Merged trunk changes into the development branch
Individual ForceField classes have been removed (they were essentially all duplicates anyway). ForceField has moved to brains, and since only one force field is in play at any time, the ForceFieldFactory and Register methods have been removed.
updated copyright notices
Replacing most of the C-code with C++ code, and migrating the config.h file into the PROJECT_BINARY_DIR so that we can have multiple builds on the same architecture.
fixing the build system
updating gengetopt runs
Creating busticated version of OpenMD
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
fixing missing lattice arguments, adding a builder sample
Fixing the builders to prepare for OOPSE-4 release
Adding single precision capabilities to c++ side
Added a random builder to oopse.
xemacs has been drafted to perform our indentation services
fix memory leak in nanorodBuilder and simpleBuilder(forget to delete lattice)
refactory lattice
refactory LatticeFactory and LatticeCreator
added lattice directory, so all of these files are now redundant
avoid building parallel executable for dump2XYZ, simpleBuilder, staticProps and dynamicProps
adding basic_teebuf which can operate on multiple stream simutaneously.
moved Package variable into subdirectory makefiles to speed up the building process
merging new_design branch into OOPSE-2.0
remove old Vector3d.hpp from application/simpleBuilder
STL next_permutation like next_combination is working
cleaning up
define DEV_ROOT as relative path
change Makefile to relative path
change directory structure of application. Every executable file is replaced in seperate directory