applications/staticProps/RhoZ.hpp

/*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 *
 *
 *  RhoZ.hpp
 *  OOPSE-2.0
 *
 *  Created by Charles F. Vardeman II on 11/26/05.
 *  @author  Charles F. Vardeman II 
 *  @version $Id: RhoZ.hpp,v 1.5 2008-06-30 17:53:42 gpuliti Exp $
 *
 */
#ifndef APPLICATIONS_STATICPROPS_RHOZ_HPP
#define APPLICATIONS_STATICPROPS_RHOZ_HPP

#include <string>
#include <vector>
#include "selection/SelectionEvaluator.hpp"
#include "selection/SelectionManager.hpp"
#include "utils/NumericConstant.hpp"
#include "applications/staticProps/StaticAnalyser.hpp"

namespace oopse {
  
  class RhoZ : public StaticAnalyser {
    
  public:
    RhoZ(SimInfo* info, const std::string& filename, const std::string& sele, int nzbins);
    
    int getNZBins() {
      return nZBins_; 
    }
    
    virtual void process();
    
  private:
    
    virtual void writeDensity();
    
    
    Snapshot* currentSnapshot_;
    
    int nProcessed_;
    std::string selectionScript_;
    SelectionEvaluator evaluator_;
    SelectionManager seleMan_;
    
    int nZBins_; 
    
    std::vector<std::vector<StuntDouble*> > sliceSDLists_;
    std::vector<RealType> zBox_;
    std::vector<RealType> density_;
  };
  
}
#endif


Revision:	1267
Committed:	Mon Jun 30 17:53:42 2008 UTC (16 years, 10 months ago) by gpuliti
Original Path:	*trunk/src/applications/staticProps/RhoZ.hpp*
File size:	3221 byte(s)
Log Message:	Fixed a number of bugs in slab_density calculation
#	User	Rev	Content
1	chuckv	769	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*
41			*
42			* RhoZ.hpp
43			* OOPSE-2.0
44			*
45			* Created by Charles F. Vardeman II on 11/26/05.
46			* @author Charles F. Vardeman II
47	gpuliti	1267	* @version $Id: RhoZ.hpp,v 1.5 2008-06-30 17:53:42 gpuliti Exp $
48	chuckv	769	*
49			*/
50			#ifndef APPLICATIONS_STATICPROPS_RHOZ_HPP
51			#define APPLICATIONS_STATICPROPS_RHOZ_HPP
52
53	gpuliti	1267	#include <string>
54			#include <vector>
55			#include "selection/SelectionEvaluator.hpp"
56			#include "selection/SelectionManager.hpp"
57			#include "utils/NumericConstant.hpp"
58			#include "applications/staticProps/StaticAnalyser.hpp"
59
60	chuckv	769	namespace oopse {
61
62	tim	840	class RhoZ : public StaticAnalyser {
63	chuckv	769
64	gpuliti	1267	public:
65			RhoZ(SimInfo* info, const std::string& filename, const std::string& sele, int nzbins);
66	chuckv	769
67	gpuliti	1267	int getNZBins() {
68			return nZBins_;
69	chuckv	769	}
70
71	tim	840	virtual void process();
72	chuckv	769
73	gpuliti	1267	private:
74	chuckv	769
75	tim	840	virtual void writeDensity();
76	gpuliti	1267
77
78	tim	840	Snapshot* currentSnapshot_;
79	gpuliti	1267
80	tim	840	int nProcessed_;
81			std::string selectionScript_;
82			SelectionEvaluator evaluator_;
83			SelectionManager seleMan_;
84	chuckv	769
85	gpuliti	1267	int nZBins_;
86	gezelter	894
87	tim	840	std::vector<std::vector<StuntDouble*> > sliceSDLists_;
88	gpuliti	1267	std::vector<RealType> zBox_;
89	tim	963	std::vector<RealType> density_;
90	chuckv	769	};
91
92			}
93			#endif
94
95
96