applications/staticProps/RadialDistrFunc.hpp

/*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */
#ifndef APPLICATIONS_STATICPROPS_RADIALDISTRFUNC_HPP
#define APPLICATIONS_STATICPROPS_RADIALDISTRFUNC_HPP

#include <string>
#include <vector>

#include "selection/SelectionEvaluator.hpp"
#include "selection/SelectionManager.hpp"
#include "utils/NumericConstant.hpp"
namespace oopse {

/**
 * @class RadialDistrFunc
 * @brief Radial Distribution Function
 */
class RadialDistrFunc {
    public:
        RadialDistrFunc(SimInfo* info, const std::string& filename, const std::string& sele1, const std::string& sele2);

        virtual ~RadialDistrFunc() {}
        
        void process();        

        void setOutputName(const std::string& filename) {
            outputFilename_ = filename;
        }

        const std::string& getOutputFileName() const {
            return outputFilename_;
        }

        void setStep(int step) {
            assert(step > 0);
            step_ =step;    
        }
        
    protected:

        virtual void preProcess() {}
        virtual void postProcess() {}

        int getNPairs() { return nPairs_;}
        
        SimInfo* info_;
        Snapshot* currentSnapshot_;

        std::string dumpFilename_;
        std::string outputFilename_;
        int step_;
        std::string selectionScript1_;
        std::string selectionScript2_;
        int nProcessed_;
        SelectionManager seleMan1_;
        SelectionManager seleMan2_;
        
    private:

        virtual void initalizeHistogram() {}
        virtual void collectHistogram(StuntDouble* sd1, StuntDouble* sd2) =0;
        virtual void processHistogram() = 0;
        void processNonOverlapping(SelectionManager& sman1, SelectionManager& sman2);
        void processOverlapping(SelectionManager& sman);

        virtual void validateSelection1(SelectionManager& sman) {}
        virtual void validateSelection2(SelectionManager& sman) {}
        virtual void writeRdf() = 0;

        
        SelectionEvaluator evaluator1_;
        SelectionEvaluator evaluator2_;

        SelectionManager sele1_minus_common_;
        SelectionManager sele2_minus_common_;
        SelectionManager common_;        
        int nPairs_;
};


}
#endif
Revision:	361
Committed:	Thu Feb 17 18:30:54 2005 UTC (20 years, 2 months ago) by tim
Original Path:	*trunk/src/applications/staticProps/RadialDistrFunc.hpp*
File size:	4230 byte(s)
Log Message:	finish GofXyz
#	User	Rev	Content
1	tim	306	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41			#ifndef APPLICATIONS_STATICPROPS_RADIALDISTRFUNC_HPP
42			#define APPLICATIONS_STATICPROPS_RADIALDISTRFUNC_HPP
43
44	tim	307	#include <string>
45	tim	306	#include <vector>
46
47			#include "selection/SelectionEvaluator.hpp"
48			#include "selection/SelectionManager.hpp"
49	tim	311	#include "utils/NumericConstant.hpp"
50	tim	306	namespace oopse {
51
52			/**
53			* @class RadialDistrFunc
54			* @brief Radial Distribution Function
55			*/
56			class RadialDistrFunc {
57			public:
58	tim	310	RadialDistrFunc(SimInfo* info, const std::string& filename, const std::string& sele1, const std::string& sele2);
59	tim	306
60	tim	310	virtual ~RadialDistrFunc() {}
61
62	tim	306	void process();
63
64			void setOutputName(const std::string& filename) {
65			outputFilename_ = filename;
66			}
67
68			const std::string& getOutputFileName() const {
69			return outputFilename_;
70			}
71
72			void setStep(int step) {
73			assert(step > 0);
74			step_ =step;
75			}
76
77			protected:
78
79			virtual void preProcess() {}
80			virtual void postProcess() {}
81
82	tim	353	int getNPairs() { return nPairs_;}
83	tim	347
84	tim	306	SimInfo* info_;
85			Snapshot* currentSnapshot_;
86	tim	310
87	tim	306	std::string dumpFilename_;
88			std::string outputFilename_;
89			int step_;
90			std::string selectionScript1_;
91			std::string selectionScript2_;
92	tim	307	int nProcessed_;
93	tim	361	SelectionManager seleMan1_;
94			SelectionManager seleMan2_;
95	tim	347
96	tim	306	private:
97
98			virtual void initalizeHistogram() {}
99			virtual void collectHistogram(StuntDouble* sd1, StuntDouble* sd2) =0;
100			virtual void processHistogram() = 0;
101	tim	353	void processNonOverlapping(SelectionManager& sman1, SelectionManager& sman2);
102			void processOverlapping(SelectionManager& sman);
103	tim	306
104	tim	361	virtual void validateSelection1(SelectionManager& sman) {}
105			virtual void validateSelection2(SelectionManager& sman) {}
106	tim	306	virtual void writeRdf() = 0;
107
108
109			SelectionEvaluator evaluator1_;
110			SelectionEvaluator evaluator2_;
111	tim	361
112	tim	353	SelectionManager sele1_minus_common_;
113			SelectionManager sele2_minus_common_;
114			SelectionManager common_;
115			int nPairs_;
116	tim	306	};
117
118
119			}
120			#endif