondOrderParameter. Only a few performance tweaks remain
fixing bond order parameter code
fixed bugs (mostly in BondOrderParameter)
Working on BondOrderParameter
Changing utility programs to use the new file format
Add the RippleOP to calculate the orderparameter of the ripples.
Adding single precision capabilities to c++ side
Autoconf fixes for FFTW. Multiple FFTW version support.
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Changes to calculate undulation spectrum
fixing RhoZ
working version of DensityPlot
adding DensityPlot into StaticProps
adding SCDOrderParameter into StaticProps
adding AtomNameVisitor to convert atom name to its base name; wrappingvisitor now wrap back to the center of the mass; adding P2OrderParameter into StaticProps
xemacs has been drafted to perform our indentation services
adding LipidTransVisitor, GofXyz is working now
change the default bin number
default length for staticProps is 1/2 smallest length of first frame
maximum length defaults to the cutoff radius
more work in StaticProps
change the filenames
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